Rmu_sc0001468.1_g000040

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001468.1
OG0001399
Physical Location & Seq
Forward (+)
183102 .. 183707
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001468.1_g000040.1.cds

Sequence Viewer

Length: 306 bp
atggaacttcgaattcttcagattgtaggtgatgaggatgaagaagagccagaaaagttgcttccaattgaactgcttttcgactattttatacacgagactgcatgcagaaacaattttgactttgtacaagctgtgatcagggtttttttgaagatacatggtgaaacaattcgacgccagtcaagactacaagataaggcaagcaagctcctagacgttcaatgcaacacatggcaaagagtagataaaatgtttcagagtgccaggtgcatggtcacttttcttagcaattcacagttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

101

Amino Acids

12.02

Weight (kDa)

5.34

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 178
AfaI GTAC 1 cut(s) 129
AgsI TTSAA 3 cut(s) 71, 154, 224
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 2 cut(s) 134, 211
AluI AGCT 2 cut(s) 134, 211
Alw26I GTCTC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 41, 176
AsuII TTCGAA 1 cut(s) 10
BauI CACGAG 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 268
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 268
BoxI GACNNNNGTC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 1 cut(s) 138
BspQI GCTCTTC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 1 cut(s) 181
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 178
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 178
BstAUI TGTACA 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 10
BstC8I GCNNGC 3 cut(s) 106, 205, 209
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 1 cut(s) 108
BstPAI GACNNNNGTC 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 106, 205, 209
CseI GACGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 128
CviAII CATG 4 cut(s) 105, 161, 234, 274
CviJI RGCY 3 cut(s) 49, 134, 211
CviKI_1 RGCY 3 cut(s) 49, 134, 211
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 266
FaeI CATG 4 cut(s) 108, 164, 237, 277
FaiI YATR 5 cut(s) 92, 106, 162, 235, 275
FatI CATG 4 cut(s) 104, 160, 233, 273
FbaI TGATCA 1 cut(s) 138
FokI GGATG 1 cut(s) 50
FspBI CTAG 1 cut(s) 215
HgaI GACGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 4 cut(s) 108, 164, 237, 277
HphI GGTGA 2 cut(s) 41, 176
Hpy188I TCNGA 2 cut(s) 21, 261
Hpy188III TCNNGA 1 cut(s) 186
Hpy99I CGWCG 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 104, 108, 228, 273
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 4 cut(s) 108, 164, 237, 277
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 1 cut(s) 138
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 5 cut(s) 63, 127, 194, 253, 280
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 4 cut(s) 8, 53, 56, 166
MfeI CAATTG 1 cut(s) 66
MluCI AATT 5 cut(s) 12, 66, 115, 171, 292
MnlI CCTC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 268
MunI CAATTG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 268
NdeII GATC 1 cut(s) 138
NlaIII CATG 4 cut(s) 108, 164, 237, 277
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 108
NspV TTCGAA 1 cut(s) 10
PaeI GCATGC 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 171
PshAI GACNNNNGTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 268
SetI ASST 5 cut(s) 31, 136, 213, 222, 272
SfuI TTCGAA 1 cut(s) 10
SphI GCATGC 1 cut(s) 108
Sse9I AATT 5 cut(s) 12, 66, 115, 171, 292
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 222
TaqI TCGA 3 cut(s) 10, 81, 175
TasI AATT 5 cut(s) 12, 66, 115, 171, 292
TatI WGTACW 1 cut(s) 127
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 54
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.