RchiOBHm_Chr4g0397411

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001399
Physical Location & Seq
Reverse (-)
13840270 .. 13840579
310 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36971

Sequence Viewer

Length: 225 bp
ATGATGTACAGGTCTGGATTTCAAGGGACGTGGAGTGCCTCTAGATGGGAAGTTGGGAGCTCTGTTGTCAGGATTGTATTCCACCGTTTGAACGGTCTCTTGGCTGTTGCGGCTGATGATTTAATTATCCGCTTGTTTGATGTTGTGGCATCAAGAATGGTTAGTAAATTTGAAGGCCATACTGATCGTGTTACAGACATGTGCTTTAGTGAGGATGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

74

Amino Acids

8.36

Weight (kDa)

6.71

Isoelectric Point (pI)

25.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC4_WD40 PF12894 2 - 71 2.1e-06 Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 13 - 74 1.1e-14 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 20 - 73 7.9e-08 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 20 - 73 9.8e-08 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 20 - 74 4.1e-06 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 24 - 73 2.8e-06 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 130
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 45
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 3 cut(s) 23, 91, 173
AjiI CACGTC 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 167
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 2 cut(s) 39, 209
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 30
BmsI GCATC 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 45
BshFI GGCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 62
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 6
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 2 cut(s) 110, 130
BspANI GGCC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 6
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 86, 95
BstAUI TGTACA 1 cut(s) 6
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 177
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 220
Csp6I GTAC 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 11, 46
CviAII CATG 1 cut(s) 199
CviJI RGCY 4 cut(s) 60, 104, 113, 177
CviKI_1 RGCY 4 cut(s) 60, 104, 113, 177
CviQI GTAC 1 cut(s) 7
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 1 cut(s) 202
FaiI YATR 2 cut(s) 180, 200
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 1 cut(s) 202
Hpy188III TCNNGA 4 cut(s) 15, 42, 70, 153
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 86, 95
HpyCH4IV ACGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 1 cut(s) 55
LweI GCATC 1 cut(s) 158
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 2 cut(s) 123, 167
MnlI CCTC 2 cut(s) 49, 205
MseI TTAA 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 202
NspI RCATGY 1 cut(s) 202
PciI ACATGT 1 cut(s) 198
PkrI GCNGC 1 cut(s) 112
PscI ACATGT 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 62
SetI ASST 3 cut(s) 14, 32, 62
SfaNI GCATC 1 cut(s) 158
Sse9I AATT 2 cut(s) 123, 167
SsiI CCGC 2 cut(s) 110, 130
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 62
TaaI ACNGT 2 cut(s) 86, 95
TaiI ACGT 1 cut(s) 32
TasI AATT 2 cut(s) 123, 167
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
XapI RAATTY 1 cut(s) 167
XbaI TCTAGA 1 cut(s) 41
XceI RCATGY 1 cut(s) 202
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.