RchiOBHm_Chr4g0397331

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001399
Physical Location & Seq
Reverse (-)
13769643 .. 13770929
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36965

Sequence Viewer

Length: 366 bp
ATGAAGAATTTTTCAGAATTTACTGATTTCATCAAAACTTTGGCTCCATCACCCCTGGATACGGAACTTCGGATTCTTCAGATTGTAGGTGATGAGGATGAAGAAGAGCCAGAAAAGTTGCTTCCAATTGAACTGCTTCTCGACTATTTTATACACGAGACTGCATGCAGAAACAATTTTGACTTTGTGCAAGCTGTGATCAGGGTTTTTCTGAAGATAGATGGCGAAACAATTCGATGCCAGTCAAGACTACAGGATAAGGCAAGCAAGCTCCTAGACGTTCAATGCAACACATGGCAAAGAGTAGATAAAATGTTTCAGTGTGCCAGGTGCATGGTCACTTTTCTTAGCAATTCACAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

121

Amino Acids

14.19

Weight (kDa)

4.75

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp21 PF04192 2 - 117 5.4e-18 Utp21 specific WD40 associated putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 7, 17
AcuI CTGAAG 2 cut(s) 62, 233
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 2 cut(s) 131, 284
AjnI CCWGG 2 cut(s) 54, 326
AluBI AGCT 2 cut(s) 194, 271
AluI AGCT 2 cut(s) 194, 271
Alw26I GTCTC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 7, 17
Asp700I GAANNNNTTC 2 cut(s) 135, 231
AsuHPI GGTGA 2 cut(s) 42, 101
BauI CACGAG 1 cut(s) 155
BccI CCATC 2 cut(s) 55, 215
BciT130I CCWGG 2 cut(s) 56, 328
BciVI GTATCC 1 cut(s) 52
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 251
BfuI GTATCC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 56, 328
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 56, 328
BmsI GCATC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 2 cut(s) 56, 328
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 198
BssSI CACGAG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 56, 328
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 4 cut(s) 166, 192, 265, 269
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 1 cut(s) 198
BstNI CCWGG 2 cut(s) 56, 328
BstNSI RCATGY 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 54, 326
BstSFI CTRYAG 1 cut(s) 251
BstXI CCANNNNNNTGG 1 cut(s) 334
BsuI GTATCC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 4 cut(s) 166, 192, 265, 269
CviAII CATG 3 cut(s) 165, 294, 334
CviJI RGCY 4 cut(s) 44, 109, 194, 271
CviKI_1 RGCY 4 cut(s) 44, 109, 194, 271
DdeI CTNAG 1 cut(s) 347
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 62, 233
EcoRII CCWGG 2 cut(s) 54, 326
FaeI CATG 3 cut(s) 168, 297, 337
FaiI YATR 4 cut(s) 152, 166, 295, 335
FatI CATG 3 cut(s) 164, 293, 333
FbaI TGATCA 1 cut(s) 198
FokI GGATG 1 cut(s) 110
FspBI CTAG 1 cut(s) 275
Hin1II CATG 3 cut(s) 168, 297, 337
HinfI GANTC 1 cut(s) 73
HphI GGTGA 2 cut(s) 42, 101
Hpy188I TCNGA 4 cut(s) 16, 72, 81, 213
Hpy188III TCNNGA 2 cut(s) 140, 246
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 5 cut(s) 164, 168, 190, 288, 333
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 3 cut(s) 168, 297, 337
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 1 cut(s) 198
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 49, 276
LpnPI CCDG 8 cut(s) 41, 68, 123, 187, 239, 254, 313, 340
LweI GCATC 1 cut(s) 227
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 337
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 5 cut(s) 16, 68, 113, 116, 226
MfeI CAATTG 1 cut(s) 126
MluCI AATT 6 cut(s) 7, 17, 126, 175, 231, 352
MnlI CCTC 1 cut(s) 88
MroXI GAANNNNTTC 2 cut(s) 135, 231
MspR9I CCNGG 2 cut(s) 56, 328
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 2 cut(s) 56, 328
NdeII GATC 1 cut(s) 198
NlaIII CATG 3 cut(s) 168, 297, 337
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 168
PaeI GCATGC 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 99
PdmI GAANNNNTTC 2 cut(s) 135, 231
PfeI GAWTC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 54, 326
PspGI CCWGG 2 cut(s) 54, 326
PspN4I GGNNCC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 198
ScrFI CCNGG 2 cut(s) 56, 328
SetI ASST 5 cut(s) 91, 196, 273, 282, 332
SfaNI GCATC 1 cut(s) 227
SfcI CTRYAG 1 cut(s) 251
SphI GCATGC 1 cut(s) 168
Sse9I AATT 6 cut(s) 7, 17, 126, 175, 231, 352
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 54, 326
TaaI ACNGT 1 cut(s) 360
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 141, 235
TasI AATT 6 cut(s) 7, 17, 126, 175, 231, 352
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 337
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 3 cut(s) 17, 19, 114
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 326
XapI RAATTY 2 cut(s) 7, 17
XceI RCATGY 1 cut(s) 168
XmnI GAANNNNTTC 2 cut(s) 135, 231
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.