Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

13273180 .. 13277283

Gene Structure 4104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCATAAGGTTTTTTGCAAATGGGAGACACATCTATCAGCTGGTCAGGATCGTGCCTTTCGCCTTTTCTCTATAATCCAGGATCAACAAAGTAGAGAGCTTTCTCAACGTCATATAACAAAACGAGCGAAGAAACTCAGGGTGAAGGAGGAAGAGATAAAACTGAAACCTGTCATTGCTTTTGATTGTGCTGAAATAAGAGAGCGAGATTGGTGCAATGTTGTTACATGTCATATGGATACTGCACAGACATATGTCTGGAGACTTCAAAACTTTGTTCTTGGGGAGCATATTCTGAAACCAAGACCAGAAAACCCAACACCTGTGAAGGCCTGTGCCATCAGTGAATGTGGAAATTTTGCCATACTAGGGACAGCTGGTGGTTGGATTGAGCGGATCAACCTGCAGTCAGGAAGCAGCCGATGTAGTTATGTGGACCCATCGGAAAGAAGCATCTGTGCCCATGATGGGGAAGTTGTTGGAATTGCTTGTGATTCAACTAATACTCACATGATAAGTGCTGGATATCATGGAGACATAAAGGTCTGGGATTTCAAGGGACGTGGAGTGCCATCTAGATGGGTAGTTGGGAGCTCTGTTGTCAGGATTGTATTCAATCGCTTGAATGGTCTTTTGGCTGTTGCGGCTGATGACTTAATTATCCGCTTGTTTGATGTTGTGGCATTAAGAATGGTTCGTAAATTTGAAGGCCATACTGATCGTGTTACAGACGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

246

Amino Acids

27.88

Weight (kDa)

8.74

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	12 - 245	2.8e-64	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	113 - 245	9.9e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	394
AciI	CCGC	3 cut(s)	394, 644, 664
AclWI	GGATC	3 cut(s)	57, 90, 404
AcsI	RAATTY	2 cut(s)	355, 701
AfiI	CCNNNNNNNGG	3 cut(s)	369, 468, 469
AflIII	ACRYGT	2 cut(s)	227, 732
AgsI	TTSAA	6 cut(s)	269, 498, 556, 616, 625, 707
AjiI	CACGTC	2 cut(s)	563, 733
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	4 cut(s)	41, 100, 377, 594
AluI	AGCT	4 cut(s)	41, 100, 377, 594
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	3 cut(s)	20, 256, 528
AlwI	GGATC	3 cut(s)	57, 90, 404
AoxI	GGCC	2 cut(s)	330, 709
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	2 cut(s)	355, 701
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	5 cut(s)	347, 448, 461, 573, 580
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	20, 256, 528
BfaI	CTAG	2 cut(s)	368, 576
BfmI	CTRYAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	418, 645
BlsI	GCNGC	2 cut(s)	419, 646
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	436
BmgBI	CACGTC	2 cut(s)	563, 733
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	462
BoxI	GACNNNNGTC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	3 cut(s)	369, 468, 469
Bse3DI	GCAATG	2 cut(s)	174, 223
BseBI	CCWGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	369, 468, 469
BseMI	GCAATG	2 cut(s)	174, 223
BseMII	CTCAG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	332, 711
BsiHKAI	GWGCWC	1 cut(s)	596
BslFI	GGGAC	2 cut(s)	385, 573
BslI	CCNNNNNNNGG	3 cut(s)	369, 468, 469
BsmAI	GTCTC	3 cut(s)	20, 256, 528
BsmFI	GGGAC	2 cut(s)	385, 573
BsnI	GGCC	2 cut(s)	332, 711
Bsp1286I	GDGCHC	2 cut(s)	463, 596
Bsp143I	GATC	4 cut(s)	49, 82, 396, 718
BspACI	CCGC	3 cut(s)	394, 644, 664
BspANI	GGCC	2 cut(s)	332, 711
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	408
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	57, 90, 404
BsrBI	CCGCTC	1 cut(s)	394
BsrDI	GCAATG	2 cut(s)	174, 223
BssMI	GATC	4 cut(s)	49, 82, 396, 718
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	137
BstKTI	GATC	4 cut(s)	52, 85, 399, 721
BstMAI	GTCTC	3 cut(s)	20, 256, 528
BstMBI	GATC	4 cut(s)	49, 82, 396, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	231
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	404
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	429
BstXI	CCANNNNNNTGG	1 cut(s)	579
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	332, 711
BtrI	CACGTC	2 cut(s)	563, 733
BtsIMutI	CAGTG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	411
Cfr13I	GGNCC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	4 cut(s)	228, 464, 511, 530
CviJI	RGCY	9 cut(s)	41, 100, 332, 377, 420, 594, 638, 647, 711
CviKI_1	RGCY	9 cut(s)	41, 100, 332, 377, 420, 594, 638, 647, 711
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	4 cut(s)	51, 84, 398, 720
DpnII	GATC	4 cut(s)	49, 82, 396, 718
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	596
Eco32I	GATATC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	78
EcoRV	GATATC	1 cut(s)	527
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	596
FaeI	CATG	4 cut(s)	231, 467, 514, 533
FaqI	GGGAC	2 cut(s)	385, 573
FatI	CATG	4 cut(s)	227, 463, 510, 529
FauNDI	CATATG	2 cut(s)	234, 253
Fnu4HI	GCNGC	2 cut(s)	418, 645
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	2 cut(s)	418, 645
FspBI	CTAG	2 cut(s)	368, 576
GluI	GCNGC	2 cut(s)	418, 645
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	332, 711
Hin1II	CATG	4 cut(s)	231, 467, 514, 533
HinfI	GANTC	1 cut(s)	494
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	297, 445
Hpy188III	TCNNGA	5 cut(s)	47, 259, 411, 576, 604
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	3 cut(s)	139, 322, 701
HpyCH4IV	ACGT	3 cut(s)	109, 562, 732
HpyCH4V	TGCA	5 cut(s)	4, 18, 216, 245, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	3 cut(s)	109, 562, 732
Hsp92II	CATG	4 cut(s)	231, 467, 514, 533
Kzo9I	GATC	4 cut(s)	49, 82, 396, 718
LmnI	GCTCC	2 cut(s)	286, 591
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	2 cut(s)	368, 576
MaeII	ACGT	3 cut(s)	109, 562, 732
MaeIII	GTNAC	2 cut(s)	223, 724
MalI	GATC	4 cut(s)	51, 84, 398, 720
MbiI	CCGCTC	1 cut(s)	394
MboI	GATC	4 cut(s)	49, 82, 396, 718
MboII	GAAGA	2 cut(s)	142, 164
MhlI	GDGCHC	2 cut(s)	463, 596
MluCI	AATT	4 cut(s)	355, 483, 657, 701
MmeI	TCCRAC	2 cut(s)	365, 460
MnlI	CCTC	1 cut(s)	142
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	656, 686
MslI	CAYNNNNRTG	1 cut(s)	577
MspA1I	CMGCKG	2 cut(s)	41, 377
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	644
NdeI	CATATG	2 cut(s)	234, 253
NdeII	GATC	4 cut(s)	49, 82, 396, 718
NlaIII	CATG	4 cut(s)	231, 467, 514, 533
NlaIV	GGNNCC	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	332
PciI	ACATGT	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	494
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	419, 646
PscI	ACATGT	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	408
PvuII	CAGCTG	2 cut(s)	41, 377
RseI	CAYNNNNRTG	1 cut(s)	577
SacI	GAGCTC	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	656, 686
SatI	GCNGC	2 cut(s)	418, 645
Sau3AI	GATC	4 cut(s)	49, 82, 396, 718
Sau96I	GGNCC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	463, 596
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	577
Sse9I	AATT	4 cut(s)	355, 483, 657, 701
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	3 cut(s)	394, 644, 664
SspMI	CTAG	2 cut(s)	368, 576
SstI	GAGCTC	1 cut(s)	596
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	3 cut(s)	112, 565, 735
TasI	AATT	4 cut(s)	355, 483, 657, 701
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	2 cut(s)	656, 686
Tru9I	TTAA	2 cut(s)	656, 686
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	1 cut(s)	417
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	2 cut(s)	355, 701
XbaI	TCTAGA	1 cut(s)	575
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	2 cut(s)	368, 576
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.