Rroxscaffold_5G00342260

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001399
Physical Location & Seq
Reverse (-)
11052667 .. 11053280
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342260.1

Sequence Viewer

Length: 483 bp
ATGTTTTCGGGAGCTTCAAAGGTAGATTCCTATGTAAGTGGAAAGCGAGTTGTGAGTGTTAAGTTGCCATCTGTCTCTTTGACAAAATGTTCTGAAGCTGAGGATTCTGATGAGCCTGTCGGAAACTCTGCACAACTTAAAGGTGCTTCTGCTCTTCCAACTCTTGTACAGAAAATTCCAGATCTTGTTGCTCTCTCATCATATCCTAAAAGCCAGTGGCAAAGTTTAATCAACTTAGACGTTATAAAGGGACGAAATAAACCGATTGAGCCCCCAAAGAAACCCGCAAAGGCTCCTTTCTTTTTGCCTTCAGTTCCATCTCTTTCAGGGGAAATAATGATTAAGCCTACTGGGTCAACAAATGAGGAGGCAAAAGGTGGTGAAGAATCATCTAGAATAAAGACTGCTCTGGCACCATCAATATTCCTTCAAGCGCTTCAGTCATCTGCAGAAATGAAGAATTATAAATATGTTATCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

160

Amino Acids

17.13

Weight (kDa)

9.28

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp21 PF04192 61 - 158 5.9e-26 Utp21 specific WD40 associated putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 245, 465
AccB1I GGYRCC 1 cut(s) 412
AciI CCGC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 3 cut(s) 114, 294, 422
AfaI GTAC 1 cut(s) 168
AfeI AGCGCT 1 cut(s) 435
AgsI TTSAA 2 cut(s) 18, 431
AluBI AGCT 2 cut(s) 14, 98
AluI AGCT 2 cut(s) 14, 98
Alw26I GTCTC 1 cut(s) 79
Aor51HI AGCGCT 1 cut(s) 435
ApoI RAATTY 1 cut(s) 174
AspLEI GCGC 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 392
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 99
BccI CCATC 3 cut(s) 76, 325, 424
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 437
BglII AGATCT 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 294, 414
BmrI ACTGGG 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 214, 355
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 214, 355
BseRI GAGGAG 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 412
BslFI GGGAC 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 294, 414
BspMAI CTGCAG 1 cut(s) 451
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 412
BsrGI TGTACA 1 cut(s) 166
BsrI ACTGG 2 cut(s) 214, 355
BssMI GATC 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 99, 235
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 221
CfoI GCGC 1 cut(s) 436
Csp6I GTAC 1 cut(s) 167
CviJI RGCY 7 cut(s) 14, 98, 115, 213, 271, 293, 346
CviKI_1 RGCY 7 cut(s) 14, 98, 115, 213, 271, 293, 346
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 2 cut(s) 99, 235
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 273
Eco47III AGCGCT 1 cut(s) 435
Eco57I CTGAAG 3 cut(s) 114, 294, 422
EcoT38I GRGCYC 1 cut(s) 273
FaiI YATR 5 cut(s) 33, 202, 245, 465, 471
FaqI GGGAC 1 cut(s) 264
FauI CCCGC 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 273
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 437
HhaI GCGC 1 cut(s) 436
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 3 cut(s) 26, 104, 386
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 357
Hpy188I TCNGA 3 cut(s) 94, 109, 122
Hpy188III TCNNGA 3 cut(s) 9, 179, 393
Hpy8I GTNNAC 1 cut(s) 357
HpyAV CCTTC 2 cut(s) 318, 437
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 131, 449
HpyF3I CTNAG 2 cut(s) 99, 235
HpySE526I ACGT 1 cut(s) 240
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 11, 298
LpnPI CCDG 6 cut(s) 129, 192, 227, 312, 336, 395
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 3 cut(s) 146, 395, 469
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 174, 460
MmeI TCCRAC 2 cut(s) 100, 182
MnlI CCTC 3 cut(s) 94, 358, 361
MseI TTAA 4 cut(s) 60, 138, 227, 342
NdeII GATC 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 294, 414
PciSI GCTCTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 26, 104, 386
PsiI TTATAA 2 cut(s) 245, 465
PspN4I GGNNCC 2 cut(s) 294, 414
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 4 cut(s) 60, 138, 227, 342
Sau3AI GATC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 273
SetI ASST 6 cut(s) 16, 24, 100, 145, 243, 379
SfcI CTRYAG 1 cut(s) 447
Sse9I AATT 2 cut(s) 174, 460
SsiI CCGC 1 cut(s) 285
SspI AATATT 1 cut(s) 423
SspMI CTAG 1 cut(s) 393
TaiI ACGT 1 cut(s) 243
TasI AATT 2 cut(s) 174, 460
TatI WGTACW 1 cut(s) 166
TfiI GAWTC 3 cut(s) 26, 104, 386
Tru1I TTAA 4 cut(s) 60, 138, 227, 342
Tru9I TTAA 4 cut(s) 60, 138, 227, 342
TscAI CASTG 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 470
TspRI CASTG 1 cut(s) 221
XapI RAATTY 1 cut(s) 174
XbaI TCTAGA 1 cut(s) 392
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.