RLG00000002471

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001399
Physical Location & Seq
Reverse (-)
34726795 .. 34743696
16902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002471

Sequence Viewer

Length: 963 bp
ATGGAGAAGGTCCACAATTGCCTAAGAAGATTCGAGCTCTTGCTTCGTATCGGCTACACATTCGCTGCGTATGGGACTGATATTGCTGTTTTTAAGCGATCTCATCAGGTTGCTACTTGGAGCACCCATAATGCGAAGGTCAATTTGTTGCTATTGTTTGGAGATCATATTCTAAGTGTTGATGTTGAAAGTAATCTGTATATATGGACATTTAAAGGATTGGATGAATATTTTACTCCTACCTGTATTATGCATCCGGATACCTACTTGCATAAGGTAAACTTCTTTTCTCTCTTAGAGAAGTTTTTTATTATTGGGAGTCAAGAAGGTTCTCTTCAGCTTTGGAATATCAGCCCAAAGAAAAAACTGTATGAGTTCAAGGGATGGAAATCTTCTATATGCAGCTGTGTTTCGTCTCCTGCGCTAGATGTTGTTGCAGTTGGTTGTGCTGATGGAAAAATTCATGTTCACAACATACGATTTGAAGAAGAGTTAGTGACGTTTACTCATTCAACACGAGGTGCTGTGACTGCCTTATCTTTCAGCACAGATTGGCAGCCTCTTCTAGCATCTCGAGGTTCTTCTGGTGTTATAAACATATGGAATCTCGAAAAAAGAAGGCCTCAATCAGTTATAAAAGAGGCCCACAATGGTTCTATACTTTCACTGCACTTCTTTGTGAGTGAGCCAGTGTTAACGAGTTCATCATCAGACAATTCTATTAAAATCGATGCTCGTGTTTTACGGTTTAGAAGTGGTCATAGTGCTCCTCCACAATGCATAAGGTTTTATGCAAATGGGAGACATATTCTTTCGGCTGGTCAGGATCGTGCCTTTCTCCTTTTCTCTATAATCCAGGATCAACAAAGTCGAGAGCTTTCTCAACGTCATATAACAAAACGAGCGAAGAAACTCAGGGTGAAGATTTTACTAAAATTCAACGCAAAAAGCCACACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

321

Amino Acids

36.39

Weight (kDa)

9.56

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_1st PF25171 18 - 243 3.9e-65 WDR36/Utp21 first beta-propeller
WD40_Prp19 PF24814 32 - 276 1.1e-14 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 37 - 207 1.8e-10 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 52 - 241 4.1e-17 CDC20/Fizzy WD40 domain
Beta-prop_RIG_2nd PF23775 91 - 220 9.2e-08 RIG second beta-propeller
Beta-prop_HPS5 PF23756 92 - 216 2.1e-07 HPS5 beta-propeller
WDR90_beta-prop_4th PF23342 96 - 213 1.4e-06 WDR90, 4th beta-propeller
Beta-prop_WDR5 PF25175 99 - 207 3.3e-10 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 99 - 208 3.4e-06 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 101 - 241 2.8e-11 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 101 - 202 2.6e-06 G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd PF25047 101 - 171 4.3e-06 TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 102 - 300 5.1e-09 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st PF25173 103 - 243 3.2e-18 WDR3 first beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 107 - 208 3.6e-10 WDR90/POC16, second beta-propeller
Beta-prop_EML PF23409 107 - 241 4.3e-10 Echinoderm microtubule-associated protein first beta-propeller
WDR55 PF24796 132 - 243 1.1e-06 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 260 - 305 1.3e-07 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 593, 635
AccIII TCCGGA 1 cut(s) 256
AclWI GGATC 2 cut(s) 834, 867
AcsI RAATTY 2 cut(s) 459, 935
AcuI CTGAAG 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 521
AgsI TTSAA 5 cut(s) 188, 379, 485, 513, 940
AjnI CCWGG 1 cut(s) 855
AluBI AGCT 4 cut(s) 37, 340, 405, 877
AluI AGCT 4 cut(s) 37, 340, 405, 877
Alw21I GWGCWC 3 cut(s) 39, 125, 769
Alw26I GTCTC 2 cut(s) 420, 796
AlwI GGATC 2 cut(s) 834, 867
Ama87I CYCGRG 1 cut(s) 573
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 2 cut(s) 620, 642
ApeKI GCWGC 3 cut(s) 65, 402, 556
ApoI RAATTY 2 cut(s) 459, 935
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 2 cut(s) 10, 643
AsuHPI GGTGA 1 cut(s) 931
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 39
BauI CACGAG 2 cut(s) 516, 735
Bbv12I GWGCWC 3 cut(s) 39, 125, 769
BbvI GCAGC 3 cut(s) 52, 414, 568
BccI CCATC 2 cut(s) 378, 446
BciT130I CCWGG 1 cut(s) 857
BciVI GTATCC 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 420, 796
BfaI CTAG 2 cut(s) 425, 566
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 3 cut(s) 66, 403, 557
BlsI GCNGC 3 cut(s) 67, 404, 558
Bme1390I CCNGG 1 cut(s) 857
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 10, 643
BmrFI CCNGG 1 cut(s) 857
BmsI GCATC 3 cut(s) 262, 578, 721
Bsa29I ATCGAT 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 689
Bse8I GATNNNNATC 1 cut(s) 388
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 857
BseCI ATCGAT 1 cut(s) 729
BseGI GGATG 3 cut(s) 229, 253, 389
BseJI GATNNNNATC 1 cut(s) 388
BseMII CTCAG 1 cut(s) 928
BseNI ACTGG 1 cut(s) 689
BseRI GAGGAG 1 cut(s) 759
BseXI GCAGC 3 cut(s) 52, 414, 568
BsgI GTGCAG 1 cut(s) 653
BshFI GGCC 2 cut(s) 622, 644
BshVI ATCGAT 1 cut(s) 729
BsiHKAI GWGCWC 3 cut(s) 39, 125, 769
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 420, 796
BsmBI CGTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 2 cut(s) 622, 644
BsoBI CYCGRG 1 cut(s) 573
Bsp1286I GDGCHC 3 cut(s) 39, 125, 769
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 4 cut(s) 98, 163, 826, 859
BspANI GGCC 2 cut(s) 622, 644
BspCNI CTCAG 1 cut(s) 927
BspDI ATCGAT 1 cut(s) 729
BspEI TCCGGA 1 cut(s) 256
BspPI GGATC 2 cut(s) 834, 867
BsrI ACTGG 1 cut(s) 689
BssMI GATC 4 cut(s) 98, 163, 826, 859
BssSI CACGAG 2 cut(s) 516, 735
Bst2BI CACGAG 2 cut(s) 516, 735
Bst2UI CCWGG 1 cut(s) 857
Bst4CI ACNGT 2 cut(s) 369, 747
Bst6I CTCTTC 3 cut(s) 339, 483, 567
BstDEI CTNAG 4 cut(s) 23, 173, 295, 914
BstF5I GGATG 3 cut(s) 229, 253, 389
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 4 cut(s) 101, 166, 829, 862
BstMAI GTCTC 2 cut(s) 420, 796
BstMBI GATC 4 cut(s) 98, 163, 826, 859
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 1 cut(s) 857
BstSCI CCNGG 1 cut(s) 855
BstV1I GCAGC 3 cut(s) 52, 414, 568
Bsu15I ATCGAT 1 cut(s) 729
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 622, 644
BsuTUI ATCGAT 1 cut(s) 729
BtsCI GGATG 3 cut(s) 229, 253, 389
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 2 cut(s) 665, 696
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 10, 643
ClaI ATCGAT 1 cut(s) 729
CviAII CATG 1 cut(s) 464
DdeI CTNAG 4 cut(s) 23, 173, 295, 914
DpnI GATC 4 cut(s) 100, 165, 828, 861
DpnII GATC 4 cut(s) 98, 163, 826, 859
DraI TTTAAA 1 cut(s) 214
DraIII CACNNNGTG 1 cut(s) 521
Eam1104I CTCTTC 3 cut(s) 339, 483, 567
EarI CTCTTC 3 cut(s) 339, 483, 567
Ecl136II GAGCTC 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 622
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 573
EcoICRI GAGCTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 855
EcoT22I ATGCAT 2 cut(s) 255, 782
EcoT38I GRGCYC 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 1 cut(s) 467
FalI AAGNNNNNCTT 5 cut(s) 266, 298, 318, 350, 940
FaqI GGGAC 1 cut(s) 88
FatI CATG 1 cut(s) 463
FauNDI CATATG 1 cut(s) 599
Fnu4HI GCNGC 3 cut(s) 66, 403, 557
FokI GGATG 3 cut(s) 236, 240, 396
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 66, 403, 557
FspBI CTAG 2 cut(s) 425, 566
GlaI GCGC 1 cut(s) 423
GluI GCNGC 3 cut(s) 66, 403, 557
HaeIII GGCC 2 cut(s) 622, 644
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 424
Hin1II CATG 1 cut(s) 467
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HinfI GANTC 3 cut(s) 30, 319, 604
HpaI GTTAAC 1 cut(s) 696
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 931
Hpy166II GTNNAC 5 cut(s) 13, 280, 469, 504, 696
Hpy188I TCNGA 1 cut(s) 712
Hpy188III TCNNGA 6 cut(s) 257, 323, 573, 608, 824, 872
Hpy8I GTNNAC 5 cut(s) 13, 280, 469, 504, 696
HpyAV CCTTC 3 cut(s) 130, 320, 612
HpyCH4III ACNGT 2 cut(s) 369, 747
HpyCH4IV ACGT 2 cut(s) 500, 886
HpyCH4V TGCA 7 cut(s) 253, 271, 402, 437, 670, 780, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 4 cut(s) 23, 173, 295, 914
HpySE526I ACGT 2 cut(s) 500, 886
Hsp92II CATG 1 cut(s) 467
HspAI GCGC 1 cut(s) 422
Kpn2I TCCGGA 1 cut(s) 256
KspAI GTTAAC 1 cut(s) 696
Kzo9I GATC 4 cut(s) 98, 163, 826, 859
LmnI GCTCC 2 cut(s) 120, 772
Lsp1109I GCAGC 3 cut(s) 52, 414, 568
LweI GCATC 3 cut(s) 262, 578, 721
MaeI CTAG 2 cut(s) 425, 566
MaeII ACGT 2 cut(s) 500, 886
MaeIII GTNAC 2 cut(s) 496, 526
MalI GATC 4 cut(s) 100, 165, 828, 861
MboI GATC 4 cut(s) 98, 163, 826, 859
MboII GAAGA 9 cut(s) 39, 326, 384, 497, 500, 554, 573, 919, 934
MfeI CAATTG 1 cut(s) 16
MhlI GDGCHC 3 cut(s) 39, 125, 769
MluCI AATT 5 cut(s) 16, 142, 459, 715, 935
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 6 cut(s) 512, 569, 570, 633, 634, 780
Mph1103I ATGCAT 2 cut(s) 255, 782
MroI TCCGGA 1 cut(s) 256
MseI TTAA 4 cut(s) 93, 213, 695, 723
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 857
MunI CAATTG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 857
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeI CATATG 1 cut(s) 599
NdeII GATC 4 cut(s) 98, 163, 826, 859
NlaIII CATG 1 cut(s) 467
NmuCI GTSAC 2 cut(s) 496, 526
NsiI ATGCAT 2 cut(s) 255, 782
PaeR7I CTCGAG 1 cut(s) 573
PceI AGGCCT 1 cut(s) 622
PfeI GAWTC 2 cut(s) 30, 604
PfoI TCCNGGA 1 cut(s) 855
PkrI GCNGC 3 cut(s) 67, 404, 558
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PsiI TTATAA 2 cut(s) 593, 635
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 855
PspGI CCWGG 1 cut(s) 855
PspPI GGNCC 2 cut(s) 10, 643
PvuII CAGCTG 1 cut(s) 405
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 4 cut(s) 93, 213, 695, 723
SatI GCNGC 3 cut(s) 66, 403, 557
Sau3AI GATC 4 cut(s) 98, 163, 826, 859
Sau96I GGNCC 2 cut(s) 10, 643
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 857
SduI GDGCHC 3 cut(s) 39, 125, 769
SfaNI GCATC 3 cut(s) 262, 578, 721
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 5 cut(s) 16, 142, 459, 715, 935
SseBI AGGCCT 1 cut(s) 622
SspI AATATT 1 cut(s) 230
SspMI CTAG 2 cut(s) 425, 566
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 622
StyD4I CCNGG 1 cut(s) 855
TaaI ACNGT 2 cut(s) 369, 747
TaiI ACGT 2 cut(s) 503, 889
TaqI TCGA 5 cut(s) 33, 574, 609, 729, 871
TasI AATT 5 cut(s) 16, 142, 459, 715, 935
TfiI GAWTC 2 cut(s) 30, 604
Tru1I TTAA 4 cut(s) 93, 213, 695, 723
Tru9I TTAA 4 cut(s) 93, 213, 695, 723
TscAI CASTG 2 cut(s) 672, 696
TseFI GTSAC 2 cut(s) 496, 526
TseI GCWGC 3 cut(s) 65, 402, 556
Tsp45I GTSAC 2 cut(s) 496, 526
TspDTI ATGAA 3 cut(s) 240, 452, 693
TspRI CASTG 2 cut(s) 672, 696
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 2 cut(s) 459, 935
XhoI CTCGAG 1 cut(s) 573
XspI CTAG 2 cut(s) 425, 566
Zsp2I ATGCAT 2 cut(s) 255, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.