Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

11171358 .. 11192102

Gene Structure 20745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGAAGCTGGTTGATCTCGGCGCAAGGGACGACGGGAGAGGAGGTACGTCTAAAGCGGTGGTGGAGGTGGCCAGCAGGTGGAGCAAGAAAGAAAAAAAGAAAACGAAGAAGAGAAAGTGTCGGTGCTAGGAGAGAGAGAAGAGTGAACAGCGAGAGGAGGAAAAAAATAAGGAAAAGAAAGAAAGAAGAGGCAATACCAAGAACCAAAGAGAGTATGGGAATCTTCGAACCCTTCGAAGCAATCGGCTACACCACCACCTCCGTCCCCTTCTCCGTTCGGCGCCTCGGCACTAAAGCCTTCGTCGCCGTCGGCGTCGGCAAAGCCTTCCAAATTTACAATGATCAACAAAGTAGAGAGCTTTCTCAACGTTATATAACAAAACGAGCGAAGAAACTCAGGGTGAAGGAAAGGATTCATTCTTATAATACTATGATTCATGGACTTGGTATGCAGTCATTTGGATGGAAAGAAACAATTGGACTTTTAAAAAAATGCAGAGGGGGAGGAGGAGGAGGGGGTGAAAGTAGTATAGGTGTGGAGAGGATAGTGTGGGGGAGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

188

Amino Acids

21.68

Weight (kDa)

11.5

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	80
AciI	CCGC	1 cut(s)	58
AclI	AACGTT	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	333
AcyI	GRCGYC	2 cut(s)	283, 315
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	80
AluBI	AGCT	2 cut(s)	9, 361
AluI	AGCT	2 cut(s)	9, 361
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	414
AspLEI	GCGC	2 cut(s)	25, 285
AsuHPI	GGTGA	2 cut(s)	415, 533
AsuII	TTCGAA	2 cut(s)	228, 237
BalI	TGGCCA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BccI	CCATC	1 cut(s)	459
BceAI	ACGGC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	343
BfaI	CTAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	284
Bpu14I	TTCGAA	2 cut(s)	228, 237
BsaHI	GRCGYC	2 cut(s)	283, 315
BsaJI	CCNNGG	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	412
BseRI	GAGGAG	5 cut(s)	56, 172, 522, 525, 528
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	43, 251
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmFI	GGGAC	2 cut(s)	43, 251
BsnI	GGCC	1 cut(s)	73
Bsp119I	TTCGAA	2 cut(s)	228, 237
Bsp143I	GATC	2 cut(s)	15, 343
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	68
BspT104I	TTCGAA	2 cut(s)	228, 237
BspT107I	GGYRCC	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	15, 343
BssNI	GRCGYC	2 cut(s)	283, 315
Bst6I	CTCTTC	3 cut(s)	106, 136, 183
BstACI	GRCGYC	2 cut(s)	283, 315
BstBI	TTCGAA	2 cut(s)	228, 237
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	470
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	25, 285
BstKTI	GATC	2 cut(s)	18, 346
BstMBI	GATC	2 cut(s)	15, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 305
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	470
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	2 cut(s)	25, 285
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	6 cut(s)	9, 73, 249, 299, 326, 361
CviKI_1	RGCY	6 cut(s)	9, 73, 249, 299, 326, 361
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	398
DinI	GGCGCC	1 cut(s)	284
DpnI	GATC	2 cut(s)	17, 345
DpnII	GATC	2 cut(s)	15, 343
DraI	TTTAAA	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	3 cut(s)	106, 136, 183
EarI	CTCTTC	3 cut(s)	106, 136, 183
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
FaeI	CATG	1 cut(s)	443
FaiI	YATR	8 cut(s)	218, 375, 377, 426, 434, 441, 452, 533
FaqI	GGGAC	2 cut(s)	43, 251
FatI	CATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	343
FokI	GGATG	1 cut(s)	477
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	24, 284
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	73
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	2 cut(s)	25, 285
Hin1I	GRCGYC	2 cut(s)	283, 315
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	2 cut(s)	23, 283
HinP1I	GCGC	2 cut(s)	23, 283
HinfI	GANTC	3 cut(s)	222, 415, 436
HphI	GGTGA	2 cut(s)	415, 533
Hpy166II	GTNNAC	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	4 cut(s)	37, 308, 314, 320
HpyAV	CCTTC	5 cut(s)	244, 280, 310, 337, 400
HpyCH4IV	ACGT	2 cut(s)	49, 370
HpyCH4V	TGCA	2 cut(s)	454, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 305
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	49, 370
Hsp92I	GRCGYC	2 cut(s)	283, 315
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	2 cut(s)	23, 283
KasI	GGCGCC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	15, 343
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	3 cut(s)	63, 87, 385
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	2 cut(s)	49, 370
MalI	GATC	2 cut(s)	17, 345
MboI	GATC	2 cut(s)	15, 343
MboII	GAAGA	6 cut(s)	120, 123, 153, 200, 217, 403
MfeI	CAATTG	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	2 cut(s)	333, 477
MluNI	TGGCCA	1 cut(s)	73
Mly113I	GGCGCC	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	2 cut(s)	488, 565
MslI	CAYNNNNRTG	1 cut(s)	463
Msp20I	TGGCCA	1 cut(s)	73
MunI	CAATTG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	83, 305
NarI	GGCGCC	1 cut(s)	283
NdeII	GATC	2 cut(s)	15, 343
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	284
NmeAIII	GCCGAG	1 cut(s)	267
NspV	TTCGAA	2 cut(s)	228, 237
PaqCI	CACCTGC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 312
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	222, 415, 436
PflMI	CCANNNNNTGG	1 cut(s)	80
PluTI	GGCGCC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	426
Psp1406I	AACGTT	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	284
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	463
SaqAI	TTAA	2 cut(s)	488, 565
Sau3AI	GATC	2 cut(s)	15, 343
SetI	ASST	9 cut(s)	11, 48, 52, 71, 82, 263, 363, 373, 538
SfoI	GGCGCC	1 cut(s)	284
SfuI	TTCGAA	2 cut(s)	228, 237
SmiMI	CAYNNNNRTG	1 cut(s)	463
Sse9I	AATT	2 cut(s)	333, 477
SsiI	CCGC	1 cut(s)	58
SspDI	GGCGCC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	129
TaiI	ACGT	2 cut(s)	52, 373
TaqI	TCGA	2 cut(s)	228, 237
TasI	AATT	2 cut(s)	333, 477
TfiI	GAWTC	3 cut(s)	222, 415, 436
Tru1I	TTAA	2 cut(s)	488, 565
Tru9I	TTAA	2 cut(s)	488, 565
TspDTI	ATGAA	2 cut(s)	407, 428
TspGWI	ACGGA	2 cut(s)	253, 265
Van91I	CCANNNNNTGG	1 cut(s)	80
XapI	RAATTY	1 cut(s)	333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.