Rmu_sc0003929.1_g000014

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003929.1
OG0001399
Physical Location & Seq
Forward (+)
70363 .. 71800
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003929.1_g000014.1.cds

Sequence Viewer

Length: 648 bp
atgggaatcttcgagcccttcagagcaatcggctacaccaccacctccgtccccttctccgttcagcgcctcggcactgaagccttcgtcaccgtcagcgtcggcaaagccttccaaatttacaattgcgcaaagctcactctggtcctcgtcggtccgcaattgccgaagaagattcgagctcttgcttcgtatcgggactacacattcgctgcgtatgggactgatatagctgtttttaagagatctcatcaggttggtcgctacgtggagcatatcccaagtgttgatgttgaaggtaatctgtatatatggacatttaaaggaattgatgagaatcttgatctggttggacatattaagttggacgaaaattttactcctagctgtataatgcatccggatacctacttaaataagtctcctgcactagatgttgttgcagttggttgtgctgatggaaaaattcatgttcacaacatacgatatgatgaagagttagtgacgtttactcattcaacacgaggtgctgtgactgccttatctttctgcacaggtaacaacgtcaggctgttggtttataatactaattctttgtgcagtactgttttacatgatgctactggattattattattattttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

215

Amino Acids

23.77

Weight (kDa)

6.69

Isoelectric Point (pI)

22.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
Acc16I TGCGCA 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 1 cut(s) 158
AcsI RAATTY 3 cut(s) 117, 373, 465
AcuI CTGAAG 2 cut(s) 4, 99
AdeI CACNNNGTG 1 cut(s) 527
AfaI GTAC 1 cut(s) 604
AgsI TTSAA 2 cut(s) 296, 519
AluBI AGCT 4 cut(s) 136, 182, 233, 387
AluI AGCT 4 cut(s) 136, 182, 233, 387
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 426
Aor13HI TCCGGA 1 cut(s) 400
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 3 cut(s) 117, 373, 465
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspLEI GCGC 2 cut(s) 69, 131
AspS9I GGNCC 2 cut(s) 145, 155
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 145, 155
BanII GRGCYC 2 cut(s) 18, 184
BauI CACGAG 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 452
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 2 cut(s) 384, 431
BfoI RGCGCY 1 cut(s) 70
BfuI GTATCC 1 cut(s) 397
BglII AGATCT 1 cut(s) 245
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmcAI AGTACT 1 cut(s) 604
Bme18I GGWCC 2 cut(s) 145, 155
BmgT120I GGNCC 2 cut(s) 145, 155
BmsI GCATC 2 cut(s) 406, 607
BsaAI YACGTR 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 628
Bse8I GATNNNNATC 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 336
BseNI ACTGG 1 cut(s) 628
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 3 cut(s) 411, 535, 619
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 401
BslFI GGGAC 3 cut(s) 35, 212, 235
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 3 cut(s) 35, 212, 235
Bsp1286I GDGCHC 2 cut(s) 18, 184
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 2 cut(s) 245, 343
BspACI CCGC 1 cut(s) 158
BspEI TCCGGA 1 cut(s) 400
BsrI ACTGG 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 2 cut(s) 245, 343
BssSI CACGAG 1 cut(s) 522
Bst2BI CACGAG 1 cut(s) 522
Bst4CI ACNGT 2 cut(s) 94, 607
Bst6I CTCTTC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 397
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 2 cut(s) 69, 131
BstKTI GATC 2 cut(s) 248, 346
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 2 cut(s) 245, 343
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuI GTATCC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 2 cut(s) 69, 131
Cfr13I GGNCC 2 cut(s) 145, 155
CpoI CGGWCCG 1 cut(s) 155
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 603
CspI CGGWCCG 1 cut(s) 155
CviAII CATG 2 cut(s) 470, 614
CviJI RGCY 9 cut(s) 16, 33, 83, 110, 136, 182, 233, 387, 571
CviKI_1 RGCY 9 cut(s) 16, 33, 83, 110, 136, 182, 233, 387, 571
CviQI GTAC 1 cut(s) 603
DdeI CTNAG 1 cut(s) 645
DpnI GATC 2 cut(s) 247, 345
DpnII GATC 2 cut(s) 245, 343
DraI TTTAAA 1 cut(s) 322
DraIII CACNNNGTG 1 cut(s) 527
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 2 cut(s) 18, 184
Eco47I GGWCC 2 cut(s) 145, 155
Eco53kI GAGCTC 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 4, 99
EcoICRI GAGCTC 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 399
EcoT38I GRGCYC 2 cut(s) 18, 184
FaeI CATG 2 cut(s) 473, 617
FaqI GGGAC 3 cut(s) 35, 212, 235
FatI CATG 2 cut(s) 469, 613
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 384
FriOI GRGCYC 2 cut(s) 18, 184
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 384, 431
FspI TGCGCA 1 cut(s) 130
GlaI GCGC 2 cut(s) 68, 130
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 70
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 88
HhaI GCGC 2 cut(s) 69, 131
Hin1II CATG 2 cut(s) 473, 617
Hin6I GCGC 2 cut(s) 67, 129
HinP1I GCGC 2 cut(s) 67, 129
HinfI GANTC 3 cut(s) 6, 175, 337
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 475, 510
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 197, 341, 401
Hpy8I GTNNAC 2 cut(s) 475, 510
Hpy99I CGWCG 2 cut(s) 104, 155
HpyAV CCTTC 5 cut(s) 28, 64, 94, 121, 290
HpyCH4III ACNGT 2 cut(s) 94, 607
HpyCH4IV ACGT 3 cut(s) 267, 506, 564
HpyCH4V TGCA 5 cut(s) 397, 428, 443, 552, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 3 cut(s) 267, 506, 564
Hsp92II CATG 2 cut(s) 473, 617
HspAI GCGC 2 cut(s) 67, 129
Kpn2I TCCGGA 1 cut(s) 400
Kzo9I GATC 2 cut(s) 245, 343
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 8 cut(s) 128, 239, 332, 414, 438, 540, 553, 609
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 2 cut(s) 406, 607
MaeI CTAG 2 cut(s) 384, 431
MaeII ACGT 3 cut(s) 267, 506, 564
MaeIII GTNAC 4 cut(s) 88, 502, 532, 557
MalI GATC 2 cut(s) 247, 345
MboI GATC 2 cut(s) 245, 343
MboII GAAGA 3 cut(s) 181, 184, 506
MfeI CAATTG 2 cut(s) 124, 161
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 2 cut(s) 18, 184
MluCI AATT 7 cut(s) 117, 124, 161, 327, 373, 465, 589
MmeI TCCRAC 2 cut(s) 331, 345
MnlI CCTC 4 cut(s) 55, 80, 158, 518
Mph1103I ATGCAT 1 cut(s) 399
MroI TCCGGA 1 cut(s) 400
MseI TTAA 4 cut(s) 240, 321, 360, 413
MspI CCGG 1 cut(s) 401
MunI CAATTG 2 cut(s) 124, 161
MwoI GCNNNNNNNGC 1 cut(s) 536
NdeII GATC 2 cut(s) 245, 343
NlaIII CATG 2 cut(s) 473, 617
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 3 cut(s) 88, 502, 532
NsbI TGCGCA 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 399
PfeI GAWTC 3 cut(s) 6, 175, 337
PkrI GCNGC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 268
PsiI TTATAA 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 145, 155
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 604
RsaNI GTAC 1 cut(s) 603
Rsr2I CGGWCCG 1 cut(s) 155
RsrII CGGWCCG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 4 cut(s) 240, 321, 360, 413
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 245, 343
Sau96I GGNCC 2 cut(s) 145, 155
ScaI AGTACT 1 cut(s) 604
SduI GDGCHC 2 cut(s) 18, 184
SfaNI GCATC 2 cut(s) 406, 607
SinI GGWCC 2 cut(s) 145, 155
Sse9I AATT 7 cut(s) 117, 124, 161, 327, 373, 465, 589
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 384, 431
SstI GAGCTC 1 cut(s) 184
TaaI ACNGT 2 cut(s) 94, 607
TaiI ACGT 3 cut(s) 270, 509, 567
TaqI TCGA 2 cut(s) 12, 178
TaqII GACCGA 1 cut(s) 143
TasI AATT 7 cut(s) 117, 124, 161, 327, 373, 465, 589
TatI WGTACW 1 cut(s) 602
TfiI GAWTC 3 cut(s) 6, 175, 337
Tru1I TTAA 4 cut(s) 240, 321, 360, 413
Tru9I TTAA 4 cut(s) 240, 321, 360, 413
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 3 cut(s) 88, 502, 532
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 3 cut(s) 88, 502, 532
TspDTI ATGAA 2 cut(s) 458, 507
TspGWI ACGGA 2 cut(s) 37, 49
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 145, 155
XapI RAATTY 3 cut(s) 117, 373, 465
XspI CTAG 2 cut(s) 384, 431
ZrmI AGTACT 1 cut(s) 604
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.