Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

66862978 .. 66865353

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG463100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCAATTTCAGCTATTGTTGTTTTGCTCCACGATTCAAGGTCCGCAATTGCCGAAGAAGATTCGAACTCTTGCTTCGTACCGGAACTACACATTCGCTGCGTATGGGACTGATATAGCTGTTTTTAAGAGATCTCATCAGGTCGCTACGTGGAACAGCCATAATGCAAAGTATAAATTAACCTCAAACTCTTTCCTCAATAAAGTTCAGATGTGGATTTTTGACACAAGTGATGGAGATGCTCGTCTTTTACACAAGTGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

88

Amino Acids

10.25

Weight (kDa)

9.93

Isoelectric Point (pI)

21.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	13 - 57	2.2e-06	WDR36/Utp21 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	2 cut(s)	13, 119
AluI	AGCT	2 cut(s)	13, 119
ApeKI	GCWGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	41
AsuII	TTCGAA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmsI	GCATC	1 cut(s)	229
Bpu14I	TTCGAA	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	64
BssMI	GATC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	64
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	79
CviJI	RGCY	3 cut(s)	13, 119, 159
CviKI_1	RGCY	3 cut(s)	13, 119, 159
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	41
FaiI	YATR	5 cut(s)	105, 116, 162, 174, 265
FaqI	GGGAC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HapII	CCGG	1 cut(s)	82
HinfI	GANTC	2 cut(s)	34, 61
HpaII	CCGG	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	4, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	2 cut(s)	95, 125
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	229
MaeII	ACGT	1 cut(s)	149
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	2 cut(s)	67, 70
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	3 cut(s)	5, 47, 176
MnlI	CCTC	2 cut(s)	193, 206
MseI	TTAA	2 cut(s)	126, 179
MspI	CCGG	1 cut(s)	82
MunI	CAATTG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	34, 61
PkrI	GCNGC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	126, 179
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	41
SetI	ASST	6 cut(s)	15, 43, 121, 144, 152, 185
SfaNI	GCATC	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	64
SgeI	CNNG	8 cut(s)	43, 50, 83, 94, 152, 162, 240, 255
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	3 cut(s)	5, 47, 176
SsiI	CCGC	1 cut(s)	44
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	64
TasI	AATT	3 cut(s)	5, 47, 176
TfiI	GAWTC	2 cut(s)	34, 61
Tru1I	TTAA	2 cut(s)	126, 179
Tru9I	TTAA	2 cut(s)	126, 179
TseI	GCWGC	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.