Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001548.1

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

149922 .. 151308

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001548.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgaatgggttcggagcttggggctccgaaagcgctcggtcttaccagtcaataatcattctctcctcgattcatcctcccaaaaccttccgaagaacccaaagcaataccaagaaccaaagaaagtatgggaatcttcgaaccttcagagcgatcggctacacaaccccctccgtccccttctccgttcagcgcctcggcactgaagccttcgtaaccgtcagcgtcggcaaagccttccaaatttacaattgcgcaaatctcactctggtcctcgtcggtccgcaattgccgaagaagattcgagctcttgcttcgtacctggactacacattcgctgcgtatgggactgatatagctgtttttaagcgatctcatcaggttgatctgctattatgtagagggcattttggaaattttagggaggcatttgcattcgttctgttgggaaccttggacggacataacttctttatgtggacatttacaggtcgctacgtggagcatatcccaagtgttgatgttgaaggtaatctgtatatatggacatttaaaggaattgatgagaatcttgatctggttggacatattaagttggacgaaaattttactcctacctgtataatgcatccggatacctacttaaataaggttctctgcagctttggaatatcagcacaaagaaaaaactttatgatttcaagggatggaaatcttctatttgcagctgtgtttagtctcctgcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

249

Amino Acids

28.11

Weight (kDa)

9.39

Isoelectric Point (pI)

22.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	256
AccIII	TCCGGA	1 cut(s)	631
AciI	CCGC	1 cut(s)	284
AcsI	RAATTY	3 cut(s)	243, 415, 604
AcuI	CTGAAG	2 cut(s)	130, 225
AfaI	GTAC	1 cut(s)	320
AfeI	AGCGCT	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	527, 702
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	5 cut(s)	17, 308, 359, 663, 728
AluI	AGCT	5 cut(s)	17, 308, 359, 663, 728
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	743
Aor13HI	TCCGGA	1 cut(s)	631
Aor51HI	AGCGCT	1 cut(s)	34
ApeKI	GCWGC	3 cut(s)	338, 660, 725
ApoI	RAATTY	3 cut(s)	243, 415, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	35, 195, 257
AspS9I	GGNCC	2 cut(s)	271, 281
AsuII	TTCGAA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	271, 281
BanII	GRGCYC	2 cut(s)	26, 310
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	325, 672, 737
BccI	CCATC	1 cut(s)	701
BciT130I	CCWGG	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	1 cut(s)	748
BfmI	CTRYAG	1 cut(s)	658
BfoI	RGCGCY	2 cut(s)	36, 196
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	3 cut(s)	339, 661, 726
BlsI	GCNGC	3 cut(s)	340, 662, 727
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	271, 281
BmgT120I	GGNCC	2 cut(s)	271, 281
BmiI	GGNNCC	2 cut(s)	25, 451
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	637
Bpu14I	TTCGAA	1 cut(s)	139
BsaAI	YACGTR	1 cut(s)	499
BsaBI	GATNNNNATC	2 cut(s)	567, 711
BsaJI	CCNNGG	2 cut(s)	196, 453
BsaWI	WCCGGW	1 cut(s)	631
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	2 cut(s)	567, 711
BseAI	TCCGGA	1 cut(s)	631
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	196, 453
BseGI	GGATG	3 cut(s)	73, 628, 712
BseJI	GATNNNNATC	2 cut(s)	567, 711
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	325, 672, 737
BsgI	GTGCAG	1 cut(s)	728
Bsh1285I	CGRYCG	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	161, 361
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	2 cut(s)	161, 361
BsmI	GAATGC	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	26, 310
Bsp13I	TCCGGA	1 cut(s)	631
Bsp143I	GATC	4 cut(s)	153, 371, 385, 574
BspACI	CCGC	1 cut(s)	284
BspEI	TCCGGA	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	25, 451
BspMAI	CTGCAG	1 cut(s)	662
BspT104I	TTCGAA	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	196, 453
BssMI	GATC	4 cut(s)	153, 371, 385, 574
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	139
BstF5I	GGATG	3 cut(s)	73, 628, 712
BstH2I	RGCGCY	2 cut(s)	36, 196
BstHHI	GCGC	3 cut(s)	35, 195, 257
BstKTI	GATC	4 cut(s)	156, 374, 388, 577
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	4 cut(s)	153, 371, 385, 574
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	658
BstV1I	GCAGC	3 cut(s)	325, 672, 737
BsuI	GTATCC	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	73, 628, 712
BtsIMutI	CAGTG	1 cut(s)	201
CfoI	GCGC	3 cut(s)	35, 195, 257
Cfr13I	GGNCC	2 cut(s)	271, 281
CpoI	CGGWCCG	1 cut(s)	281
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	319
CspI	CGGWCCG	1 cut(s)	281
CviJI	RGCY	9 cut(s)	17, 24, 159, 209, 236, 308, 359, 663, 728
CviKI_1	RGCY	9 cut(s)	17, 24, 159, 209, 236, 308, 359, 663, 728
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	4 cut(s)	155, 373, 387, 576
DpnII	GATC	4 cut(s)	153, 371, 385, 574
DraI	TTTAAA	1 cut(s)	553
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	2 cut(s)	26, 310
Eco47I	GGWCC	2 cut(s)	271, 281
Eco47III	AGCGCT	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	308
Eco57I	CTGAAG	2 cut(s)	130, 225
EcoICRI	GAGCTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	630
EcoT38I	GRGCYC	2 cut(s)	26, 310
ErhI	CCWWGG	1 cut(s)	453
FaqI	GGGAC	2 cut(s)	161, 361
Fnu4HI	GCNGC	3 cut(s)	339, 661, 726
FokI	GGATG	3 cut(s)	60, 615, 719
FriOI	GRGCYC	2 cut(s)	26, 310
Fsp4HI	GCNGC	3 cut(s)	339, 661, 726
FspBI	CTAG	1 cut(s)	748
FspI	TGCGCA	1 cut(s)	256
GlaI	GCGC	3 cut(s)	34, 194, 256
GluI	GCNGC	3 cut(s)	339, 661, 726
HaeII	RGCGCY	2 cut(s)	36, 196
HapII	CCGG	1 cut(s)	632
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	3 cut(s)	35, 195, 257
Hin6I	GCGC	3 cut(s)	33, 193, 255
HinP1I	GCGC	3 cut(s)	33, 193, 255
HinfI	GANTC	4 cut(s)	70, 133, 301, 568
HpaII	CCGG	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	4 cut(s)	14, 28, 92, 149
Hpy188III	TCNNGA	2 cut(s)	572, 632
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	2 cut(s)	230, 281
HpyAV	CCTTC	6 cut(s)	97, 154, 190, 220, 247, 521
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	5 cut(s)	434, 628, 660, 725, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	498
HspAI	GCGC	3 cut(s)	33, 193, 255
Kpn2I	TCCGGA	1 cut(s)	631
Kzo9I	GATC	4 cut(s)	153, 371, 385, 574
LmnI	GCTCC	3 cut(s)	14, 29, 502
LpnPI	CCDG	9 cut(s)	59, 254, 308, 335, 365, 474, 563, 631, 645
Lsp1109I	GCAGC	3 cut(s)	325, 672, 737
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	748
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	155, 373, 387, 576
MboI	GATC	4 cut(s)	153, 371, 385, 574
MboII	GAAGA	5 cut(s)	105, 128, 307, 310, 707
MfeI	CAATTG	2 cut(s)	250, 287
MhlI	GDGCHC	2 cut(s)	26, 310
MluCI	AATT	6 cut(s)	243, 250, 287, 415, 558, 604
MmeI	TCCRAC	2 cut(s)	562, 576
MnlI	CCTC	7 cut(s)	76, 87, 181, 206, 284, 395, 418
Mph1103I	ATGCAT	1 cut(s)	630
MroI	TCCGGA	1 cut(s)	631
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	366, 552, 591, 644
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	323
MunI	CAATTG	2 cut(s)	250, 287
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	4 cut(s)	153, 371, 385, 574
NlaIV	GGNNCC	2 cut(s)	25, 451
NmeAIII	GCCGAG	1 cut(s)	177
NsbI	TGCGCA	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	630
NspV	TTCGAA	1 cut(s)	139
PctI	GAATGC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	4 cut(s)	70, 133, 301, 568
PkrI	GCNGC	3 cut(s)	340, 662, 727
Ple19I	CGATCG	1 cut(s)	156
Ppu21I	YACGTR	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	25, 451
PspPI	GGNCC	2 cut(s)	271, 281
PstI	CTGCAG	1 cut(s)	662
PvuI	CGATCG	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
Rsr2I	CGGWCCG	1 cut(s)	281
RsrII	CGGWCCG	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	4 cut(s)	366, 552, 591, 644
SatI	GCNGC	3 cut(s)	339, 661, 726
Sau3AI	GATC	4 cut(s)	153, 371, 385, 574
Sau96I	GGNCC	2 cut(s)	271, 281
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	26, 310
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	658
SfuI	TTCGAA	1 cut(s)	139
SinI	GGWCC	2 cut(s)	271, 281
Sse9I	AATT	6 cut(s)	243, 250, 287, 415, 558, 604
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	748
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	68, 139, 304
TaqII	GACCGA	2 cut(s)	27, 269
TasI	AATT	6 cut(s)	243, 250, 287, 415, 558, 604
TfiI	GAWTC	4 cut(s)	70, 133, 301, 568
Tru1I	TTAA	4 cut(s)	366, 552, 591, 644
Tru9I	TTAA	4 cut(s)	366, 552, 591, 644
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	3 cut(s)	338, 660, 725
TspDTI	ATGAA	2 cut(s)	17, 62
TspGWI	ACGGA	3 cut(s)	163, 175, 474
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	271, 281
XapI	RAATTY	3 cut(s)	243, 415, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	748
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.