FvH4_4g05841

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001399
Physical Location & Seq
Forward (+)
5213817 .. 5218095
4279 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05841.t1

Sequence Viewer

Length: 771 bp
ATGGTTACCCAGAAGCCCAAAATACCAGATGGAGACATGATCACAATTCAAGATTTGCTGAGGCTTGTCTCCATGGATTTAGAGGTTCAGTCCCGTCGAAGTGGTGGATATGGTGGCAGAAGCAATGGTTACGGAGGAGGGAGTGGTGGCTATGGAGGTGTTGCCCGTCGTGAAGGTAGAAAGTCGGTGGTGATGGTGGTGGCTATGGAGGTGGTGGCCGAGACCCTGGAGGTGGTGGATATGTTGTGGCTGCGCGACTGGTTGGTTATGGTGGATCATGAAAGGAGAGAGCTTTCTCAAAGTCATATGACTAAACGAGCGAAGAAACTGAGGGTGAAGGAGGAAGAGATAAAACTGAAACCTGTCATTGCTTTTGATTGTGGGACAGCTGGTGGTTGGATTCGGCGGTTCAATCTGCAGTCAGGAAGCAGCCGAGGTAGTTATGTGGATCCATCGGAAAGAAGCGGCTCTGCCCATGACGGGGAAGTTGTTGGAATTGCGTATGATTCAACTAATACTCACATGATAAGCGCTGGATATCAGGGAGACATAAAGGTCTGGGATTTCAAGGGACGTGCAGTACCATCTATATGGGAAGTTGGGAGCGCTGTTGTCAGGATTGTATACAATCGTTTGAATGGTCTTTTGGCTATTGCCGCTGATGACTTAATTATCCACTTGTTTGATATTGTTCGAGATGAGCTAACTATAGCTTGGGATGACGAGCTTGATTCTTTTGTAGCACATATATATGAGAGATTTCGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

257

Amino Acids

28.6

Weight (kDa)

6.33

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 125 - 230 7.6e-06 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 128 - 231 2.3e-22 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 624
AccII CGCG 1 cut(s) 255
AciI CCGC 3 cut(s) 406, 465, 657
AclWI GGATC 3 cut(s) 282, 443, 456
AcoI YGGCCR 1 cut(s) 216
AfaI GTAC 1 cut(s) 582
AfeI AGCGCT 2 cut(s) 532, 607
AfiI CCNNNNNNNGG 3 cut(s) 232, 480, 481
AgsI TTSAA 5 cut(s) 50, 412, 510, 568, 637
AjiI CACGTC 1 cut(s) 575
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AluBI AGCT 5 cut(s) 292, 389, 703, 713, 727
AluI AGCT 5 cut(s) 292, 389, 703, 713, 727
Alw26I GTCTC 4 cut(s) 27, 73, 215, 540
AlwI GGATC 3 cut(s) 282, 443, 456
Aor51HI AGCGCT 2 cut(s) 532, 607
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 250, 429
AspLEI GCGC 3 cut(s) 255, 533, 608
AsuHPI GGTGA 2 cut(s) 202, 346
AsuII TTCGAA 1 cut(s) 763
BamHI GGATCC 1 cut(s) 448
BbvCI CCTCAGC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 237, 441
BccI CCATC 4 cut(s) 23, 187, 460, 592
BciT130I CCWGG 1 cut(s) 227
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 4 cut(s) 27, 73, 215, 540
BfmI CTRYAG 2 cut(s) 416, 708
BfoI RGCGCY 2 cut(s) 534, 609
BisI GCNGC 4 cut(s) 251, 430, 466, 657
BlsI GCNGC 4 cut(s) 252, 431, 467, 658
Bme1390I CCNGG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 763
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 72, 225, 433
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 480, 481
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 2 cut(s) 130, 366
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 72, 225, 433
BseGI GGATG 1 cut(s) 724
BseLI CCNNNNNNNGG 3 cut(s) 232, 480, 481
BseMI GCAATG 2 cut(s) 130, 366
BseMII CTCAG 2 cut(s) 50, 320
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 237, 441
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 218
BslFI GGGAC 3 cut(s) 76, 397, 585
BslI CCNNNNNNNGG 3 cut(s) 232, 480, 481
BsmAI GTCTC 4 cut(s) 27, 73, 215, 540
BsmFI GGGAC 3 cut(s) 76, 397, 585
BsnI GGCC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 763
Bsp143I GATC 3 cut(s) 39, 274, 448
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 3 cut(s) 406, 465, 657
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 51, 321
BspFNI CGCG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 450
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 3 cut(s) 282, 443, 456
BspT104I TTCGAA 1 cut(s) 763
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 130, 366
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 72, 225, 433
BssMI GATC 3 cut(s) 39, 274, 448
BssNAI GTATAC 1 cut(s) 625
BssT1I CCWWGG 1 cut(s) 72
Bst1107I GTATAC 1 cut(s) 625
Bst2UI CCWGG 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 763
BstDEI CTNAG 2 cut(s) 59, 329
BstDSI CCRYGG 1 cut(s) 72
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 724
BstFNI CGCG 1 cut(s) 255
BstH2I RGCGCY 2 cut(s) 534, 609
BstHHI GCGC 3 cut(s) 255, 533, 608
BstKTI GATC 3 cut(s) 42, 277, 451
BstMAI GTCTC 4 cut(s) 27, 73, 215, 540
BstMBI GATC 3 cut(s) 39, 274, 448
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 1 cut(s) 227
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 2 cut(s) 416, 708
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 237, 441
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 625
BsuRI GGCC 1 cut(s) 218
BtgI CCRYGG 1 cut(s) 72
BtrI CACGTC 1 cut(s) 575
BtsCI GGATG 1 cut(s) 724
CciI TCATGA 1 cut(s) 277
CfoI GCGC 3 cut(s) 255, 533, 608
Csp6I GTAC 1 cut(s) 581
CviAII CATG 5 cut(s) 37, 73, 278, 476, 523
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 2 cut(s) 59, 329
DpnI GATC 3 cut(s) 41, 276, 450
DpnII GATC 3 cut(s) 39, 274, 448
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 539
Eco47III AGCGCT 2 cut(s) 532, 607
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 225
EcoRV GATATC 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 5 cut(s) 40, 76, 281, 479, 526
FaqI GGGAC 3 cut(s) 76, 397, 585
FatI CATG 5 cut(s) 36, 72, 277, 475, 522
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 4 cut(s) 251, 430, 466, 657
FokI GGATG 1 cut(s) 731
Fsp4HI GCNGC 4 cut(s) 251, 430, 466, 657
GlaI GCGC 3 cut(s) 254, 532, 607
GluI GCNGC 4 cut(s) 251, 430, 466, 657
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 2 cut(s) 534, 609
HaeIII GGCC 1 cut(s) 218
HhaI GCGC 3 cut(s) 255, 533, 608
Hin1II CATG 5 cut(s) 40, 76, 281, 479, 526
Hin6I GCGC 3 cut(s) 253, 531, 606
HinP1I GCGC 3 cut(s) 253, 531, 606
HinfI GANTC 3 cut(s) 400, 506, 731
HphI GGTGA 2 cut(s) 202, 346
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 6 cut(s) 50, 170, 278, 423, 616, 695
Hpy8I GTNNAC 1 cut(s) 625
Hpy99I CGWCG 2 cut(s) 99, 171
HpyAV CCTTC 2 cut(s) 167, 331
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 2 cut(s) 418, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 2 cut(s) 59, 329
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 5 cut(s) 40, 76, 281, 479, 526
HspAI GCGC 3 cut(s) 253, 531, 606
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 3 cut(s) 39, 274, 448
LmnI GCTCC 1 cut(s) 603
Lsp1109I GCAGC 2 cut(s) 237, 441
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 2 cut(s) 4, 128
MalI GATC 3 cut(s) 41, 276, 450
MboI GATC 3 cut(s) 39, 274, 448
MboII GAAGA 2 cut(s) 334, 356
MflI RGATCY 1 cut(s) 448
MluCI AATT 3 cut(s) 45, 495, 669
MmeI TCCRAC 2 cut(s) 377, 472
MseI TTAA 1 cut(s) 668
MslI CAYNNNNRTG 2 cut(s) 589, 750
MspA1I CMGCKG 2 cut(s) 389, 659
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 656
NcoI CCATGG 1 cut(s) 72
NdeI CATATG 1 cut(s) 306
NdeII GATC 3 cut(s) 39, 274, 448
NlaIII CATG 5 cut(s) 40, 76, 281, 479, 526
NlaIV GGNNCC 1 cut(s) 450
NmeAIII GCCGAG 2 cut(s) 244, 458
NspV TTCGAA 1 cut(s) 763
PagI TCATGA 1 cut(s) 277
PfeI GAWTC 3 cut(s) 400, 506, 731
PkrI GCNGC 4 cut(s) 252, 431, 467, 658
Psp6I CCWGG 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 450
PstI CTGCAG 1 cut(s) 420
PsuI RGATCY 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 2 cut(s) 589, 750
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 4 cut(s) 251, 430, 466, 657
Sau3AI GATC 3 cut(s) 39, 274, 448
ScrFI CCNGG 1 cut(s) 227
SfcI CTRYAG 2 cut(s) 416, 708
SfuI TTCGAA 1 cut(s) 763
SmiMI CAYNNNNRTG 2 cut(s) 589, 750
Sse9I AATT 3 cut(s) 45, 495, 669
SsiI CCGC 3 cut(s) 406, 465, 657
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 72
TaiI ACGT 1 cut(s) 577
TaqI TCGA 3 cut(s) 97, 694, 763
TasI AATT 3 cut(s) 45, 495, 669
TauI GCSGC 2 cut(s) 468, 659
TfiI GAWTC 3 cut(s) 400, 506, 731
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TseI GCWGC 2 cut(s) 250, 429
TspDTI ATGAA 1 cut(s) 294
TspGWI ACGGA 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.