Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001548.1

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

64102 .. 65483

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001548.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgttgtggcatcaagaagggttcgtaaatttgaaggccatactgatcgtgttacagacatgtgttttagtgaggatggaaaatggcttttgtcttccggtatggatggaagtcttcgatgcattgcatgttgatgagtctgtgacggcactgtctctatcaccgaatatggatattttagcgacctcccataaaatggggtctatctttggtaagtcttcacatatgtggaattccaagacaattaaacaaagagtgaaacttcattgggatgttgaagttgaagttgctgaggattctgaggagccgcctgtcggaaactttgcacaacttaaagattcttctgctcttccaactcttgaacgaaataaaccgattgagcccccaaagaaacccgaaaaggctcctttctttttgccttcagttccgtctctttcaggggaaataatgtttaagcctactggaaaaggtgatgaagaatcatctagaataaagactgctctggcaccatcaatattccttcaagcgcttcagtcatctgcagaaatgaagaatttttcagaatttgctgatttcatcaaaactttggctccatcatccctggatatggaacttcgaattcttcagattgtaggcgatgaggatgaagagccagaaaagttgcttccatttgaactgcttctcgactattttatacacgagactgcatgcagaaaattttttgactttgtgcaagctgtgatcagggtttttctgaaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

254

Amino Acids

28.71

Weight (kDa)

5.08

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	1 cut(s)	308
AcsI	RAATTY	6 cut(s)	28, 232, 553, 563, 618, 716
AcuI	CTGAAG	3 cut(s)	405, 515, 608
AfeI	AGCGCT	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	196, 314, 607
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	6 cut(s)	34, 278, 284, 362, 524, 674
AjnI	CCWGG	1 cut(s)	600
AleI	CACNNNNGTG	1 cut(s)	226
AluBI	AGCT	1 cut(s)	737
AluI	AGCT	1 cut(s)	737
Alw26I	GTCTC	3 cut(s)	159, 435, 695
Aor51HI	AGCGCT	1 cut(s)	528
AoxI	GGCC	1 cut(s)	36
ApoI	RAATTY	6 cut(s)	28, 232, 553, 563, 618, 716
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	153, 482
AsuII	TTCGAA	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	1 cut(s)	698
BbsI	GAAGAC	3 cut(s)	86, 106, 210
BbvCI	CCTCAGC	1 cut(s)	291
BccI	CCATC	4 cut(s)	70, 100, 517, 601
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	602
BclI	TGATCA	1 cut(s)	741
BcoDI	GTCTC	3 cut(s)	159, 435, 695
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	530
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	602
BmiI	GGNNCC	4 cut(s)	306, 405, 507, 591
BmrFI	CCNGG	1 cut(s)	602
BmsI	GCATC	2 cut(s)	19, 109
BpiI	GAAGAC	3 cut(s)	86, 106, 210
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 314, 607
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	5 cut(s)	81, 111, 277, 596, 649
BseLI	CCNNNNNNNGG	3 cut(s)	196, 314, 607
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	282, 291
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	196, 314, 607
BsmAI	GTCTC	3 cut(s)	159, 435, 695
BsmBI	CGTCTC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	45, 741
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	283, 292
BspLI	GGNNCC	4 cut(s)	306, 405, 507, 591
BspMAI	CTGCAG	1 cut(s)	544
BspQI	GCTCTTC	2 cut(s)	354, 642
BspT104I	TTCGAA	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	2 cut(s)	45, 741
BssSI	CACGAG	1 cut(s)	698
Bst2BI	CACGAG	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	2 cut(s)	354, 642
BstBI	TTCGAA	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	709, 735
BstDEI	CTNAG	2 cut(s)	291, 300
BstF5I	GGATG	5 cut(s)	81, 111, 277, 596, 649
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	2 cut(s)	48, 744
BstMAI	GTCTC	3 cut(s)	159, 435, 695
BstMBI	GATC	2 cut(s)	45, 741
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	3 cut(s)	63, 131, 711
BstSCI	CCNGG	1 cut(s)	600
BstSFI	CTRYAG	1 cut(s)	540
BstV2I	GAAGAC	3 cut(s)	86, 106, 210
BsuRI	GGCC	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	5 cut(s)	81, 111, 277, 596, 649
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	709, 735
CfoI	GCGC	1 cut(s)	529
CviAII	CATG	3 cut(s)	60, 128, 708
CviJI	RGCY	9 cut(s)	38, 87, 307, 382, 404, 457, 590, 652, 737
CviKI_1	RGCY	9 cut(s)	38, 87, 307, 382, 404, 457, 590, 652, 737
DdeI	CTNAG	2 cut(s)	291, 300
DpnI	GATC	2 cut(s)	47, 743
DpnII	GATC	2 cut(s)	45, 741
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	354, 642
EarI	CTCTTC	2 cut(s)	354, 642
Eco24I	GRGCYC	1 cut(s)	384
Eco47III	AGCGCT	1 cut(s)	528
Eco57I	CTGAAG	3 cut(s)	405, 515, 608
EcoRI	GAATTC	2 cut(s)	232, 618
EcoRII	CCWGG	1 cut(s)	600
EcoT22I	ATGCAT	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	3 cut(s)	63, 131, 711
FatI	CATG	3 cut(s)	59, 127, 707
FauNDI	CATATG	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	741
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	5 cut(s)	88, 118, 284, 583, 656
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	3 cut(s)	63, 131, 711
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	4 cut(s)	137, 296, 338, 479
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	153, 482
Hpy188I	TCNGA	5 cut(s)	301, 317, 562, 627, 756
Hpy188III	TCNNGA	4 cut(s)	14, 359, 486, 683
HpyAV	CCTTC	5 cut(s)	11, 28, 429, 530, 751
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	7 cut(s)	122, 127, 326, 542, 707, 711, 733
HpyF3I	CTNAG	2 cut(s)	291, 300
Hsp92II	CATG	3 cut(s)	63, 131, 711
HspAI	GCGC	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	2 cut(s)	45, 741
LguI	GCTCTTC	2 cut(s)	354, 642
LmnI	GCTCC	3 cut(s)	304, 409, 595
LpnPI	CCDG	9 cut(s)	111, 324, 423, 447, 488, 587, 614, 666, 730
LweI	GCATC	2 cut(s)	19, 109
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	51, 142
MalI	GATC	2 cut(s)	47, 743
MboI	GATC	2 cut(s)	45, 741
MboII	GAAGA	9 cut(s)	86, 106, 210, 333, 341, 488, 562, 614, 659
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	7 cut(s)	28, 232, 243, 553, 563, 618, 716
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	295, 377
MnlI	CCTC	5 cut(s)	66, 196, 286, 295, 634
Mph1103I	ATGCAT	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	3 cut(s)	246, 333, 453
MslI	CAYNNNNRTG	3 cut(s)	132, 226, 270
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	2 cut(s)	45, 741
NlaIII	CATG	3 cut(s)	63, 131, 711
NlaIV	GGNNCC	4 cut(s)	306, 405, 507, 591
NmuCI	GTSAC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	3 cut(s)	63, 131, 711
NspV	TTCGAA	1 cut(s)	616
OliI	CACNNNNGTG	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	711
PciI	ACATGT	1 cut(s)	59
PciSI	GCTCTTC	2 cut(s)	354, 642
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	3 cut(s)	296, 338, 479
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PscI	ACATGT	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	4 cut(s)	306, 405, 507, 591
PstI	CTGCAG	1 cut(s)	544
RseI	CAYNNNNRTG	3 cut(s)	132, 226, 270
SapI	GCTCTTC	2 cut(s)	354, 642
SaqAI	TTAA	3 cut(s)	246, 333, 453
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	45, 741
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	4 cut(s)	188, 472, 739, 762
SfaNI	GCATC	2 cut(s)	19, 109
SfcI	CTRYAG	1 cut(s)	540
SfuI	TTCGAA	1 cut(s)	616
SmiMI	CAYNNNNRTG	3 cut(s)	132, 226, 270
SphI	GCATGC	1 cut(s)	711
Sse9I	AATT	7 cut(s)	28, 232, 243, 553, 563, 618, 716
SsiI	CCGC	1 cut(s)	308
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	117, 616, 684
TasI	AATT	7 cut(s)	28, 232, 243, 553, 563, 618, 716
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	3 cut(s)	296, 338, 479
Tru1I	TTAA	3 cut(s)	246, 333, 453
Tru9I	TTAA	3 cut(s)	246, 333, 453
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	5 cut(s)	254, 489, 563, 565, 660
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	196
XapI	RAATTY	6 cut(s)	28, 232, 553, 563, 618, 716
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	3 cut(s)	63, 131, 711
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	1 cut(s)	486
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.