Rh4CG083800

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001399
Physical Location & Seq
Reverse (-)
14936770 .. 15151196
214427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG083800.1

Sequence Viewer

Length: 2700 bp
ATGGGAATCTTCGAAGCAATCGGCTACACCACCACCTCCGTCCCCTTCTCCGTTCAGCGCCTCGGCACCGAAGCCTTCGTCACCGTCAGCGTCGGCAAAGCCTTCCAAATTTACAATTGCGCAAAGCTCACTCTGGTCCTCGTCGGTCCGCAATTGCCGAAGAAGATTCGAGCTCTTGCTTCGTATCGGGACTACACATTCGCTGCATATGGGACTGATATAGCTGTTTTTAAGCGATCTCATCAGGTTGCTATGTGGAGTGCCCATAATGCGAAGGTCAATTTGTTGCTATTGTTTGGAGAGCATATCCTAAGTGTTGATGTTGAAGGTAATCTGTATATATGGACATTTAAAGGAATTGATGAGAATCATGATCCGGTTGGACATATTAAGTTGGACGTAAATTTTACTCCTAGCTGTATAATGCATCCGGATACCTACTTAAATAAGGTTATCATTGGGAGTCAAGAAGGTTCTCTGCAGCTTTGGAATATCAGCACAAAGAAAAAACTGTATGAGTTCAAGGGATGGAAATCTTCTATATGCAGCTGTGTTTCGTCTCCTGCGCTAGATGTTGTTGCAGTTGGTTGTGCTGATGGAAAAATTCATGTTCACAACATACGATTTGATGAAGAGTTGGTGACGTTTTCCCATTCAACACGAGGTGCTGTGACTGCCTTATCTTTCAGCACAGATGGGCAGCCTCTTCTAGCATCTGGAGGTTCTTCTGGTGTTATAAGCATATGGAATCTCGAAAAAAGAAGGCTTCAATCAGTTATAAAAGAGGCACATGATGGTTCTATACTTTCACTGCACTTTTTTGTGAATGAACCAGTGTTAATGAGTTCATCATCAGACAATTCTATTAAAATGTGGATTTTTGACACAAGCGATGGAGATGCTCGTCTTTTACGGTTTAGAAGTGGTCATAGTGCTCCTCCACAATGCATAAGGTTTTATGCAAATGGGAGACATATTCTATCGGCTGGTCAGGATCGTGCCTTTCGCCTTTTCTCTATAATCCAGGATCAACAAAGTAGAGAGCTTTCTCAACGTCATATAACAAAACGAGCAAAGAAACTCAGGGTGAAGGAGGAAGAGATAAAACTGAAACCTGTCATTGCTTTTGATTGTGCTGAAATAAGAGAGCGAGATTGGTGCAATGTTGTTACATGTCATATGGATACTGCACAGGCATATGTCTGGAGACTTCAAAACTTTGTTCTTGGGGAGCATATTCTGAAACCAAGACCAGAAAACCCAACACCTGTGAAGGCCTGTGCTATCAGTGCATGTGGAAATTTTGCCATACTAGGGACCGCTGGTGGTTGGATTGAGCGGTTCAACCTGCAGTCAGGAAGCAGCCGAGGTAATTATGTGGATCCATCGGAAAGAAGCATCTGTGCCCATGACGGGGAAGTTGTTGGAATTGCTTGTGATTCAACTAATACTCACATGATAAGTGCTGGATATCACGGAGACATAAAGGTCTGGGATTTCAAGGGACGTGGAGTGCCATCTAGATGGGAAGTTGGGAGCTCTGTTGTCAGGATTGTATTCAATCGCTTGAATGGTCTTTTGGCTGTTGTGGCTGATGACTTAATTATCCGCTTGTTTGATGTTGTGGCATCAAGAATGGTTCGTAAATTTGAAGGCCATACTGATCGTGTTACAGACATGTGTTTTAGTGAGGATGGAAAATGGCTTTTGTCTTCCAGTATGGATGGAAGTCTTCGAGTTTGGGATGTTATCTTAGCAAGACAAATAGATGCGTTGCATGTTGATGTGTCTGTGACTGCATTGTCTCTATCACCGAATATGGATATTTTAGCGACCTCCCATGTTGATCAAAATGGGGTCTATCTTTGGGTGAATCAATCAATGTTTTCGGGAGTTTCAAAGGTAGATTCCTATGCAAGTGGAAAGCGAGTTGTGAGTGTTAAGTTGCCATCTGTCTCTTCGACAAAAGGTTCTGAAGCTGAGGATTCTGATGAGCCTGTTGGAAACTCTGAACAACTGAAAGATGCTTCTGCTCTTCCAAGTCCTGTACAGCAAATTCCAGATCTTGTTACTCTCTCATCATATCCTAAAAGCCAGTGGCAAAGCTTAATCAACTTAGACATTATAAAGGAACGAAATAAACCGATTGAGCCCCCAAAGAAACCTGAAAAGGCTCCTTTCTTTTTGCCTTCAGTTCCATCTCTTTCAGGAGAAATAATGTTTAAGCCTACTGGGTCGACAAATGAGGAGGCAAAAGGTGGTGAAGAATCATCTAGAATAAAGGCTGCTCTAGCGCCATCAATATTCCTTCAAGCGCTTCAGTCATCTGCAGAAATGAAGAATTTTTCAGAATTTACTGATTTCATCAAAACTTTGTCTCCATCATCCCTGGATATGGAACTTCGAATTCTTCAGATTGTAGGTGATGAGGATGAAGAAGAGCCAGAAAAGTTGCTTCCAATTGAACTGCTTTTCGACTATTTTATACACGAGACTGCATGCAGAAACAATTTTGACTTTGTACAAGCTGTGATCAGGGTTTTTTTGAAGATACATGGTGAAACAATTCGACGCCAGTCAAGACTACAAGATAAGGCAAGCAAGCTCCTAGACGTTCAATGCAACACATGGCAAAGAGTAGATAAAATGTTTCAGAGTGCCAGGTGCATGGTCACTTTTCTTAGCAATTCACAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

899

Amino Acids

100.1

Weight (kDa)

6.68

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_1st PF25171 27 - 295 5.2e-100 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 101 - 265 2e-15 CDC20/Fizzy WD40 domain
Beta-prop_RIG_2nd PF23775 108 - 284 1.8e-07 RIG second beta-propeller
WD40_Gbeta PF25391 140 - 350 6.9e-16 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 141 - 292 4e-17 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 143 - 296 3e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 145 - 256 4.2e-06 WDR36/Utp21 second beta-propeller domain
WDR55 PF24796 149 - 252 4.5e-08 WDR55
Beta-prop_WDR3_2nd PF25172 149 - 255 1.5e-06 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 150 - 257 1.4e-11 WDR5 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 150 - 257 3.9e-12 WDR90/POC16, second beta-propeller
Beta-prop_HPS5 PF23756 151 - 283 2e-07 HPS5 beta-propeller
Beta-prop_WDR3_1st PF25173 152 - 340 2.6e-25 WDR3 first beta-propeller domain
WDR90_beta-prop_4th PF23342 152 - 270 1.8e-07 WDR90, 4th beta-propeller
Beta-prop_WDR5 PF25175 154 - 353 3.3e-21 WDR5 beta-propeller domain
Beta-prop_EML PF23409 154 - 293 8.5e-15 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin PF25460 172 - 340 2.9e-07 Aladin seven-bladed propeller
WDR55 PF24796 180 - 292 4.5e-10 WDR55
Beta-prop_VPS8 PF23410 191 - 287 6.5e-07 Vps8 beta-propeller
WD40_MABP1-WDR62_2nd PF24782 220 - 357 2e-10 MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st PF24817 222 - 296 5e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 222 - 296 7.4e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 224 - 340 2.7e-09 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 236 - 340 4.2e-07 TEP-1 second beta-propeller
WD40_Prp19 PF24814 307 - 575 1e-11 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 316 - 634 3.2e-103 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 398 - 649 3.9e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 424 - 623 5.8e-20 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 430 - 612 1.1e-15 THOC3 beta-propeller domain
WD40_Prp19 PF24814 465 - 614 5.7e-14 Prp19 WD40 domain
WDR55 PF24796 469 - 583 8e-07 WDR55
Beta-prop_EML_2 PF23414 475 - 583 5.4e-07 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 478 - 582 1.6e-06 MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 479 - 615 4.2e-08 WDR90/POC16, second beta-propeller
Beta-prop_WDR3_1st PF25173 513 - 618 8.2e-16 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 514 - 591 4.1e-11 WDHD1 first WD40 domain
WD40 PF00400 546 - 582 4.5e-12 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 547 - 634 3e-07 CAF1B/HIR1 beta-propeller domain
Utp21 PF04192 685 - 895 1.1e-53 Utp21 specific WD40 associated putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 737, 779, 2126
AasI GACNNNNNNGTC 2 cut(s) 1487, 1801
Acc16I TGCGCA 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 1356
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 1339
AccI GTMKAC 1 cut(s) 2237
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 4 cut(s) 149, 1320, 1339, 1609
AclWI GGATC 5 cut(s) 368, 1002, 1035, 1376, 1389
AcsI RAATTY 9 cut(s) 108, 403, 603, 1300, 1646, 2055, 2341, 2351, 2406
AcuI CTGAAG 4 cut(s) 1995, 2175, 2303, 2396
AcyI GRCGYC 1 cut(s) 2572
AdeI CACNNNGTG 1 cut(s) 665
AfaI GTAC 2 cut(s) 2049, 2523
AfeI AGCGCT 1 cut(s) 2316
AfiI CCNNNNNNNGG 4 cut(s) 1314, 1413, 1414, 2395
AflIII ACRYGT 2 cut(s) 1172, 1677
AjiI CACGTC 1 cut(s) 1508
AjnI CCWGG 3 cut(s) 1023, 2388, 2660
AjuI GAANNNNNNNTTGG 2 cut(s) 1562, 1594
Alw21I GWGCWC 3 cut(s) 175, 937, 1541
Alw26I GTCTC 8 cut(s) 564, 964, 1201, 1473, 1809, 1960, 2382, 2486
AlwI GGATC 5 cut(s) 368, 1002, 1035, 1376, 1389
Aor13HI TCCGGA 1 cut(s) 430
Aor51HI AGCGCT 1 cut(s) 2316
AoxI GGCC 2 cut(s) 1275, 1654
ApeKI GCWGC 6 cut(s) 203, 481, 546, 700, 1362, 2285
ApoI RAATTY 9 cut(s) 108, 403, 603, 1300, 1646, 2055, 2341, 2351, 2406
ArsI GACNNNNNNTTYG 4 cut(s) 63, 95, 182, 214
Asp700I GAANNNNTTC 1 cut(s) 2565
AspLEI GCGC 5 cut(s) 60, 122, 568, 2296, 2317
AspS9I GGNCC 3 cut(s) 136, 146, 1317
AsuHPI GGTGA 8 cut(s) 73, 652, 1099, 1803, 1882, 2273, 2435, 2570
AsuII TTCGAA 2 cut(s) 12, 2404
AvaII GGWCC 3 cut(s) 136, 146, 1317
BaeGI GKGCMC 2 cut(s) 265, 1408
BamHI GGATCC 1 cut(s) 1381
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 3 cut(s) 175, 1541, 2154
BauI CACGAG 2 cut(s) 660, 2489
BbsI GAAGAC 2 cut(s) 1704, 1724
Bbv12I GWGCWC 3 cut(s) 175, 937, 1541
BbvCI CCTCAGC 1 cut(s) 1980
BbvI GCAGC 6 cut(s) 190, 493, 558, 712, 1374, 2272
BcgI CGANNNNNNTGC 4 cut(s) 881, 915, 1140, 1174
BciT130I CCWGG 3 cut(s) 1025, 2390, 2662
BciVI GTATCC 2 cut(s) 427, 1177
BclI TGATCA 2 cut(s) 1846, 2532
BcoDI GTCTC 8 cut(s) 564, 964, 1201, 1473, 1809, 1960, 2382, 2486
BfaI CTAG 8 cut(s) 414, 569, 710, 1313, 1521, 2274, 2291, 2609
BfmI CTRYAG 3 cut(s) 479, 1349, 2328
BfoI RGCGCY 3 cut(s) 61, 2297, 2318
BfuAI ACCTGC 1 cut(s) 1356
BfuI GTATCC 2 cut(s) 427, 1177
BglII AGATCT 1 cut(s) 2062
BisI GCNGC 6 cut(s) 204, 482, 547, 701, 1363, 2286
BlsI GCNGC 6 cut(s) 205, 483, 548, 702, 1364, 2287
Bme1390I CCNGG 3 cut(s) 1025, 2390, 2662
Bme18I GGWCC 3 cut(s) 136, 146, 1317
BmgBI CACGTC 1 cut(s) 1508
BmgT120I GGNCC 3 cut(s) 136, 146, 1317
BmiI GGNNCC 4 cut(s) 67, 1318, 1383, 2175
BmrFI CCNGG 3 cut(s) 1025, 2390, 2662
BmrI ACTGGG 1 cut(s) 2241
BmsI GCATC 7 cut(s) 436, 722, 889, 1407, 1637, 1759, 2014
BmuI ACTGGG 1 cut(s) 2241
BoxI GACNNNNGTC 1 cut(s) 2575
BpiI GAAGAC 2 cut(s) 1704, 1724
BpmI CTGGAG 2 cut(s) 738, 1225
Bpu10I CCTNAGC 1 cut(s) 1980
Bpu14I TTCGAA 2 cut(s) 12, 2404
BsaBI GATNNNNATC 2 cut(s) 366, 532
BsaHI GRCGYC 1 cut(s) 2572
BsaJI CCNNGG 3 cut(s) 61, 1366, 2388
BsaWI WCCGGW 2 cut(s) 376, 430
BsaXI ACNNNNNCTCC 2 cut(s) 2362, 2392
Bsc4I CCNNNNNNNGG 4 cut(s) 1314, 1413, 1414, 2395
Bse1I ACTGG 5 cut(s) 833, 1716, 2095, 2236, 2575
Bse3DI GCAATG 2 cut(s) 1119, 1168
Bse8I GATNNNNATC 2 cut(s) 366, 532
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 3 cut(s) 1025, 2390, 2662
BseDI CCNNGG 3 cut(s) 61, 1366, 2388
BseGI GGATG 7 cut(s) 427, 533, 1699, 1729, 1750, 2384, 2437
BseJI GATNNNNATC 2 cut(s) 366, 532
BseLI CCNNNNNNNGG 4 cut(s) 1314, 1413, 1414, 2395
BseMI GCAATG 2 cut(s) 1119, 1168
BseMII CTCAG 2 cut(s) 1096, 1971
BseNI ACTGG 5 cut(s) 833, 1716, 2095, 2236, 2575
BseRI GAGGAG 2 cut(s) 927, 2261
BseSI GKGCMC 2 cut(s) 265, 1408
BseXI GCAGC 6 cut(s) 190, 493, 558, 712, 1374, 2272
BsgI GTGCAG 2 cut(s) 797, 1173
BshFI GGCC 2 cut(s) 1277, 1656
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 3 cut(s) 175, 937, 1541
BsiSI CCGG 2 cut(s) 377, 431
BslFI GGGAC 5 cut(s) 26, 203, 226, 1330, 1518
BslI CCNNNNNNNGG 4 cut(s) 1314, 1413, 1414, 2395
BsmAI GTCTC 8 cut(s) 564, 964, 1201, 1473, 1809, 1960, 2382, 2486
BsmBI CGTCTC 1 cut(s) 564
BsmFI GGGAC 5 cut(s) 26, 203, 226, 1330, 1518
BsnI GGCC 2 cut(s) 1277, 1656
Bsp119I TTCGAA 2 cut(s) 12, 2404
Bsp1286I GDGCHC 6 cut(s) 175, 265, 937, 1408, 1541, 2154
Bsp13I TCCGGA 1 cut(s) 430
Bsp1407I TGTACA 2 cut(s) 2047, 2521
Bsp143I GATC 9 cut(s) 236, 373, 994, 1027, 1381, 1663, 1846, 2062, 2532
BspACI CCGC 4 cut(s) 149, 1320, 1339, 1609
BspANI GGCC 2 cut(s) 1277, 1656
BspCNI CTCAG 2 cut(s) 1095, 1972
BspEI TCCGGA 1 cut(s) 430
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 4 cut(s) 67, 1318, 1383, 2175
BspMAI CTGCAG 3 cut(s) 483, 1353, 2332
BspMI ACCTGC 1 cut(s) 1356
BspPI GGATC 5 cut(s) 368, 1002, 1035, 1376, 1389
BspQI GCTCTTC 2 cut(s) 2040, 2433
BspT104I TTCGAA 2 cut(s) 12, 2404
BspT107I GGYRCC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 1339
BsrDI GCAATG 2 cut(s) 1119, 1168
BsrGI TGTACA 2 cut(s) 2047, 2521
BsrI ACTGG 5 cut(s) 833, 1716, 2095, 2236, 2575
BssECI CCNNGG 3 cut(s) 61, 1366, 2388
BssMI GATC 9 cut(s) 236, 373, 994, 1027, 1381, 1663, 1846, 2062, 2532
BssNI GRCGYC 1 cut(s) 2572
BssSI CACGAG 2 cut(s) 660, 2489
Bst2BI CACGAG 2 cut(s) 660, 2489
Bst2UI CCWGG 3 cut(s) 1025, 2390, 2662
Bst4CI ACNGT 4 cut(s) 85, 513, 915, 2694
Bst6I CTCTTC 6 cut(s) 627, 711, 1092, 1963, 2040, 2433
BstACI GRCGYC 1 cut(s) 2572
BstAUI TGTACA 2 cut(s) 2047, 2521
BstBI TTCGAA 2 cut(s) 12, 2404
BstC8I GCNNGC 3 cut(s) 2500, 2599, 2603
BstDEI CTNAG 6 cut(s) 311, 1082, 1753, 1980, 2116, 2681
BstF5I GGATG 7 cut(s) 427, 533, 1699, 1729, 1750, 2384, 2437
BstH2I RGCGCY 3 cut(s) 61, 2297, 2318
BstHHI GCGC 5 cut(s) 60, 122, 568, 2296, 2317
BstKTI GATC 9 cut(s) 239, 376, 997, 1030, 1384, 1666, 1849, 2065, 2535
BstMAI GTCTC 8 cut(s) 564, 964, 1201, 1473, 1809, 1960, 2382, 2486
BstMBI GATC 9 cut(s) 236, 373, 994, 1027, 1381, 1663, 1846, 2062, 2532
BstMWI GCNNNNNNNGC 5 cut(s) 269, 674, 1289, 1589, 2291
BstNI CCWGG 3 cut(s) 1025, 2390, 2662
BstNSI RCATGY 5 cut(s) 1176, 1296, 1681, 1781, 2502
BstPAI GACNNNNGTC 1 cut(s) 2575
BstSCI CCNGG 3 cut(s) 1023, 2388, 2660
BstSFI CTRYAG 3 cut(s) 479, 1349, 2328
BstSLI GKGCMC 2 cut(s) 265, 1408
BstV1I GCAGC 6 cut(s) 190, 493, 558, 712, 1374, 2272
BstV2I GAAGAC 2 cut(s) 1704, 1724
BstX2I RGATCY 2 cut(s) 1381, 2062
BstXI CCANNNNNNTGG 2 cut(s) 1524, 2668
BstYI RGATCY 2 cut(s) 1381, 2062
BsuI GTATCC 2 cut(s) 427, 1177
BsuRI GGCC 2 cut(s) 1277, 1656
BtgZI GCGATG 1 cut(s) 906
BtrI CACGTC 1 cut(s) 1508
BtsCI GGATG 7 cut(s) 427, 533, 1699, 1729, 1750, 2384, 2437
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 4 cut(s) 809, 840, 1294, 2102
BveI ACCTGC 1 cut(s) 1356
Cac8I GCNNGC 3 cut(s) 2500, 2599, 2603
CciI TCATGA 1 cut(s) 370
CfoI GCGC 5 cut(s) 60, 122, 568, 2296, 2317
Cfr13I GGNCC 3 cut(s) 136, 146, 1317
CpoI CGGWCCG 1 cut(s) 146
CseI GACGC 2 cut(s) 79, 2580
Csp6I GTAC 2 cut(s) 2048, 2522
CspCI CAANNNNNGTGG 2 cut(s) 1489, 1524
CspI CGGWCCG 1 cut(s) 146
CviQI GTAC 2 cut(s) 2048, 2522
DdeI CTNAG 6 cut(s) 311, 1082, 1753, 1980, 2116, 2681
DpnI GATC 9 cut(s) 238, 375, 996, 1029, 1383, 1665, 1848, 2064, 2534
DpnII GATC 9 cut(s) 236, 373, 994, 1027, 1381, 1663, 1846, 2062, 2532
DraI TTTAAA 1 cut(s) 352
DraIII CACNNNGTG 1 cut(s) 665
DrdI GACNNNNNNGTC 2 cut(s) 1487, 1801
DseDI GACNNNNNNGTC 2 cut(s) 1487, 1801
Eam1104I CTCTTC 6 cut(s) 627, 711, 1092, 1963, 2040, 2433
EarI CTCTTC 6 cut(s) 627, 711, 1092, 1963, 2040, 2433
Ecl136II GAGCTC 2 cut(s) 173, 1539
Eco147I AGGCCT 1 cut(s) 1277
Eco24I GRGCYC 3 cut(s) 175, 1541, 2154
Eco32I GATATC 1 cut(s) 1472
Eco47I GGWCC 3 cut(s) 136, 146, 1317
Eco47III AGCGCT 1 cut(s) 2316
Eco53kI GAGCTC 2 cut(s) 173, 1539
Eco57I CTGAAG 4 cut(s) 1995, 2175, 2303, 2396
EcoICRI GAGCTC 2 cut(s) 173, 1539
EcoRI GAATTC 1 cut(s) 2406
EcoRII CCWGG 3 cut(s) 1023, 2388, 2660
EcoRV GATATC 1 cut(s) 1472
EcoT22I ATGCAT 2 cut(s) 429, 950
EcoT38I GRGCYC 3 cut(s) 175, 1541, 2154
Esp3I CGTCTC 1 cut(s) 564
FaqI GGGAC 5 cut(s) 26, 203, 226, 1330, 1518
FauNDI CATATG 4 cut(s) 208, 743, 1179, 1198
FbaI TGATCA 2 cut(s) 1846, 2532
FblI GTMKAC 1 cut(s) 2237
Fnu4HI GCNGC 6 cut(s) 204, 482, 547, 701, 1363, 2286
FokI GGATG 7 cut(s) 414, 540, 1706, 1736, 1757, 2371, 2444
FriOI GRGCYC 3 cut(s) 175, 1541, 2154
Fsp4HI GCNGC 6 cut(s) 204, 482, 547, 701, 1363, 2286
FspBI CTAG 8 cut(s) 414, 569, 710, 1313, 1521, 2274, 2291, 2609
FspI TGCGCA 1 cut(s) 121
GlaI GCGC 5 cut(s) 59, 121, 567, 2295, 2316
GluI GCNGC 6 cut(s) 204, 482, 547, 701, 1363, 2286
GsuI CTGGAG 2 cut(s) 738, 1225
HaeII RGCGCY 3 cut(s) 61, 2297, 2318
HaeIII GGCC 2 cut(s) 1277, 1656
HapII CCGG 2 cut(s) 377, 431
HgaI GACGC 2 cut(s) 79, 2580
HhaI GCGC 5 cut(s) 60, 122, 568, 2296, 2317
Hin1I GRCGYC 1 cut(s) 2572
Hin6I GCGC 5 cut(s) 58, 120, 566, 2294, 2315
HinP1I GCGC 5 cut(s) 58, 120, 566, 2294, 2315
HincII GTYRAC 1 cut(s) 2238
HindII GTYRAC 1 cut(s) 2238
HindIII AAGCTT 1 cut(s) 2104
HpaII CCGG 2 cut(s) 377, 431
HphI GGTGA 8 cut(s) 73, 652, 1099, 1803, 1882, 2273, 2435, 2570
Hpy166II GTNNAC 2 cut(s) 613, 2238
Hpy188I TCNGA 9 cut(s) 856, 1242, 1390, 1975, 1990, 2011, 2350, 2415, 2655
Hpy8I GTNNAC 2 cut(s) 613, 2238
Hpy99I CGWCG 3 cut(s) 95, 146, 2574
HpyCH4III ACNGT 4 cut(s) 85, 513, 915, 2694
HpyCH4IV ACGT 5 cut(s) 399, 644, 1054, 1507, 2613
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 674, 1289, 1589, 2291
HpyF3I CTNAG 6 cut(s) 311, 1082, 1753, 1980, 2116, 2681
HpySE526I ACGT 5 cut(s) 399, 644, 1054, 1507, 2613
Hsp92I GRCGYC 1 cut(s) 2572
HspAI GCGC 5 cut(s) 58, 120, 566, 2294, 2315
Kpn2I TCCGGA 1 cut(s) 430
Ksp22I TGATCA 2 cut(s) 1846, 2532
Kzo9I GATC 9 cut(s) 236, 373, 994, 1027, 1381, 1663, 1846, 2062, 2532
LguI GCTCTTC 2 cut(s) 2040, 2433
LmnI GCTCC 5 cut(s) 940, 1231, 1536, 2179, 2610
Lsp1109I GCAGC 6 cut(s) 190, 493, 558, 712, 1374, 2272
LweI GCATC 7 cut(s) 436, 722, 889, 1407, 1637, 1759, 2014
MaeI CTAG 8 cut(s) 414, 569, 710, 1313, 1521, 2274, 2291, 2609
MaeII ACGT 5 cut(s) 399, 644, 1054, 1507, 2613
MaeIII GTNAC 8 cut(s) 79, 640, 670, 1168, 1669, 1792, 2068, 2671
MalI GATC 9 cut(s) 238, 375, 996, 1029, 1383, 1665, 1848, 2064, 2534
MbiI CCGCTC 1 cut(s) 1339
MboI GATC 9 cut(s) 236, 373, 994, 1027, 1381, 1663, 1846, 2062, 2532
MfeI CAATTG 3 cut(s) 115, 152, 2460
MflI RGATCY 2 cut(s) 1381, 2062
MhlI GDGCHC 6 cut(s) 175, 265, 937, 1408, 1541, 2154
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 5 cut(s) 361, 375, 1310, 1405, 1981
Mph1103I ATGCAT 2 cut(s) 429, 950
MroI TCCGGA 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 2565
MslI CAYNNNNRTG 2 cut(s) 1522, 1782
MspA1I CMGCKG 2 cut(s) 549, 1322
MspI CCGG 2 cut(s) 377, 431
MspR9I CCNGG 3 cut(s) 1025, 2390, 2662
MunI CAATTG 3 cut(s) 115, 152, 2460
MvaI CCWGG 3 cut(s) 1025, 2390, 2662
MwoI GCNNNNNNNGC 5 cut(s) 269, 674, 1289, 1589, 2291
NdeI CATATG 4 cut(s) 208, 743, 1179, 1198
NdeII GATC 9 cut(s) 236, 373, 994, 1027, 1381, 1663, 1846, 2062, 2532
NlaIV GGNNCC 4 cut(s) 67, 1318, 1383, 2175
NmeAIII GCCGAG 2 cut(s) 42, 1391
NmuCI GTSAC 5 cut(s) 79, 640, 670, 1792, 2671
NsbI TGCGCA 1 cut(s) 121
NsiI ATGCAT 2 cut(s) 429, 950
NspI RCATGY 5 cut(s) 1176, 1296, 1681, 1781, 2502
NspV TTCGAA 2 cut(s) 12, 2404
PaeI GCATGC 1 cut(s) 2502
PagI TCATGA 1 cut(s) 370
PceI AGGCCT 1 cut(s) 1277
PciI ACATGT 2 cut(s) 1172, 1677
PciSI GCTCTTC 2 cut(s) 2040, 2433
PdmI GAANNNNTTC 1 cut(s) 2565
PfeI GAWTC 9 cut(s) 6, 166, 367, 748, 1439, 1873, 1907, 1985, 2267
PfoI TCCNGGA 1 cut(s) 1023
PkrI GCNGC 6 cut(s) 205, 483, 548, 702, 1364, 2287
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
PscI ACATGT 2 cut(s) 1172, 1677
PshAI GACNNNNGTC 1 cut(s) 2575
PsiI TTATAA 3 cut(s) 737, 779, 2126
Psp124BI GAGCTC 2 cut(s) 175, 1541
Psp6I CCWGG 3 cut(s) 1023, 2388, 2660
PspGI CCWGG 3 cut(s) 1023, 2388, 2660
PspN4I GGNNCC 4 cut(s) 67, 1318, 1383, 2175
PspPI GGNCC 3 cut(s) 136, 146, 1317
PstI CTGCAG 3 cut(s) 483, 1353, 2332
PsuI RGATCY 2 cut(s) 1381, 2062
PvuII CAGCTG 1 cut(s) 549
RsaI GTAC 2 cut(s) 2049, 2523
RsaNI GTAC 2 cut(s) 2048, 2522
RseI CAYNNNNRTG 2 cut(s) 1522, 1782
Rsr2I CGGWCCG 1 cut(s) 146
RsrII CGGWCCG 1 cut(s) 146
SacI GAGCTC 2 cut(s) 175, 1541
SalI GTCGAC 1 cut(s) 2236
SapI GCTCTTC 2 cut(s) 2040, 2433
SatI GCNGC 6 cut(s) 204, 482, 547, 701, 1363, 2286
Sau3AI GATC 9 cut(s) 236, 373, 994, 1027, 1381, 1663, 1846, 2062, 2532
Sau96I GGNCC 3 cut(s) 136, 146, 1317
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 3 cut(s) 1025, 2390, 2662
SduI GDGCHC 6 cut(s) 175, 265, 937, 1408, 1541, 2154
SfaNI GCATC 7 cut(s) 436, 722, 889, 1407, 1637, 1759, 2014
SfcI CTRYAG 3 cut(s) 479, 1349, 2328
SfuI TTCGAA 2 cut(s) 12, 2404
SinI GGWCC 3 cut(s) 136, 146, 1317
SmiMI CAYNNNNRTG 2 cut(s) 1522, 1782
SphI GCATGC 1 cut(s) 2502
SseBI AGGCCT 1 cut(s) 1277
SsiI CCGC 4 cut(s) 149, 1320, 1339, 1609
SspI AATATT 1 cut(s) 2304
SspMI CTAG 8 cut(s) 414, 569, 710, 1313, 1521, 2274, 2291, 2609
SstI GAGCTC 2 cut(s) 175, 1541
StuI AGGCCT 1 cut(s) 1277
StyD4I CCNGG 3 cut(s) 1023, 2388, 2660
TaaI ACNGT 4 cut(s) 85, 513, 915, 2694
TaiI ACGT 5 cut(s) 402, 647, 1057, 1510, 2616
TaqI TCGA 9 cut(s) 12, 169, 753, 1735, 1961, 2237, 2404, 2475, 2569
TaqII GACCGA 1 cut(s) 134
TatI WGTACW 2 cut(s) 2047, 2521
TfiI GAWTC 9 cut(s) 6, 166, 367, 748, 1439, 1873, 1907, 1985, 2267
TscAI CASTG 4 cut(s) 816, 840, 1294, 2102
TseFI GTSAC 5 cut(s) 79, 640, 670, 1792, 2671
TseI GCWGC 6 cut(s) 203, 481, 546, 700, 1362, 2285
Tsp45I GTSAC 5 cut(s) 79, 640, 670, 1792, 2671
TspDTI ATGAA 7 cut(s) 596, 645, 837, 843, 2351, 2353, 2448
TspGWI ACGGA 3 cut(s) 28, 40, 1491
TspRI CASTG 4 cut(s) 816, 840, 1294, 2102
VpaK11BI GGWCC 3 cut(s) 136, 146, 1317
XapI RAATTY 9 cut(s) 108, 403, 603, 1300, 1646, 2055, 2341, 2351, 2406
XbaI TCTAGA 2 cut(s) 1520, 2273
XceI RCATGY 5 cut(s) 1176, 1296, 1681, 1781, 2502
XmiI GTMKAC 1 cut(s) 2237
XmnI GAANNNNTTC 1 cut(s) 2565
XspI CTAG 8 cut(s) 414, 569, 710, 1313, 1521, 2274, 2291, 2609
Zsp2I ATGCAT 2 cut(s) 429, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.