Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

11130806 .. 11131696

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTTAAGCCTACTGGGTCAACAAATGAGGAGGCAAAAGGTGGTGAAGAATCATCTAGAATAAAGGGTGCTCTGGCACCATCAATATTCCTTCAAGCGCTTCAGTCATCTGCAGAAATGAAGAATTTTTCAGAATTTACTGATTTCATCAAAACTTTATCTCCATCATCCCTGGATATGGAACTTCGAATTCTTCAGATTGTAGGTGATGAGGATGAAGAAGAGCCAGAAAAGTTGCTTCCAATTGAACTGTTTCTCAACTATTTTATACACGAGACTGCATGCAGAAACAATTTTGACTTTGTACAAGCTGTGATCAGGGTTTTTCTGAAGATACATGGCGAAACAATTCGACGCCAATCAAGACTACAGGATAAGGCAAGCAAACTCCTAGACGTTCAATGCAACACATGGCAGAGAGTAGATAAAATGTTTCAAAGTGCCAGGTGCATGGTCACTTTTGTTAGCACTTCACAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

160

Amino Acids

18.34

Weight (kDa)

5.29

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp21	PF04192	9 - 155	1.1e-26	Utp21 specific WD40 associated putative domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AcsI	RAATTY	3 cut(s)	124, 134, 189
AcuI	CTGAAG	3 cut(s)	86, 179, 350
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	1 cut(s)	306
AfeI	AGCGCT	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	4 cut(s)	95, 248, 401, 437
AjnI	CCWGG	2 cut(s)	171, 443
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	269
Aor51HI	AGCGCT	1 cut(s)	99
ApoI	RAATTY	3 cut(s)	124, 134, 189
Asp700I	GAANNNNTTC	2 cut(s)	252, 348
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	56, 218
AsuII	TTCGAA	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	73
BccI	CCATC	2 cut(s)	88, 172
BciT130I	CCWGG	2 cut(s)	173, 445
BclI	TGATCA	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	57, 392
BfmI	CTRYAG	2 cut(s)	111, 368
BfoI	RGCGCY	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	173, 445
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	173, 445
BmrI	ACTGGG	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	24
Bpu14I	TTCGAA	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	173, 445
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	167, 220
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	115
BspQI	GCTCTTC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	315
BssNI	GRCGYC	1 cut(s)	355
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	173, 445
Bst4CI	ACNGT	2 cut(s)	252, 477
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	283, 382
BstF5I	GGATG	2 cut(s)	167, 220
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	315
BstNI	CCWGG	2 cut(s)	173, 445
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	171, 443
BstSFI	CTRYAG	2 cut(s)	111, 368
BstXI	CCANNNNNNTGG	1 cut(s)	451
BtsCI	GGATG	2 cut(s)	167, 220
Cac8I	GCNNGC	2 cut(s)	283, 382
CfoI	GCGC	1 cut(s)	100
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	4 cut(s)	282, 338, 411, 451
CviJI	RGCY	3 cut(s)	10, 226, 311
CviKI_1	RGCY	3 cut(s)	10, 226, 311
CviQI	GTAC	1 cut(s)	305
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco47III	AGCGCT	1 cut(s)	99
Eco57I	CTGAAG	3 cut(s)	86, 179, 350
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	171, 443
FaeI	CATG	4 cut(s)	285, 341, 414, 454
FaiI	YATR	6 cut(s)	179, 269, 283, 339, 412, 452
FatI	CATG	4 cut(s)	281, 337, 410, 450
FbaI	TGATCA	1 cut(s)	315
FokI	GGATG	2 cut(s)	154, 227
FspBI	CTAG	2 cut(s)	57, 392
GlaI	GCGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	101
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	285, 341, 414, 454
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	50
HphI	GGTGA	2 cut(s)	56, 218
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	133, 198, 330
Hpy188III	TCNNGA	2 cut(s)	57, 363
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	252, 477
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	113, 281, 285, 405, 450
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	285, 341, 414, 454
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	315
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	8 cut(s)	59, 158, 185, 240, 304, 356, 430, 457
MaeI	CTAG	2 cut(s)	57, 392
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	6 cut(s)	59, 133, 185, 230, 233, 343
MfeI	CAATTG	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	6 cut(s)	124, 134, 189, 243, 292, 348
MnlI	CCTC	3 cut(s)	22, 25, 205
MroXI	GAANNNNTTC	2 cut(s)	252, 348
MseI	TTAA	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	173, 445
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	2 cut(s)	173, 445
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	4 cut(s)	285, 341, 414, 454
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	216
PdmI	GAANNNNTTC	2 cut(s)	252, 348
PfeI	GAWTC	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	171, 443
PspGI	CCWGG	2 cut(s)	171, 443
PspN4I	GGNNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	315
ScrFI	CCNGG	2 cut(s)	173, 445
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	5 cut(s)	43, 208, 313, 399, 449
SfcI	CTRYAG	2 cut(s)	111, 368
SfuI	TTCGAA	1 cut(s)	187
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	6 cut(s)	124, 134, 189, 243, 292, 348
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	57, 392
StyD4I	CCNGG	2 cut(s)	171, 443
TaaI	ACNGT	2 cut(s)	252, 477
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	187, 352
TasI	AATT	6 cut(s)	124, 134, 189, 243, 292, 348
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseFI	GTSAC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	134, 136, 231
XapI	RAATTY	3 cut(s)	124, 134, 189
XbaI	TCTAGA	1 cut(s)	56
XceI	RCATGY	1 cut(s)	285
XmnI	GAANNNNTTC	2 cut(s)	252, 348
XspI	CTAG	2 cut(s)	57, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.