Rmu_sc0003239.1_g000008

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003239.1
OG0001399
Physical Location & Seq
Forward (+)
52085 .. 58084
6000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003239.1_g000008.1.cds

Sequence Viewer

Length: 1509 bp
atgggaatcttcgaacccttcagagcaatcggctacacaaccacctctgttcccttctccgttcagcgcctcggcactgaagccttcgtcaccgtcagcgtcggcaaagccttccaaatttacaattgcgcaaagctcactctggtcctcgtcggtccgcaattgccgaagaagattcgagctcttgcttcgtatcgggactacacattcgctgcatatgggactgatatagctgtttttaagcgatctcatcaggttgctacgtggagcgcccataatgcgaaggtcaatttgttgctattgtttggagagcatatcctaagtgttgatgttgaaggtaatctgtatatatggacatttaaaggaattgatgagaatcatgatccggttggacatattaagttggacgtaaattttactcctagctgtataatgcatccggatacctacttaaataaggttatcattgggagtcaagaaggttctctgcagctttggaatatcagcacaaagaaaaaactgtatgagttcaagggttggaaatcttctatatgcagctgtgtttcgtctcctgcgctagatgttgttgcagttggttgtgctgatggaaaaattcatgttcacaacatacgatttgatgaagagttggtgacgttttcccattcaacacgaggtgctgtgactgccttatctttcagcacagatgggcagcctcttctagcatctggaggttcttctggtgttataagcatatggaatctcgaaaaaagaaggcttcaatcagttataaaagaggcacatgatggttctatactttcactgcacttttttgtgaatgaaccagtgttaatgagttcatcatcagacaattctattaaaatgtggatttttgacacaagcgatggagatgctcgtcttttacggtttagaagtggtcatagtgctcctccacaatgcataaggttttatgcaaatgggagacatattctatcggctggtcaggatcgtgcctttcgccttttctctataatccaggatcaacaaagtagagagctttctcaacgtcatataacaaaacgagcaaagaaactcagggtgaaggaggaagagataaaactgaaacctgtcattgcttttgattgtgctgaaataagagagcgagattggtgcaatgttgttacatgtcatatggatactgcacaggcatatgtctggagacttcaaaactttgttcttggggagcatattctgaaaccaagaccagaaaacccaacacctgtgaaggcctgtgccatcagtgcatgtggaaattttgccatactagggaccgctggtggttggattgagcggttcaacctgcagtcaggaagcagccgaggtaattatgtggatccatcggaaagaagcatctgtgcccatgatggggaagttgttggaattgcttgtgattcaactaatactcacatgataagtgctggatatcacggagacataaaggtcagtctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

502

Amino Acids

55.68

Weight (kDa)

8.59

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 746, 788
AasI GACNNNNNNGTC 1 cut(s) 1496
Acc16I TGCGCA 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 1365
AccBSI CCGCTC 1 cut(s) 1348
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 3 cut(s) 158, 1329, 1348
AclWI GGATC 5 cut(s) 377, 1011, 1044, 1385, 1398
AcsI RAATTY 4 cut(s) 117, 412, 612, 1309
AcuI CTGAAG 2 cut(s) 4, 99
AdeI CACNNNGTG 1 cut(s) 674
AfiI CCNNNNNNNGG 3 cut(s) 1323, 1422, 1423
AflIII ACRYGT 1 cut(s) 1181
AgsI TTSAA 7 cut(s) 335, 532, 666, 779, 1223, 1354, 1452
AjnI CCWGG 1 cut(s) 1032
AluBI AGCT 7 cut(s) 136, 182, 233, 426, 493, 558, 1054
AluI AGCT 7 cut(s) 136, 182, 233, 426, 493, 558, 1054
Alw21I GWGCWC 2 cut(s) 184, 946
Alw26I GTCTC 4 cut(s) 573, 973, 1210, 1482
AlwI GGATC 5 cut(s) 377, 1011, 1044, 1385, 1398
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 1 cut(s) 1284
ApeKI GCWGC 5 cut(s) 212, 490, 555, 709, 1371
ApoI RAATTY 4 cut(s) 117, 412, 612, 1309
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspLEI GCGC 4 cut(s) 69, 131, 272, 577
AspS9I GGNCC 3 cut(s) 145, 155, 1326
AsuHPI GGTGA 3 cut(s) 82, 661, 1108
AsuII TTCGAA 1 cut(s) 12
AvaII GGWCC 3 cut(s) 145, 155, 1326
BaeGI GKGCMC 1 cut(s) 1417
BamHI GGATCC 1 cut(s) 1390
BanII GRGCYC 1 cut(s) 184
BauI CACGAG 1 cut(s) 669
Bbv12I GWGCWC 2 cut(s) 184, 946
BbvI GCAGC 5 cut(s) 199, 502, 567, 721, 1383
BccI CCATC 7 cut(s) 599, 698, 797, 896, 1301, 1402, 1415
BcgI CGANNNNNNTGC 4 cut(s) 890, 924, 1149, 1183
BciT130I CCWGG 1 cut(s) 1034
BciVI GTATCC 2 cut(s) 436, 1186
BcoDI GTCTC 4 cut(s) 573, 973, 1210, 1482
BfaI CTAG 4 cut(s) 423, 578, 719, 1322
BfmI CTRYAG 2 cut(s) 488, 1358
BfoI RGCGCY 2 cut(s) 70, 273
BfuAI ACCTGC 1 cut(s) 1365
BfuI GTATCC 2 cut(s) 436, 1186
BisI GCNGC 5 cut(s) 213, 491, 556, 710, 1372
BlsI GCNGC 5 cut(s) 214, 492, 557, 711, 1373
Bme1390I CCNGG 1 cut(s) 1034
Bme18I GGWCC 3 cut(s) 145, 155, 1326
BmgT120I GGNCC 3 cut(s) 145, 155, 1326
BmiI GGNNCC 2 cut(s) 1327, 1392
BmrFI CCNGG 1 cut(s) 1034
BmsI GCATC 4 cut(s) 445, 731, 898, 1416
BpmI CTGGAG 2 cut(s) 747, 1234
Bpu14I TTCGAA 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 70, 1375
BsaWI WCCGGW 2 cut(s) 385, 439
Bsc4I CCNNNNNNNGG 3 cut(s) 1323, 1422, 1423
Bse1I ACTGG 1 cut(s) 842
Bse3DI GCAATG 2 cut(s) 1128, 1177
Bse8I GATNNNNATC 1 cut(s) 375
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 1 cut(s) 1034
BseDI CCNNGG 2 cut(s) 70, 1375
BseGI GGATG 1 cut(s) 436
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 3 cut(s) 1323, 1422, 1423
BseMI GCAATG 2 cut(s) 1128, 1177
BseMII CTCAG 1 cut(s) 1105
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 1 cut(s) 936
BseSI GKGCMC 1 cut(s) 1417
BseXI GCAGC 5 cut(s) 199, 502, 567, 721, 1383
BsgI GTGCAG 2 cut(s) 806, 1182
BshFI GGCC 1 cut(s) 1286
BsiHKAI GWGCWC 2 cut(s) 184, 946
BsiSI CCGG 2 cut(s) 386, 440
BslFI GGGAC 3 cut(s) 212, 235, 1339
BslI CCNNNNNNNGG 3 cut(s) 1323, 1422, 1423
BsmAI GTCTC 4 cut(s) 573, 973, 1210, 1482
BsmBI CGTCTC 1 cut(s) 573
BsmFI GGGAC 3 cut(s) 212, 235, 1339
BsnI GGCC 1 cut(s) 1286
Bsp119I TTCGAA 1 cut(s) 12
Bsp1286I GDGCHC 3 cut(s) 184, 946, 1417
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 5 cut(s) 245, 382, 1003, 1036, 1390
BspACI CCGC 3 cut(s) 158, 1329, 1348
BspANI GGCC 1 cut(s) 1286
BspCNI CTCAG 1 cut(s) 1104
BspEI TCCGGA 1 cut(s) 439
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 1327, 1392
BspMAI CTGCAG 2 cut(s) 492, 1362
BspMI ACCTGC 1 cut(s) 1365
BspPI GGATC 5 cut(s) 377, 1011, 1044, 1385, 1398
BspT104I TTCGAA 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 1348
BsrDI GCAATG 2 cut(s) 1128, 1177
BsrI ACTGG 1 cut(s) 842
BssECI CCNNGG 2 cut(s) 70, 1375
BssMI GATC 5 cut(s) 245, 382, 1003, 1036, 1390
BssSI CACGAG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 1034
Bst4CI ACNGT 3 cut(s) 94, 522, 924
Bst6I CTCTTC 3 cut(s) 636, 720, 1101
BstBAI YACGTR 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 320, 1091
BstF5I GGATG 1 cut(s) 436
BstH2I RGCGCY 2 cut(s) 70, 273
BstHHI GCGC 4 cut(s) 69, 131, 272, 577
BstKTI GATC 5 cut(s) 248, 385, 1006, 1039, 1393
BstMAI GTCTC 4 cut(s) 573, 973, 1210, 1482
BstMBI GATC 5 cut(s) 245, 382, 1003, 1036, 1390
BstMWI GCNNNNNNNGC 3 cut(s) 278, 683, 1298
BstNI CCWGG 1 cut(s) 1034
BstNSI RCATGY 2 cut(s) 1185, 1305
BstSCI CCNGG 1 cut(s) 1032
BstSFI CTRYAG 2 cut(s) 488, 1358
BstSLI GKGCMC 1 cut(s) 1417
BstV1I GCAGC 5 cut(s) 199, 502, 567, 721, 1383
BstX2I RGATCY 1 cut(s) 1390
BstYI RGATCY 1 cut(s) 1390
BsuI GTATCC 2 cut(s) 436, 1186
BsuRI GGCC 1 cut(s) 1286
BtgZI GCGATG 1 cut(s) 915
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 4 cut(s) 75, 818, 849, 1303
BveI ACCTGC 1 cut(s) 1365
CciI TCATGA 1 cut(s) 379
CfoI GCGC 4 cut(s) 69, 131, 272, 577
Cfr13I GGNCC 3 cut(s) 145, 155, 1326
CpoI CGGWCCG 1 cut(s) 155
CseI GACGC 1 cut(s) 88
CspI CGGWCCG 1 cut(s) 155
CviAII CATG 7 cut(s) 380, 617, 800, 1182, 1302, 1418, 1465
DdeI CTNAG 2 cut(s) 320, 1091
DpnI GATC 5 cut(s) 247, 384, 1005, 1038, 1392
DpnII GATC 5 cut(s) 245, 382, 1003, 1036, 1390
DraI TTTAAA 1 cut(s) 361
DraIII CACNNNGTG 1 cut(s) 674
DrdI GACNNNNNNGTC 1 cut(s) 1496
DseDI GACNNNNNNGTC 1 cut(s) 1496
Eam1104I CTCTTC 3 cut(s) 636, 720, 1101
EarI CTCTTC 3 cut(s) 636, 720, 1101
Ecl136II GAGCTC 1 cut(s) 182
Eco147I AGGCCT 1 cut(s) 1286
Eco24I GRGCYC 1 cut(s) 184
Eco32I GATATC 1 cut(s) 1481
Eco47I GGWCC 3 cut(s) 145, 155, 1326
Eco53kI GAGCTC 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 4, 99
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 1032
EcoRV GATATC 1 cut(s) 1481
EcoT22I ATGCAT 2 cut(s) 438, 959
EcoT38I GRGCYC 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 573
FaeI CATG 7 cut(s) 383, 620, 803, 1185, 1305, 1421, 1468
FaqI GGGAC 3 cut(s) 212, 235, 1339
FatI CATG 7 cut(s) 379, 616, 799, 1181, 1301, 1417, 1464
FauNDI CATATG 4 cut(s) 217, 752, 1188, 1207
Fnu4HI GCNGC 5 cut(s) 213, 491, 556, 710, 1372
FokI GGATG 1 cut(s) 423
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 5 cut(s) 213, 491, 556, 710, 1372
FspBI CTAG 4 cut(s) 423, 578, 719, 1322
FspI TGCGCA 1 cut(s) 130
GlaI GCGC 4 cut(s) 68, 130, 271, 576
GluI GCNGC 5 cut(s) 213, 491, 556, 710, 1372
GsuI CTGGAG 2 cut(s) 747, 1234
HaeII RGCGCY 2 cut(s) 70, 273
HaeIII GGCC 1 cut(s) 1286
HapII CCGG 2 cut(s) 386, 440
HgaI GACGC 1 cut(s) 88
HhaI GCGC 4 cut(s) 69, 131, 272, 577
Hin1II CATG 7 cut(s) 383, 620, 803, 1185, 1305, 1421, 1468
Hin6I GCGC 4 cut(s) 67, 129, 270, 575
HinP1I GCGC 4 cut(s) 67, 129, 270, 575
HinfI GANTC 6 cut(s) 6, 175, 376, 472, 757, 1448
HpaII CCGG 2 cut(s) 386, 440
HphI GGTGA 3 cut(s) 82, 661, 1108
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 4 cut(s) 23, 865, 1251, 1399
Hpy188III TCNNGA 9 cut(s) 197, 380, 440, 476, 726, 761, 1001, 1213, 1365
Hpy8I GTNNAC 1 cut(s) 622
Hpy99I CGWCG 2 cut(s) 104, 155
HpyCH4III ACNGT 3 cut(s) 94, 522, 924
HpyCH4IV ACGT 4 cut(s) 263, 408, 653, 1063
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 683, 1298
HpyF3I CTNAG 2 cut(s) 320, 1091
HpySE526I ACGT 4 cut(s) 263, 408, 653, 1063
Hsp92II CATG 7 cut(s) 383, 620, 803, 1185, 1305, 1421, 1468
HspAI GCGC 4 cut(s) 67, 129, 270, 575
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 5 cut(s) 245, 382, 1003, 1036, 1390
LmnI GCTCC 3 cut(s) 267, 949, 1240
Lsp1109I GCAGC 5 cut(s) 199, 502, 567, 721, 1383
LweI GCATC 4 cut(s) 445, 731, 898, 1416
MaeI CTAG 4 cut(s) 423, 578, 719, 1322
MaeII ACGT 4 cut(s) 263, 408, 653, 1063
MaeIII GTNAC 4 cut(s) 88, 649, 679, 1177
MalI GATC 5 cut(s) 247, 384, 1005, 1038, 1392
MbiI CCGCTC 1 cut(s) 1348
MboI GATC 5 cut(s) 245, 382, 1003, 1036, 1390
MboII GAAGA 7 cut(s) 181, 184, 537, 653, 707, 726, 1118
MfeI CAATTG 2 cut(s) 124, 161
MflI RGATCY 1 cut(s) 1390
MhlI GDGCHC 3 cut(s) 184, 946, 1417
MlyI GAGTC 1 cut(s) 481
MmeI TCCRAC 5 cut(s) 370, 384, 518, 1319, 1414
Mph1103I ATGCAT 2 cut(s) 438, 959
MroI TCCGGA 1 cut(s) 439
MseI TTAA 6 cut(s) 240, 360, 399, 452, 848, 876
MspA1I CMGCKG 2 cut(s) 558, 1331
MspI CCGG 2 cut(s) 386, 440
MspR9I CCNGG 1 cut(s) 1034
MunI CAATTG 2 cut(s) 124, 161
MvaI CCWGG 1 cut(s) 1034
MwoI GCNNNNNNNGC 3 cut(s) 278, 683, 1298
NdeI CATATG 4 cut(s) 217, 752, 1188, 1207
NdeII GATC 5 cut(s) 245, 382, 1003, 1036, 1390
NlaIII CATG 7 cut(s) 383, 620, 803, 1185, 1305, 1421, 1468
NlaIV GGNNCC 2 cut(s) 1327, 1392
NmeAIII GCCGAG 2 cut(s) 51, 1400
NmuCI GTSAC 3 cut(s) 88, 649, 679
NsbI TGCGCA 1 cut(s) 130
NsiI ATGCAT 2 cut(s) 438, 959
NspI RCATGY 2 cut(s) 1185, 1305
NspV TTCGAA 1 cut(s) 12
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 1 cut(s) 1286
PciI ACATGT 1 cut(s) 1181
PfeI GAWTC 5 cut(s) 6, 175, 376, 757, 1448
PfoI TCCNGGA 1 cut(s) 1032
PkrI GCNGC 5 cut(s) 214, 492, 557, 711, 1373
PleI GAGTC 1 cut(s) 480
PpsI GAGTC 1 cut(s) 480
Ppu21I YACGTR 1 cut(s) 264
PscI ACATGT 1 cut(s) 1181
PsiI TTATAA 2 cut(s) 746, 788
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 1032
PspGI CCWGG 1 cut(s) 1032
PspN4I GGNNCC 2 cut(s) 1327, 1392
PspPI GGNCC 3 cut(s) 145, 155, 1326
PstI CTGCAG 2 cut(s) 492, 1362
PsuI RGATCY 1 cut(s) 1390
PvuII CAGCTG 1 cut(s) 558
Rsr2I CGGWCCG 1 cut(s) 155
RsrII CGGWCCG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 6 cut(s) 240, 360, 399, 452, 848, 876
SatI GCNGC 5 cut(s) 213, 491, 556, 710, 1372
Sau3AI GATC 5 cut(s) 245, 382, 1003, 1036, 1390
Sau96I GGNCC 3 cut(s) 145, 155, 1326
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 1034
SduI GDGCHC 3 cut(s) 184, 946, 1417
SfaNI GCATC 4 cut(s) 445, 731, 898, 1416
SfcI CTRYAG 2 cut(s) 488, 1358
SfuI TTCGAA 1 cut(s) 12
SinI GGWCC 3 cut(s) 145, 155, 1326
SseBI AGGCCT 1 cut(s) 1286
SsiI CCGC 3 cut(s) 158, 1329, 1348
SspMI CTAG 4 cut(s) 423, 578, 719, 1322
SstI GAGCTC 1 cut(s) 184
StuI AGGCCT 1 cut(s) 1286
StyD4I CCNGG 1 cut(s) 1032
TaaI ACNGT 3 cut(s) 94, 522, 924
TaiI ACGT 4 cut(s) 266, 411, 656, 1066
TaqI TCGA 3 cut(s) 12, 178, 762
TaqII GACCGA 1 cut(s) 143
TfiI GAWTC 5 cut(s) 6, 175, 376, 757, 1448
Tru1I TTAA 6 cut(s) 240, 360, 399, 452, 848, 876
Tru9I TTAA 6 cut(s) 240, 360, 399, 452, 848, 876
TscAI CASTG 4 cut(s) 82, 825, 849, 1303
TseFI GTSAC 3 cut(s) 88, 649, 679
TseI GCWGC 5 cut(s) 212, 490, 555, 709, 1371
Tsp45I GTSAC 3 cut(s) 88, 649, 679
TspDTI ATGAA 4 cut(s) 605, 654, 846, 852
TspGWI ACGGA 2 cut(s) 49, 1500
TspRI CASTG 4 cut(s) 82, 825, 849, 1303
VpaK11BI GGWCC 3 cut(s) 145, 155, 1326
XapI RAATTY 4 cut(s) 117, 412, 612, 1309
XceI RCATGY 2 cut(s) 1185, 1305
XspI CTAG 4 cut(s) 423, 578, 719, 1322
Zsp2I ATGCAT 2 cut(s) 438, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.