Rmu_sc0011587.1_g000001

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011587.1
OG0001399
Physical Location & Seq
Forward (+)
40 .. 1244
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011587.1_g000001.1.cds

Sequence Viewer

Length: 729 bp
atggttcgtaaatttgaaggccatactgatcgtgttacagacatgtgttttagtgaggatggaaaatggcttttgtcttccagtatggatggaagtcttcgagtttgggatgttatcttagcaagacaaatagatgcgttgcatgttgatgtgtctgtgactgcattgtctttatcaccgaatatggatattttagcgacctcccatgttgatcaaaatggggtctatctttgggtgaatcaatcaatgttttcgggagtttcaaaggtagattcctatgcaagtggaaagcgagttgtgagtgttaagttgccatctgtctcttcgacaaaaggttctgaagctgaggattctgatgagcctgttggaaactctgaacaactgaaagatgcttctgctcttccaagtcctgtacagcaaattccagatcttgttactctctcatcatatcctaaaagccagtggcaaagcttaatcaacttagacattataaaggaacgaaataaaccgattgagcccccaaagaaacctgaaaaggctcctttctttttgccttcagttccatctttttcaggagaaataatgtttaagcctactgggtcgacaaatgaggaggcaaaaggtggtgaagaatcatctagaataaaggctgctctagcgccatcaatattccttcaagcgcttcagtcatctgcagaaatgaagaattgtaaatatgttatcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

242

Amino Acids

26.48

Weight (kDa)

5.32

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AasI GACNNNNNNGTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 602
AcsI RAATTY 2 cut(s) 11, 420
AcuI CTGAAG 3 cut(s) 360, 540, 668
AfaI GTAC 1 cut(s) 414
AfeI AGCGCT 1 cut(s) 681
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 3 cut(s) 17, 264, 677
AluBI AGCT 2 cut(s) 344, 471
AluI AGCT 2 cut(s) 344, 471
Alw26I GTCTC 1 cut(s) 325
Aor51HI AGCGCT 1 cut(s) 681
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 2 cut(s) 11, 420
AspLEI GCGC 2 cut(s) 661, 682
AsuHPI GGTGA 3 cut(s) 168, 247, 638
BanII GRGCYC 1 cut(s) 519
BbsI GAAGAC 2 cut(s) 69, 89
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 637
BccI CCATC 5 cut(s) 53, 83, 322, 571, 670
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 2 cut(s) 639, 656
BfmI CTRYAG 1 cut(s) 693
BfoI RGCGCY 2 cut(s) 662, 683
BglII AGATCT 1 cut(s) 427
BisI GCNGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 652
BmiI GGNNCC 1 cut(s) 540
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 2 cut(s) 124, 379
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 69, 89
Bpu10I CCTNAGC 1 cut(s) 345
Bse1I ACTGG 3 cut(s) 81, 460, 601
BseGI GGATG 3 cut(s) 64, 94, 115
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 81, 460, 601
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 1 cut(s) 637
BshFI GGCC 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 325
BsnI GGCC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 519
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 3 cut(s) 28, 211, 427
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 540
BspMAI CTGCAG 1 cut(s) 697
BspQI GCTCTTC 1 cut(s) 405
BsrGI TGTACA 1 cut(s) 412
BsrI ACTGG 3 cut(s) 81, 460, 601
BssMI GATC 3 cut(s) 28, 211, 427
Bst6I CTCTTC 2 cut(s) 328, 405
BstAUI TGTACA 1 cut(s) 412
BstDEI CTNAG 3 cut(s) 118, 345, 481
BstF5I GGATG 3 cut(s) 64, 94, 115
BstH2I RGCGCY 2 cut(s) 662, 683
BstHHI GCGC 2 cut(s) 661, 682
BstKTI GATC 3 cut(s) 31, 214, 430
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 3 cut(s) 28, 211, 427
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNSI RCATGY 2 cut(s) 46, 146
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 1 cut(s) 637
BstV2I GAAGAC 2 cut(s) 69, 89
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 3 cut(s) 64, 94, 115
BtsIMutI CAGTG 1 cut(s) 467
CfoI GCGC 2 cut(s) 661, 682
Csp6I GTAC 1 cut(s) 413
CviAII CATG 3 cut(s) 43, 143, 206
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 3 cut(s) 118, 345, 481
DpnI GATC 3 cut(s) 30, 213, 429
DpnII GATC 3 cut(s) 28, 211, 427
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 328, 405
EarI CTCTTC 2 cut(s) 328, 405
Eco24I GRGCYC 1 cut(s) 519
Eco47III AGCGCT 1 cut(s) 681
Eco57I CTGAAG 3 cut(s) 360, 540, 668
EcoT38I GRGCYC 1 cut(s) 519
FaeI CATG 3 cut(s) 46, 146, 209
FatI CATG 3 cut(s) 42, 142, 205
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 602
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 3 cut(s) 71, 101, 122
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 2 cut(s) 639, 656
GlaI GCGC 2 cut(s) 660, 681
GluI GCNGC 1 cut(s) 651
HaeII RGCGCY 2 cut(s) 662, 683
HaeIII GGCC 1 cut(s) 21
HhaI GCGC 2 cut(s) 661, 682
Hin1II CATG 3 cut(s) 46, 146, 209
Hin6I GCGC 2 cut(s) 659, 680
HinP1I GCGC 2 cut(s) 659, 680
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 4 cut(s) 238, 272, 350, 632
HphI GGTGA 3 cut(s) 168, 247, 638
Hpy166II GTNNAC 1 cut(s) 603
Hpy188I TCNGA 3 cut(s) 340, 355, 376
Hpy188III TCNNGA 4 cut(s) 255, 425, 573, 639
Hpy8I GTNNAC 1 cut(s) 603
HpyAV CCTTC 3 cut(s) 11, 564, 683
HpyCH4V TGCA 4 cut(s) 142, 164, 281, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 3 cut(s) 118, 345, 481
Hsp92II CATG 3 cut(s) 46, 146, 209
HspAI GCGC 2 cut(s) 659, 680
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 28, 211, 427
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 8 cut(s) 94, 375, 423, 438, 473, 543, 558, 582
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 2 cut(s) 124, 379
MaeI CTAG 2 cut(s) 639, 656
MaeIII GTNAC 3 cut(s) 34, 157, 433
MalI GATC 3 cut(s) 30, 213, 429
MboI GATC 3 cut(s) 28, 211, 427
MboII GAAGA 6 cut(s) 69, 89, 315, 392, 641, 715
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 3 cut(s) 11, 420, 706
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 5 cut(s) 49, 211, 340, 604, 607
MseI TTAA 3 cut(s) 306, 473, 588
MslI CAYNNNNRTG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 656
NdeII GATC 3 cut(s) 28, 211, 427
NlaIII CATG 3 cut(s) 46, 146, 209
NlaIV GGNNCC 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 2 cut(s) 46, 146
PciI ACATGT 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 405
PfeI GAWTC 4 cut(s) 238, 272, 350, 632
PkrI GCNGC 1 cut(s) 652
PscI ACATGT 1 cut(s) 42
PsiI TTATAA 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 540
PstI CTGCAG 1 cut(s) 697
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 147
SalI GTCGAC 1 cut(s) 601
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 3 cut(s) 306, 473, 588
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 3 cut(s) 28, 211, 427
SduI GDGCHC 1 cut(s) 519
SetI ASST 7 cut(s) 203, 270, 337, 346, 473, 532, 625
SfaNI GCATC 2 cut(s) 124, 379
SfcI CTRYAG 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 3 cut(s) 11, 420, 706
SspI AATATT 1 cut(s) 669
SspMI CTAG 2 cut(s) 639, 656
TaqI TCGA 3 cut(s) 100, 326, 602
TasI AATT 3 cut(s) 11, 420, 706
TatI WGTACW 1 cut(s) 412
TfiI GAWTC 4 cut(s) 238, 272, 350, 632
Tru1I TTAA 3 cut(s) 306, 473, 588
Tru9I TTAA 3 cut(s) 306, 473, 588
TscAI CASTG 1 cut(s) 467
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 716
TspRI CASTG 1 cut(s) 467
XapI RAATTY 2 cut(s) 11, 420
XbaI TCTAGA 1 cut(s) 638
XceI RCATGY 2 cut(s) 46, 146
XmiI GTMKAC 1 cut(s) 602
XspI CTAG 2 cut(s) 639, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.