Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Forward (+)

41447495 .. 41452444

Gene Structure 4950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0343800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGACGAAGAAGAAGCTCCAACTCATCGGCCTCCTCCTCCGTTTGTGGAGGTGAAATGCGAGAGTTCAGGCATGAGAAGGCGCTTCGCAATGGGCACAGAAGCAGGTTTCGCAGTGTCAGTCATAAACAGCAAATTGGGGGACCCTCACCCTCACCCTCTTTCTCTGCACATTGAAGCCGTTAAGGAAGGTGAGGAGCCTATCACTTTCGGACCCAACTCACTTCTCGTCGACTACGGCCCCGGTTGGACATTACACACTGTTACCCAACTCCCATTTTCTGGTGGAGAAGGTGTTGTTAGGCCAAAGCCAATGCAAGTTCCTCATGTAATGGGCTCTGACAACTTGCATGCTGCAAAGGGGGTACCAAGACAAGCAATCGATTTTATGTACGTTGGAAAAATAGTGTTAGCTTTTATTTTTATTTTTGTACTTGGCGCAATTTTGACTTTGGTTCTTGAGAACATTCCTAGACTGATGAAGTTGCTCGAACAATATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

167

Amino Acids

18.35

Weight (kDa)

5.95

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	95
Acc65I	GGTACC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	366, 392, 432
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	17, 413
AluI	AGCT	2 cut(s)	17, 413
AoxI	GGCC	3 cut(s)	29, 238, 302
ApeKI	GCWGC	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	364
AspLEI	GCGC	2 cut(s)	84, 440
AspS9I	GGNCC	3 cut(s)	142, 212, 239
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	4 cut(s)	64, 140, 146, 203
AvaII	GGWCC	2 cut(s)	142, 212
BaeGI	GKGCMC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	340
BceAI	ACGGC	2 cut(s)	164, 253
BcnI	CCSGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	142, 212
BmgT120I	GGNCC	3 cut(s)	142, 212, 239
BmiI	GGNNCC	6 cut(s)	143, 144, 198, 214, 241, 366
BmrFI	CCNGG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	96
BseRI	GAGGAG	3 cut(s)	24, 27, 209
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	152
BshFI	GGCC	3 cut(s)	31, 240, 304
BshNI	GGYRCC	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	31, 240, 304
Bsp1286I	GDGCHC	2 cut(s)	98, 338
BspANI	GGCC	3 cut(s)	31, 240, 304
BspDI	ATCGAT	1 cut(s)	381
BspLI	GGNNCC	6 cut(s)	143, 144, 198, 214, 241, 366
BspMI	ACCTGC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	84, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	31, 240, 304
BsuTUI	ATCGAT	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 258
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	2 cut(s)	84, 440
Cfr13I	GGNCC	3 cut(s)	142, 212, 239
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	365, 391, 431
CviAII	CATG	3 cut(s)	73, 326, 350
CviJI	RGCY	9 cut(s)	17, 31, 179, 199, 240, 304, 310, 336, 413
CviKI_1	RGCY	9 cut(s)	17, 31, 179, 199, 240, 304, 310, 336, 413
CviQI	GTAC	3 cut(s)	365, 391, 431
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	142, 212
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	3 cut(s)	76, 329, 353
FaiI	YATR	6 cut(s)	74, 125, 327, 351, 389, 498
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	72, 325, 349
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	83, 439
GluI	GCNGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	31, 240, 304
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	2 cut(s)	84, 440
Hin1II	CATG	3 cut(s)	76, 329, 353
Hin6I	GCGC	2 cut(s)	82, 438
HinP1I	GCGC	2 cut(s)	82, 438
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	4 cut(s)	64, 140, 146, 203
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	212, 340
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	72, 182, 284
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	169, 316, 349, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	76, 329, 353
HspAI	GCGC	2 cut(s)	82, 438
KflI	GGGWCCC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	368
LmnI	GCTCC	2 cut(s)	22, 196
LpnPI	CCDG	4 cut(s)	54, 90, 256, 267
Lsp1109I	GCAGC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	20, 23
MhlI	GDGCHC	2 cut(s)	98, 338
MluCI	AATT	2 cut(s)	134, 441
MmeI	TCCRAC	3 cut(s)	44, 227, 376
MnlI	CCTC	9 cut(s)	42, 43, 45, 48, 156, 162, 168, 187, 333
MseI	TTAA	1 cut(s)	183
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	243
NlaIII	CATG	3 cut(s)	76, 329, 353
NlaIV	GGNNCC	6 cut(s)	143, 144, 198, 214, 241, 366
NspI	RCATGY	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	6 cut(s)	143, 144, 198, 214, 241, 366
PspPI	GGNCC	3 cut(s)	142, 212, 239
PspPPI	RGGWCCY	1 cut(s)	142
RsaI	GTAC	3 cut(s)	366, 392, 432
RsaNI	GTAC	3 cut(s)	365, 391, 431
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	354
Sau96I	GGNCC	3 cut(s)	142, 212, 239
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	98, 338
SetI	ASST	7 cut(s)	19, 54, 109, 193, 295, 396, 415
SinI	GGWCC	2 cut(s)	142, 212
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	2 cut(s)	134, 441
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	3 cut(s)	231, 381, 489
TasI	AATT	2 cut(s)	134, 441
TatI	WGTACW	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	120, 265
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	120, 265
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	142, 212
XceI	RCATGY	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.