Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

15926094 .. 15926508

Gene Structure 415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG078300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGATGGAAATCTTCAAGTTTGGGATGTCATCTTAGCAAGACAAATCGATGCATTGCATGTTGATGTGTCTGTGACGGCACTGTCTCTATCACCGAATATGGATATTTTAGCGACCTCCCATGTTGATCAAAATGGGGCTATCTTCGTTTCAGAATTTACTGATTTCATCAAAACTTTGTCTCCAACATCCCTGGATATGGAACTTCGAATTCTTCAGATTGTGGGTGATGAGGATGAAGAAGAGTCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

84

Amino Acids

9.3

Weight (kDa)

4.05

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	1 - 56	9.4e-10	WDR36/Utp21 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	155, 210
AcuI	CTGAAG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	90, 186
ApoI	RAATTY	2 cut(s)	155, 210
AsuHPI	GGTGA	2 cut(s)	84, 239
AsuII	TTCGAA	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	90, 186
Bme1390I	CCNGG	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	4 cut(s)	10, 31, 188, 241
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	90, 186
Bsp119I	TTCGAA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	127
BspDI	ATCGAT	1 cut(s)	48
BspT104I	TTCGAA	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	4 cut(s)	10, 31, 188, 241
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	2 cut(s)	90, 186
BstMBI	GATC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	48
BtsCI	GGATG	4 cut(s)	10, 31, 188, 241
BtsIMutI	CAGTG	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	48
CviAII	CATG	2 cut(s)	59, 122
CviJI	RGCY	1 cut(s)	140
CviKI_1	RGCY	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	55
FaeI	CATG	2 cut(s)	62, 125
FaiI	YATR	4 cut(s)	60, 101, 123, 200
FatI	CATG	2 cut(s)	58, 121
FbaI	TGATCA	1 cut(s)	127
FokI	GGATG	4 cut(s)	17, 38, 175, 248
Hin1II	CATG	2 cut(s)	62, 125
HinfI	GANTC	1 cut(s)	245
HphI	GGTGA	2 cut(s)	84, 239
Hpy188I	TCNGA	3 cut(s)	154, 219, 250
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	53, 58
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	62, 125
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	2 cut(s)	179, 206
LweI	GCATC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	5 cut(s)	5, 136, 206, 251, 254
MluCI	AATT	2 cut(s)	155, 210
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	127, 226
Mph1103I	ATGCAT	1 cut(s)	55
MslI	CAYNNNNRTG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	62, 125
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	208
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	208
SgeI	CNNG	6 cut(s)	29, 51, 71, 134, 205, 206
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	155, 210
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	48, 208
TasI	AATT	2 cut(s)	155, 210
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	157, 252
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	155, 210
XceI	RCATGY	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.