Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007006.1

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

2841 .. 3821

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007006.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgggaatcttcgagcccttcagagcaatcagctacaccaccacctccgtccccttctccattcagcacctcggcactgaagccttcatcaccgtcaccgtcaccgttggcaaagccttccaaatttacaattgcgcaaagctcactttggtcctcgtcgaacgccttgcagaagaatttgaagagcagcttgagaaacgcatcgataaacaacgtcaagacgaagcgagagttaatatcacaacactcgccgacgctggtcaggagattactgctatgaaacaagatattgggaattttcgtcaagacaccagcaggaatttggtaaatctaacaaatcatgtggatcaattggcgaataaagttcagcagcttacagtggcagtgcgagcaggaggatttgcccgaggccaacaccgtcagcaagaacaaaactacgattatgaggaagaagacgaaaggggcccaccaaacaatcaacaacaaaaccaccaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

166

Amino Acids

18.97

Weight (kDa)

5.15

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	136
AclWI	GGATC	1 cut(s)	354
AcsI	RAATTY	4 cut(s)	123, 176, 295, 319
AcuI	CTGAAG	2 cut(s)	4, 99
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	4 cut(s)	33, 142, 190, 373
AluI	AGCT	4 cut(s)	33, 142, 190, 373
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	2 cut(s)	409, 463
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	2 cut(s)	187, 370
ApoI	RAATTY	4 cut(s)	123, 176, 295, 319
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	151, 463, 464
AsuHPI	GGTGA	3 cut(s)	82, 88, 94
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	467
BanII	GRGCYC	2 cut(s)	18, 467
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	199, 382
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BisI	GCNGC	2 cut(s)	188, 371
BlsI	GCNGC	2 cut(s)	189, 372
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	3 cut(s)	151, 463, 464
BmiI	GGNNCC	2 cut(s)	464, 465
BmsI	GCATC	1 cut(s)	210
BoxI	GACNNNNGTC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	70, 406
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	70, 406
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	199, 382
BshFI	GGCC	2 cut(s)	411, 465
BshVI	ATCGAT	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	411, 465
BsoBI	CYCGRG	1 cut(s)	405
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	18, 467
Bsp143I	GATC	1 cut(s)	346
BspANI	GGCC	2 cut(s)	411, 465
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	464, 465
BspPI	GGATC	1 cut(s)	354
BspQI	GCTCTTC	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	70, 406
BssMI	GATC	1 cut(s)	346
Bst4CI	ACNGT	5 cut(s)	94, 100, 106, 379, 419
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	199, 382
BstV2I	GAAGAC	1 cut(s)	459
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	411, 465
BsuTUI	ATCGAT	1 cut(s)	204
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	75, 384, 390
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	151, 463, 464
ClaI	ATCGAT	1 cut(s)	204
CseI	GACGC	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	9 cut(s)	16, 33, 83, 116, 142, 190, 373, 411, 465
CviKI_1	RGCY	9 cut(s)	16, 33, 83, 116, 142, 190, 373, 411, 465
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	18, 467
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	4, 99
Eco88I	CYCGRG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	463
EcoT38I	GRGCYC	2 cut(s)	18, 467
FaeI	CATG	1 cut(s)	344
FaiI	YATR	3 cut(s)	278, 342, 444
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	188, 371
FriOI	GRGCYC	2 cut(s)	18, 467
Fsp4HI	GCNGC	2 cut(s)	188, 371
FspI	TGCGCA	1 cut(s)	136
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	2 cut(s)	188, 371
HaeIII	GGCC	2 cut(s)	411, 465
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	3 cut(s)	82, 88, 94
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	3 cut(s)	218, 263, 305
Hpy99I	CGWCG	2 cut(s)	161, 257
HpyAV	CCTTC	4 cut(s)	28, 64, 94, 127
HpyCH4III	ACNGT	5 cut(s)	94, 100, 106, 379, 419
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	346
LguI	GCTCTTC	1 cut(s)	177
LpnPI	CCDG	5 cut(s)	243, 248, 301, 325, 378
Lsp1109I	GCAGC	2 cut(s)	199, 382
LweI	GCATC	1 cut(s)	210
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	2 cut(s)	94, 100
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	4 cut(s)	185, 194, 461, 464
MfeI	CAATTG	2 cut(s)	130, 350
MhlI	GDGCHC	2 cut(s)	18, 467
MluCI	AATT	6 cut(s)	123, 130, 176, 295, 319, 350
MnlI	CCTC	6 cut(s)	55, 80, 164, 389, 401, 439
MseI	TTAA	1 cut(s)	234
MunI	CAATTG	2 cut(s)	130, 350
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	464, 465
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	94, 100
NsbI	TGCGCA	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	189, 372
PshAI	GACNNNNGTC	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	464, 465
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	3 cut(s)	151, 463, 464
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	188, 371
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	3 cut(s)	151, 463, 464
SduI	GDGCHC	2 cut(s)	18, 467
SetI	ASST	7 cut(s)	35, 47, 72, 144, 192, 217, 375
SfaNI	GCATC	1 cut(s)	210
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	6 cut(s)	123, 130, 176, 295, 319, 350
TaaI	ACNGT	5 cut(s)	94, 100, 106, 379, 419
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	12, 159, 204
TasI	AATT	6 cut(s)	123, 130, 176, 295, 319, 350
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	82, 384, 390
TseFI	GTSAC	2 cut(s)	94, 100
TseI	GCWGC	2 cut(s)	187, 370
Tsp45I	GTSAC	2 cut(s)	94, 100
TspDTI	ATGAA	2 cut(s)	76, 293
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	3 cut(s)	82, 384, 390
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	4 cut(s)	123, 176, 295, 319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.