Rmu_sc0003929.1_g000001

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003929.1
OG0001399
Physical Location & Seq
Forward (+)
1 .. 3641
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003929.1_g000001.1.cds

Sequence Viewer

Length: 382 bp
ctgtgtttcatctcctgcactagatgttgttgcagttggttgtgctgatggaaaaattcatgttcacaacatacaatatgatgaagagttagtgacgtttactcattcaacacgaggtgctgtgactgccttatctttcagcacaggtaagaaagtcaggctgttgggacagctggtggttggattgagcggatcaacctgcagtcaggaagcaggaagcagccgatgtagttatgtggacccatcggaaagaagcatctgtgcccatgatggggaagttgttggaattgcttgtgattcaactaatactcacatgataagtgctggatatcatggagacataaaggtctgggatttcaaggaaacgtggagtgccatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

126

Amino Acids

13.33

Weight (kDa)

5.56

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 1 cut(s) 190
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 55
AdeI CACNNNGTG 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 271, 272
AgsI TTSAA 3 cut(s) 109, 301, 359
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 266
BauI CACGAG 1 cut(s) 112
BbvI GCAGC 1 cut(s) 232
BccI CCATC 3 cut(s) 42, 251, 264
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 2 cut(s) 21, 380
BfmI CTRYAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 272
BseLI CCNNNNNNNGG 2 cut(s) 271, 272
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 1 cut(s) 232
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 271, 272
BsmAI GTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 190
BssMI GATC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 79
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 232
BveI ACCTGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 239
CviAII CATG 4 cut(s) 60, 267, 314, 333
CviJI RGCY 3 cut(s) 161, 173, 223
CviKI_1 RGCY 3 cut(s) 161, 173, 223
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DraIII CACNNNGTG 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 345
DseDI GACNNNNNNGTC 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 239
EcoRV GATATC 1 cut(s) 330
FaeI CATG 4 cut(s) 63, 270, 317, 336
FaiI YATR 8 cut(s) 61, 72, 79, 235, 268, 315, 334, 342
FaqI GGGAC 1 cut(s) 181
FatI CATG 4 cut(s) 59, 266, 313, 332
Fnu4HI GCNGC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 2 cut(s) 21, 380
GluI GCNGC 1 cut(s) 221
Hin1II CATG 4 cut(s) 63, 270, 317, 336
HinfI GANTC 1 cut(s) 297
Hpy166II GTNNAC 3 cut(s) 65, 100, 239
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 3 cut(s) 65, 100, 239
HpyCH4IV ACGT 2 cut(s) 96, 366
HpyCH4V TGCA 3 cut(s) 18, 33, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 96, 366
Hsp92II CATG 4 cut(s) 63, 270, 317, 336
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 9 cut(s) 28, 130, 143, 159, 192, 199, 212, 310, 335
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 21, 380
MaeII ACGT 2 cut(s) 96, 366
MaeIII GTNAC 2 cut(s) 92, 122
MalI GATC 1 cut(s) 194
MbiI CCGCTC 1 cut(s) 190
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 2 cut(s) 55, 286
MmeI TCCRAC 2 cut(s) 161, 263
MnlI CCTC 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 1 cut(s) 192
NlaIII CATG 4 cut(s) 63, 270, 317, 336
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 92, 122
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 239
PstI CTGCAG 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 173
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 266
SetI ASST 7 cut(s) 99, 119, 149, 175, 201, 349, 369
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 239
Sse9I AATT 2 cut(s) 55, 286
SsiI CCGC 1 cut(s) 190
SspMI CTAG 2 cut(s) 21, 380
TaiI ACGT 2 cut(s) 99, 369
TasI AATT 2 cut(s) 55, 286
TfiI GAWTC 1 cut(s) 297
TseFI GTSAC 2 cut(s) 92, 122
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 2 cut(s) 92, 122
TspDTI ATGAA 2 cut(s) 48, 97
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 55
XspI CTAG 2 cut(s) 21, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.