Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

13770931 .. 13772006

Gene Structure 1076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTCTCTAGGCTGTTGTTGGCTAATGACTTAATTATCCGCTTGTTTGACGTTGTGGCATCAAGAATGGTTCGTAAATTTGAAGACCATACTGATCGTGTTACAGACATGTGTTTTAGTGAGGATGGAAAATGGCTTTTGTCTTCCAGTGTGGATGGAAGTCTTCGAGTTTGGCATGTTATCGTAGCAAGACAAATCGATGCATTGCATGTTGATGTGTCTGTGACGGCACTGTCTCTATCACCGAATATGGATATTTTAGCGACCTCCCATGTTGATCAAAATGGGGTCTATCTTTGGGTGAATCAATCAATGTTTTTCGGGAGCTTCAAAGGTAGATTCCTATGCAAGTGGAAAGCGAGTTGTGAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

124

Amino Acids

14.1

Weight (kDa)

6.39

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	8 - 106	4.4e-34	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	8 - 89	1e-11	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	8 - 61	3.7e-08	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	9 - 95	8.2e-13	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	9 - 105	4.8e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR75_1st	PF23869	9 - 83	9.1e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_WDR5	PF25175	10 - 111	5.8e-15	WDR5 beta-propeller domain
WD40_Prp19	PF24814	10 - 65	1.5e-08	Prp19 WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	12 - 92	3.1e-08	WDR90/POC16, second beta-propeller
WDR55	PF24796	12 - 60	3.4e-06	WDR55
Beta-prop_WDR3_2nd	PF25172	13 - 112	6.2e-06	WDR3 second beta-propeller domain
WD40	PF00400	23 - 58	5.9e-11	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	24 - 95	1.7e-07	CAF1B/HIR1 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	232
AciI	CCGC	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	83, 331
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	10, 240
ApoI	RAATTY	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	234, 313
BbsI	GAAGAC	3 cut(s)	90, 135, 155
BccI	CCATC	2 cut(s)	119, 149
BceAI	ACGGC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	10, 240
BfaI	CTAG	1 cut(s)	9
BmsI	GCATC	2 cut(s)	68, 190
BpiI	GAAGAC	3 cut(s)	90, 135, 155
Bsa29I	ATCGAT	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	203
BseCI	ATCGAT	1 cut(s)	198
BseGI	GGATG	2 cut(s)	130, 160
BseMI	GCAATG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	147
BshVI	ATCGAT	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	10, 240
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	94, 277
BspACI	CCGC	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	94, 277
Bst4CI	ACNGT	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	130, 160
BstKTI	GATC	2 cut(s)	97, 280
BstMAI	GTCTC	2 cut(s)	10, 240
BstMBI	GATC	2 cut(s)	94, 277
BstNSI	RCATGY	3 cut(s)	112, 179, 212
BstV2I	GAAGAC	3 cut(s)	90, 135, 155
Bsu15I	ATCGAT	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	130, 160
BtsIMutI	CAGTG	2 cut(s)	154, 230
ClaI	ATCGAT	1 cut(s)	198
CviAII	CATG	4 cut(s)	109, 176, 209, 272
CviJI	RGCY	4 cut(s)	13, 23, 136, 327
CviKI_1	RGCY	4 cut(s)	13, 23, 136, 327
DpnI	GATC	2 cut(s)	96, 279
DpnII	GATC	2 cut(s)	94, 277
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	205
FaeI	CATG	4 cut(s)	112, 179, 212, 275
FaiI	YATR	7 cut(s)	90, 110, 177, 210, 251, 273, 346
FatI	CATG	4 cut(s)	108, 175, 208, 271
FbaI	TGATCA	1 cut(s)	277
FokI	GGATG	2 cut(s)	137, 167
FspBI	CTAG	1 cut(s)	9
Hin1II	CATG	4 cut(s)	112, 179, 212, 275
HinfI	GANTC	2 cut(s)	304, 339
HphI	GGTGA	2 cut(s)	234, 313
Hpy188III	TCNNGA	2 cut(s)	63, 322
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	3 cut(s)	203, 208, 348
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	112, 179, 212, 275
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	94, 277
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	1 cut(s)	160
LweI	GCATC	2 cut(s)	68, 190
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	100, 223
MalI	GATC	2 cut(s)	96, 279
MboI	GATC	2 cut(s)	94, 277
MboII	GAAGA	3 cut(s)	95, 135, 155
MluCI	AATT	2 cut(s)	33, 77
MnlI	CCTC	2 cut(s)	115, 277
Mph1103I	ATGCAT	1 cut(s)	205
MseI	TTAA	2 cut(s)	32, 373
MslI	CAYNNNNRTG	1 cut(s)	213
NdeII	GATC	2 cut(s)	94, 277
NlaIII	CATG	4 cut(s)	112, 179, 212, 275
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	3 cut(s)	112, 179, 212
PciI	ACATGT	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	304, 339
PscI	ACATGT	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	32, 373
Sau3AI	GATC	2 cut(s)	94, 277
SetI	ASST	4 cut(s)	54, 269, 329, 337
SfaNI	GCATC	2 cut(s)	68, 190
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	2 cut(s)	33, 77
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	166, 198
TasI	AATT	2 cut(s)	33, 77
TfiI	GAWTC	2 cut(s)	304, 339
Tru1I	TTAA	2 cut(s)	32, 373
Tru9I	TTAA	2 cut(s)	32, 373
TscAI	CASTG	2 cut(s)	154, 237
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspRI	CASTG	2 cut(s)	154, 237
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	3 cut(s)	112, 179, 212
XspI	CTAG	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.