Rh4BG076400

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001399
Physical Location & Seq
Reverse (-)
13488603 .. 13491800
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG076400.1

Sequence Viewer

Length: 768 bp
ATGCACCTGACCGCTCAGGCCGGAGTCCGGTACGTCATGGAGAACCCCTGCCCAGTCCACAGCAACATCGCCGGCCTCATTACACTTCTCGAGGCATGTAAATCGGCCATCGTCCGCCGTCGATTGTGTGGGCCTCGCCTGCCTTCTTCGTCGCTGGGTAGAGACTCGCCGGCTGATTCCTATGTAAGTGGAAAGCGAGTTGTGAGTGTTAAGTTGCCATCCGTCTCTTCGACAAAAGGTTCTGAAGCTGAGGATTCTGACGAGCCTGTCGGAAACTCTGCACAACTTAAAGATGCTTCTGCTCGTCCAACTCTTGTACAGCAAATTCCAGATCTTGTTACTCTCTCATCATATCCTAAAAGCCAGTGGCAAAGTTTAATCAACTTAGAGTACGTTATAAAGGAACGAAATAAACCGATTGAGCCCCCAAAGAAACCCAAAAAGGCTCCTTTCTTTTTGCCTTCAGTTCCTTCTCTTTCAGGAGAAATAATGTTTAAGCCTACTTGGTCAACAAATGAGGAGGCAAAAGGTGGTGAAGAATCATCTAGAATAAAGGCTGCTCTGACACCATCAATATTCCTTCAAGCGCTTCAGTCATCTGCAGAAATGAAGAATTTTTCAGAATTTACTGATTTCATCAAAACTTTGTCTCCATCATCCCTGGATATGGAACTTCGAATTCTTCATATTGTAGGTGATGAGGATGAAGAAGAGCCAGAAAATTGCTTCCAATTGAACTGCTTCTTGACTATTTTATACACGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

255

Amino Acids

28.04

Weight (kDa)

5.76

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp21 PF04192 108 - 237 2e-34 Utp21 specific WD40 associated putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AasI GACNNNNNNGTC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 14
AciI CCGC 2 cut(s) 12, 115
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 4 cut(s) 324, 613, 623, 678
AcuI CTGAAG 3 cut(s) 264, 447, 575
AfaI GTAC 3 cut(s) 32, 318, 392
AfeI AGCGCT 1 cut(s) 588
AfiI CCNNNNNNNGG 2 cut(s) 27, 667
AgsI TTSAA 2 cut(s) 584, 736
AjnI CCWGG 1 cut(s) 660
AluBI AGCT 2 cut(s) 248, 765
AluI AGCT 2 cut(s) 248, 765
Alw26I GTCTC 3 cut(s) 156, 229, 654
Ama87I CYCGRG 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 588
AoxI GGCC 4 cut(s) 18, 73, 105, 131
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 4 cut(s) 324, 613, 623, 678
Asp700I GAANNNNTTC 1 cut(s) 740
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 545, 707
AsuII TTCGAA 1 cut(s) 676
AvaI CYCGRG 1 cut(s) 89
BanII GRGCYC 1 cut(s) 426
BauI CACGAG 1 cut(s) 760
BbvCI CCTCAGC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 544
BccI CCATC 4 cut(s) 116, 226, 577, 661
BceAI ACGGC 1 cut(s) 102
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 662
BcoDI GTCTC 3 cut(s) 156, 229, 654
BfaI CTAG 2 cut(s) 546, 766
BfmI CTRYAG 1 cut(s) 600
BfoI RGCGCY 1 cut(s) 590
BglII AGATCT 1 cut(s) 331
BisI GCNGC 1 cut(s) 558
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 662
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 662
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 47
Bpu10I CCTNAGC 2 cut(s) 15, 249
Bpu14I TTCGAA 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 667
Bse118I RCCGGY 2 cut(s) 71, 169
Bse1I ACTGG 2 cut(s) 53, 364
BseBI CCWGG 1 cut(s) 662
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 3 cut(s) 218, 656, 709
BseLI CCNNNNNNNGG 2 cut(s) 27, 667
BseMII CTCAG 2 cut(s) 29, 240
BseNI ACTGG 2 cut(s) 53, 364
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 1 cut(s) 544
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 4 cut(s) 20, 75, 107, 133
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 4 cut(s) 21, 28, 72, 170
BslI CCNNNNNNNGG 2 cut(s) 27, 667
BsmAI GTCTC 3 cut(s) 156, 229, 654
BsmBI CGTCTC 1 cut(s) 229
BsnI GGCC 4 cut(s) 20, 75, 107, 133
BsoBI CYCGRG 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 676
Bsp1286I GDGCHC 1 cut(s) 426
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 2 cut(s) 12, 115
BspANI GGCC 4 cut(s) 20, 75, 107, 133
BspCNI CTCAG 2 cut(s) 28, 241
BspLI GGNNCC 1 cut(s) 447
BspMAI CTGCAG 1 cut(s) 604
BspQI GCTCTTC 1 cut(s) 705
BspT104I TTCGAA 1 cut(s) 676
BsrBI CCGCTC 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 71, 169
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 2 cut(s) 53, 364
BssAI RCCGGY 2 cut(s) 71, 169
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 1 cut(s) 331
BssSI CACGAG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 760
Bst2UI CCWGG 1 cut(s) 662
Bst6I CTCTTC 2 cut(s) 232, 705
BstAUI TGTACA 1 cut(s) 316
BstBI TTCGAA 1 cut(s) 676
BstC8I GCNNGC 3 cut(s) 73, 140, 171
BstDEI CTNAG 3 cut(s) 15, 249, 385
BstF5I GGATG 3 cut(s) 218, 656, 709
BstH2I RGCGCY 1 cut(s) 590
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 3 cut(s) 156, 229, 654
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 662
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 660
BstSFI CTRYAG 1 cut(s) 600
BstV1I GCAGC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 4 cut(s) 20, 75, 107, 133
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 3 cut(s) 218, 656, 709
BtsIMutI CAGTG 1 cut(s) 371
Cac8I GCNNGC 3 cut(s) 73, 140, 171
CfoI GCGC 1 cut(s) 589
Cfr10I RCCGGY 2 cut(s) 71, 169
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 3 cut(s) 31, 317, 391
CviAII CATG 2 cut(s) 37, 96
CviQI GTAC 3 cut(s) 31, 317, 391
DdeI CTNAG 3 cut(s) 15, 249, 385
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 232, 705
EarI CTCTTC 2 cut(s) 232, 705
EciI GGCGGA 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 426
Eco47III AGCGCT 1 cut(s) 588
Eco57I CTGAAG 3 cut(s) 264, 447, 575
Eco88I CYCGRG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 2 cut(s) 40, 99
FaiI YATR 8 cut(s) 38, 97, 183, 352, 398, 668, 687, 757
FatI CATG 2 cut(s) 36, 95
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 3 cut(s) 205, 643, 716
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 2 cut(s) 546, 766
GlaI GCGC 1 cut(s) 588
GluI GCNGC 1 cut(s) 558
GsaI CCCAGC 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 590
HaeIII GGCC 4 cut(s) 20, 75, 107, 133
HapII CCGG 4 cut(s) 21, 28, 72, 170
HhaI GCGC 1 cut(s) 589
Hin1II CATG 2 cut(s) 40, 99
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 5 cut(s) 24, 164, 176, 254, 539
HpaII CCGG 4 cut(s) 21, 28, 72, 170
HphI GGTGA 2 cut(s) 545, 707
Hpy166II GTNNAC 2 cut(s) 58, 510
Hpy188I TCNGA 5 cut(s) 244, 259, 272, 564, 622
Hpy188III TCNNGA 5 cut(s) 89, 329, 480, 546, 745
Hpy8I GTNNAC 2 cut(s) 58, 510
Hpy99I CGWCG 2 cut(s) 123, 154
HpyAV CCTTC 4 cut(s) 153, 471, 480, 590
HpyCH4IV ACGT 2 cut(s) 33, 393
HpyCH4V TGCA 3 cut(s) 4, 281, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 3 cut(s) 15, 249, 385
HpySE526I ACGT 2 cut(s) 33, 393
Hsp92II CATG 2 cut(s) 40, 99
HspAI GCGC 1 cut(s) 587
KroI GCCGGC 2 cut(s) 71, 169
KroNI GCCGGC 2 cut(s) 73, 171
Kzo9I GATC 1 cut(s) 331
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 546, 766
MaeII ACGT 2 cut(s) 33, 393
MaeIII GTNAC 1 cut(s) 337
MalI GATC 1 cut(s) 333
MbiI CCGCTC 1 cut(s) 14
MboI GATC 1 cut(s) 331
MboII GAAGA 7 cut(s) 138, 219, 548, 622, 674, 719, 722
MfeI CAATTG 1 cut(s) 731
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 6 cut(s) 324, 613, 623, 678, 721, 731
MlyI GAGTC 2 cut(s) 33, 158
MmeI TCCRAC 2 cut(s) 250, 332
MnlI CCTC 7 cut(s) 85, 86, 144, 244, 511, 514, 694
MroNI GCCGGC 2 cut(s) 71, 169
MroXI GAANNNNTTC 1 cut(s) 740
MseI TTAA 4 cut(s) 210, 288, 377, 495
MspI CCGG 4 cut(s) 21, 28, 72, 170
MspR9I CCNGG 1 cut(s) 662
MunI CAATTG 1 cut(s) 731
MvaI CCWGG 1 cut(s) 662
MwoI GCNNNNNNNGC 1 cut(s) 139
NaeI GCCGGC 2 cut(s) 73, 171
NdeII GATC 1 cut(s) 331
NgoMIV GCCGGC 2 cut(s) 71, 169
NlaIII CATG 2 cut(s) 40, 99
NlaIV GGNNCC 1 cut(s) 447
NspI RCATGY 1 cut(s) 99
NspV TTCGAA 1 cut(s) 676
PaeR7I CTCGAG 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 705
PdiI GCCGGC 2 cut(s) 73, 171
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 3 cut(s) 176, 254, 539
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 2 cut(s) 32, 158
PpsI GAGTC 2 cut(s) 32, 158
PsiI TTATAA 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 660
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 604
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 3 cut(s) 32, 318, 392
RsaNI GTAC 3 cut(s) 31, 317, 391
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 4 cut(s) 210, 288, 377, 495
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 2 cut(s) 33, 158
ScrFI CCNGG 1 cut(s) 662
SduI GDGCHC 1 cut(s) 426
SetI ASST 8 cut(s) 9, 36, 241, 250, 396, 532, 697, 767
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 600
Sfr274I CTCGAG 1 cut(s) 89
SfuI TTCGAA 1 cut(s) 676
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 6 cut(s) 324, 613, 623, 678, 721, 731
SsiI CCGC 2 cut(s) 12, 115
SspI AATATT 1 cut(s) 576
SspMI CTAG 2 cut(s) 546, 766
StyD4I CCNGG 1 cut(s) 660
TaiI ACGT 2 cut(s) 36, 396
TaqI TCGA 4 cut(s) 90, 121, 230, 676
TasI AATT 6 cut(s) 324, 613, 623, 678, 721, 731
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 3 cut(s) 176, 254, 539
Tru1I TTAA 4 cut(s) 210, 288, 377, 495
Tru9I TTAA 4 cut(s) 210, 288, 377, 495
TscAI CASTG 1 cut(s) 371
TseI GCWGC 1 cut(s) 557
TspDTI ATGAA 4 cut(s) 623, 625, 674, 720
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 371
XapI RAATTY 4 cut(s) 324, 613, 623, 678
XbaI TCTAGA 1 cut(s) 545
XceI RCATGY 1 cut(s) 99
XhoI CTCGAG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 2 cut(s) 546, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.