Rh4BG073900

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001399
Physical Location & Seq
Reverse (-)
13003361 .. 13021641
18281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG073900.1

Sequence Viewer

Length: 858 bp
ATGGCAAACGTGTTGGAACTATCAGGAGGCTGCATTGTTTTTTTTCATGAGGTCTGGGATTTCAAGGGACGTGGAGTGCCATCTAGATGGGAAGTTGGGAGCTCTGTTGTCAGGATTGTATTCAATCGCTTGAATGGTCTTTTGGCTGTTGCGGCTGATGACTTAATTATCCGCTTGTTTGATGTTGTGGCATCAAGAATGGTTCGTAAATTTGAAGGCCATACTGATCGTGTTACAGACATGTGTTTTAGTGAGGATGGAAAATGGCTTTTGTCTTCCAGTACGGATGGAAGTCTTCGAGTTTGGGATGTTATCTTAGCAAGACAAATAGATGCGTTGCATGTTGATGTGTCTGTGACTGCATTGTCTCTATCACCAAATATGGATATTTTAGCGACCTCCCATGTTGATCAAAATGGGGTCTATCTTTGGGTGAATCAATCAATGTTTTCGGGAGCTTCAAAGGAACGAAATAAACCGATTGAGCCCCCAAAGAAACCCGAAAAGGCTCCTTTATTTTTGCCTTCAGTTCCATCTCTTTCAGGAGAAATAATGTTTAAGCCTACTGGGTCGACAAATGAGGAGGCAAATGGTGGTGAAGAATCATCTAGAATAAAGGCTGCTCTAGCACCATCAATATTCCTTCAAGCGCTTCAGTCATCTGCAGAAATGAAGAATTTTGCAGTTTCAGAATTTACTGATTTCATCAAAACTTTGTCTCCATCATCCCTGGATATGGAACTTCGAATTCTTCAGATTGTGGGTGATGAGGATGAAGAAGAGTCAGAAAAGTTGCTTCCAATTGAACTGCTTCTCGACTATTTTATACACGAGACTGCATGCAGAAACAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

285

Amino Acids

31.61

Weight (kDa)

4.83

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_2nd PF25168 18 - 155 7.1e-45 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 34 - 139 7.4e-18 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 34 - 144 1.2e-17 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 34 - 133 3.6e-14 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 34 - 115 8.1e-13 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 34 - 149 8.2e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 34 - 103 5.1e-06 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 34 - 103 1.6e-07 MABP1/WDR62 second WD40 domain
EIF3I PF24805 36 - 132 1.8e-06 EIF3I
Beta-prop_EML_2 PF23414 36 - 110 2.5e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 36 - 145 3.1e-07 WDR36/Utp21 first beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 39 - 136 1.9e-08 WDR90/POC16, second beta-propeller
WDR55 PF24796 46 - 104 3e-07 WDR55
WD40_Prp19 PF24814 47 - 135 1e-11 Prp19 WD40 domain
Beta-prop_WDR75_1st PF23869 51 - 127 3.5e-06 WD repeat-containing protein 75 first beta-propeller
WD40 PF00400 67 - 103 3e-12 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 68 - 150 7.5e-08 CAF1B/HIR1 beta-propeller domain
Utp21 PF04192 155 - 258 3.8e-19 Utp21 specific WD40 associated putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 572
AciI CCGC 2 cut(s) 152, 172
AcsI RAATTY 4 cut(s) 209, 676, 692, 747
AcuI CTGAAG 3 cut(s) 510, 638, 737
AfaI GTAC 1 cut(s) 283
AfeI AGCGCT 1 cut(s) 651
AfiI CCNNNNNNNGG 1 cut(s) 736
AflIII ACRYGT 2 cut(s) 9, 240
AgsI TTSAA 7 cut(s) 64, 124, 133, 215, 462, 647, 806
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 1 cut(s) 729
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 2 cut(s) 102, 458
AluI AGCT 2 cut(s) 102, 458
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 3 cut(s) 372, 723, 827
Aor51HI AGCGCT 1 cut(s) 651
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 30, 620
ApoI RAATTY 4 cut(s) 209, 676, 692, 747
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 1 cut(s) 652
AsuHPI GGTGA 4 cut(s) 366, 445, 608, 776
AsuII TTCGAA 1 cut(s) 745
BanII GRGCYC 2 cut(s) 104, 489
BauI CACGAG 1 cut(s) 830
BbsI GAAGAC 2 cut(s) 267, 287
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 17, 607
BccI CCATC 7 cut(s) 81, 88, 251, 281, 541, 640, 730
BciT130I CCWGG 1 cut(s) 731
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 3 cut(s) 372, 723, 827
BfaI CTAG 3 cut(s) 84, 609, 626
BfmI CTRYAG 1 cut(s) 663
BfoI RGCGCY 1 cut(s) 653
BisI GCNGC 3 cut(s) 31, 153, 621
BlsI GCNGC 3 cut(s) 32, 154, 622
Bme1390I CCNGG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 2 cut(s) 200, 322
BmuI ACTGGG 1 cut(s) 576
BpiI GAAGAC 2 cut(s) 267, 287
Bpu14I TTCGAA 1 cut(s) 745
BsaJI CCNNGG 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse1I ACTGG 2 cut(s) 279, 571
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 5 cut(s) 262, 292, 313, 725, 778
BseLI CCNNNNNNNGG 1 cut(s) 736
BseNI ACTGG 2 cut(s) 279, 571
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 2 cut(s) 17, 607
BshFI GGCC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 104
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 736
BsmAI GTCTC 3 cut(s) 372, 723, 827
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 745
Bsp1286I GDGCHC 2 cut(s) 104, 489
Bsp143I GATC 2 cut(s) 226, 409
BspACI CCGC 2 cut(s) 152, 172
BspANI GGCC 1 cut(s) 219
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 745
BsrI ACTGG 2 cut(s) 279, 571
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 2 cut(s) 226, 409
BssSI CACGAG 1 cut(s) 830
Bst2BI CACGAG 1 cut(s) 830
Bst2UI CCWGG 1 cut(s) 731
Bst6I CTCTTC 1 cut(s) 774
BstBI TTCGAA 1 cut(s) 745
BstC8I GCNNGC 1 cut(s) 841
BstDEI CTNAG 1 cut(s) 316
BstF5I GGATG 5 cut(s) 262, 292, 313, 725, 778
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 2 cut(s) 229, 412
BstMAI GTCTC 3 cut(s) 372, 723, 827
BstMBI GATC 2 cut(s) 226, 409
BstMWI GCNNNNNNNGC 2 cut(s) 152, 626
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 3 cut(s) 244, 344, 843
BstSCI CCNGG 1 cut(s) 729
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 2 cut(s) 17, 607
BstV2I GAAGAC 2 cut(s) 267, 287
BstXI CCANNNNNNTGG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 219
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 5 cut(s) 262, 292, 313, 725, 778
Cac8I GCNNGC 1 cut(s) 841
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 652
Csp6I GTAC 1 cut(s) 282
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 5 cut(s) 47, 241, 341, 404, 840
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 316
DpnI GATC 2 cut(s) 228, 411
DpnII GATC 2 cut(s) 226, 409
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
Ecl136II GAGCTC 1 cut(s) 102
Eco24I GRGCYC 2 cut(s) 104, 489
Eco47III AGCGCT 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 102
Eco57I CTGAAG 3 cut(s) 510, 638, 737
EcoICRI GAGCTC 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 747
EcoRII CCWGG 1 cut(s) 729
EcoT38I GRGCYC 2 cut(s) 104, 489
FaeI CATG 5 cut(s) 50, 244, 344, 407, 843
FaqI GGGAC 1 cut(s) 81
FatI CATG 5 cut(s) 46, 240, 340, 403, 839
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 572
Fnu4HI GCNGC 3 cut(s) 31, 153, 621
FokI GGATG 5 cut(s) 269, 299, 320, 712, 785
FriOI GRGCYC 2 cut(s) 104, 489
Fsp4HI GCNGC 3 cut(s) 31, 153, 621
FspBI CTAG 3 cut(s) 84, 609, 626
GlaI GCGC 1 cut(s) 651
GluI GCNGC 3 cut(s) 31, 153, 621
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 1 cut(s) 219
HhaI GCGC 1 cut(s) 652
Hin1II CATG 5 cut(s) 50, 244, 344, 407, 843
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 3 cut(s) 436, 602, 782
HphI GGTGA 4 cut(s) 366, 445, 608, 776
Hpy166II GTNNAC 1 cut(s) 573
Hpy188I TCNGA 3 cut(s) 691, 756, 787
Hpy188III TCNNGA 9 cut(s) 24, 47, 84, 112, 195, 453, 543, 609, 815
Hpy8I GTNNAC 1 cut(s) 573
HpyAV CCTTC 3 cut(s) 209, 534, 653
HpyCH4IV ACGT 2 cut(s) 9, 70
HpyCH4V TGCA 7 cut(s) 33, 340, 362, 665, 683, 839, 843
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 626
HpyF3I CTNAG 1 cut(s) 316
HpySE526I ACGT 2 cut(s) 9, 70
Hsp92II CATG 5 cut(s) 50, 244, 344, 407, 843
HspAI GCGC 1 cut(s) 650
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 2 cut(s) 226, 409
LmnI GCTCC 3 cut(s) 99, 455, 514
LpnPI CCDG 8 cut(s) 9, 40, 97, 292, 528, 552, 716, 743
Lsp1109I GCAGC 2 cut(s) 17, 607
LweI GCATC 2 cut(s) 200, 322
MaeI CTAG 3 cut(s) 84, 609, 626
MaeII ACGT 2 cut(s) 9, 70
MaeIII GTNAC 2 cut(s) 232, 355
MalI GATC 2 cut(s) 228, 411
MboI GATC 2 cut(s) 226, 409
MboII GAAGA 7 cut(s) 267, 287, 611, 685, 743, 788, 791
MfeI CAATTG 1 cut(s) 801
MhlI GDGCHC 2 cut(s) 104, 489
MluCI AATT 7 cut(s) 165, 209, 676, 692, 747, 801, 850
MlyI GAGTC 1 cut(s) 791
MnlI CCTC 7 cut(s) 20, 43, 247, 409, 574, 577, 763
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 2 cut(s) 164, 558
MslI CAYNNNNRTG 2 cut(s) 85, 345
MspR9I CCNGG 1 cut(s) 731
MunI CAATTG 1 cut(s) 801
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 2 cut(s) 152, 626
NdeII GATC 2 cut(s) 226, 409
NlaIII CATG 5 cut(s) 50, 244, 344, 407, 843
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 3 cut(s) 244, 344, 843
NspV TTCGAA 1 cut(s) 745
PaeI GCATGC 1 cut(s) 843
PagI TCATGA 1 cut(s) 46
PciI ACATGT 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 2 cut(s) 436, 602
PkrI GCNGC 3 cut(s) 32, 154, 622
PleI GAGTC 1 cut(s) 790
PpsI GAGTC 1 cut(s) 790
PscI ACATGT 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 1 cut(s) 510
PstI CTGCAG 1 cut(s) 667
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 2 cut(s) 85, 345
SacI GAGCTC 1 cut(s) 104
SalI GTCGAC 1 cut(s) 571
SaqAI TTAA 2 cut(s) 164, 558
SatI GCNGC 3 cut(s) 31, 153, 621
Sau3AI GATC 2 cut(s) 226, 409
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 2 cut(s) 104, 489
SetI ASST 6 cut(s) 12, 54, 73, 104, 401, 460
SfaNI GCATC 2 cut(s) 200, 322
SfcI CTRYAG 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 745
SmiMI CAYNNNNRTG 2 cut(s) 85, 345
SphI GCATGC 1 cut(s) 843
Sse9I AATT 7 cut(s) 165, 209, 676, 692, 747, 801, 850
SsiI CCGC 2 cut(s) 152, 172
SspI AATATT 1 cut(s) 639
SspMI CTAG 3 cut(s) 84, 609, 626
SstI GAGCTC 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 729
TaiI ACGT 2 cut(s) 12, 73
TaqI TCGA 4 cut(s) 298, 572, 745, 816
TasI AATT 7 cut(s) 165, 209, 676, 692, 747, 801, 850
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 436, 602
Tru1I TTAA 2 cut(s) 164, 558
Tru9I TTAA 2 cut(s) 164, 558
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 30, 620
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 4 cut(s) 35, 686, 694, 789
TspGWI ACGGA 1 cut(s) 299
XapI RAATTY 4 cut(s) 209, 676, 692, 747
XbaI TCTAGA 2 cut(s) 83, 608
XceI RCATGY 3 cut(s) 244, 344, 843
XmiI GTMKAC 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 3 cut(s) 84, 609, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.