Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

11053631 .. 11054073

Gene Structure 443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGATATACTTTTCTCCAGGCCAACCAAAGTTTTCTGGACCTTTCACTCAAATGTTATGATGTACAGGTCTGGGATTTCAAGGAAACGTGGAGTGCCATCTAGATGGGAAGTTGGGAGCTCTGTTGTCAGGATTGTCTCTTGGCTGTTGTTGGCTGATGACTTAATTATCCGCTTGTTTGATGTTGTGGCATCAAGAATGGTTCGTAAATTTGAAGGCCATACTGATCGTGTTATAGACATGTGTTTTAGTGAGGATGGAAAATGGCTTTTGTCTTCCAGTATGGATGGAAGTCTTCGAGTTTGGGATGTTATCTTAGCAAGACAAATTGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

112

Amino Acids

13.0

Weight (kDa)

9.5

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	51 - 111	7.6e-20	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	52 - 104	4.3e-09	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	53 - 104	5.4e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	53 - 105	1.4e-11	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	53 - 104	3.7e-07	THOC3 beta-propeller domain
WDR55	PF24796	53 - 104	4.1e-06	WDR55
WD40_Prp19	PF24814	54 - 104	1.4e-08	Prp19 WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	56 - 104	6.7e-06	WDR90/POC16, second beta-propeller
WD40_CDC20-Fz	PF24807	57 - 102	9e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	67 - 103	3e-12	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	68 - 109	1.4e-06	CAF1B/HIR1 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	81, 215
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	20, 217
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	267, 287
Bbv12I	GWGCWC	1 cut(s)	122
BccI	CCATC	4 cut(s)	99, 106, 251, 281
BciT130I	CCWGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	200, 322
BpiI	GAAGAC	2 cut(s)	267, 287
Bse1I	ACTGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	19
BseGI	GGATG	3 cut(s)	262, 292, 313
BseNI	ACTGG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	22, 219
BsiHKAI	GWGCWC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	22, 219
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	22, 219
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	316
BstF5I	GGATG	3 cut(s)	262, 292, 313
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	267, 287
BstXI	CCANNNNNNTGG	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	22, 219
BtsCI	GGATG	3 cut(s)	262, 292, 313
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	6 cut(s)	22, 120, 145, 155, 219, 268
CviKI_1	RGCY	6 cut(s)	22, 120, 145, 155, 219, 268
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	1 cut(s)	244
FaiI	YATR	7 cut(s)	8, 59, 222, 236, 242, 284, 337
FatI	CATG	1 cut(s)	240
FokI	GGATG	3 cut(s)	269, 299, 320
FriOI	GRGCYC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	22, 219
Hin1II	CATG	1 cut(s)	244
Hpy188III	TCNNGA	4 cut(s)	37, 102, 130, 195
HpyAV	CCTTC	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	335
HpyF3I	CTNAG	1 cut(s)	316
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	4, 22, 31, 52, 57, 115, 292
LweI	GCATC	2 cut(s)	200, 322
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	88
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	267, 287
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	3 cut(s)	165, 209, 327
MnlI	CCTC	1 cut(s)	247
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	2 cut(s)	51, 103
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	244
PciI	ACATGT	1 cut(s)	240
PscI	ACATGT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	39
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	2 cut(s)	51, 103
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	4 cut(s)	44, 71, 91, 122
SfaNI	GCATC	2 cut(s)	200, 322
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	51, 103
Sse9I	AATT	3 cut(s)	165, 209, 327
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	17
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	298
TasI	AATT	3 cut(s)	165, 209, 327
TatI	WGTACW	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	39
XapI	RAATTY	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	101
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.