MD16G1237800.v1.1

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0001399
Physical Location & Seq
Reverse (-)
25058454 .. 25068003
9550 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1237800.v1.1.491

Sequence Viewer

Length: 2715 bp
ATGGGAATATTCGAGCCGTTCAGAGCAATCGGCTACACAACCAGCTCCGTCCCCTTCTCTGTTCAGCGGCTCGGCACCGAAACCTTCGTCACTGTCTCCGTCGGCAAGGCTTTCCAGATTTACAACTGCGCAAAGCTCAGTCTCGTCCTCGTTGGTCCACAATTGCCGAAGAAGATTCGAGCTCTTGCTTGCTACCGTGATTATACATTTGCTGCATATGGGAATGAGATAGCCGTTTTTAAACGAGCTCATCAGGTAGCAACATGGTGCAGCCATAGTACCAAGGTCAATTCGTTGCTATTGTTTGGAGAGCATATCCTAAGTGTTGATGTTGAAGGTCATCTGTTTATATGGGCATTCAAAGGAATTGATGAGAACCATTCTCCGATTGGACATGTTATGTTAGACAACAACTTTAGTCCTAGCTGTATAATGCATCCGGATACCTACCTAAATAAGATTATTATTGGGAGTCAGGAAGGTTCACTTCAACTTTGGAACATCAGTGCAAAGAAAAAACTATATGAGTTCAAGGGATGGAATTCTTCTATCTGCAGTTGTGTTTCATCTCCTGCACTAGATGTTATTGCAGTTGGTTGTGCTGATGGAAACATTCATGTTCATAACATTCGTTATGATGAAGAGCTAGTCACATTTTCTCATTCAACACGAGGTGCTGTGACTGCCTTATCTTTCAGCACAGATGGGCAGCCTCTACTAGCATCTGGAGGTTCTTCAGGTGTCATAAGCATATGGAATCTTGAAAAAAGAAGGCTTCAATCAGTAATAAGAGATGCACATGATGGTTCTGTACTTTCACTTCACTTTCTTGTGAATGAACCCGTGCTAATGAGTTCATCATCTGACAATTCCATCAAAATGTGGATTTTTGACACAACTGATGGAGATCCTCGACTTTTACGCTTCAGAAGTGGTCATAGTGCTCCTCCACAATGCATAAGGTTTTATGCGAATGGGAGACACATTCTATCAGCTGGTCAGGACCGTGCATTTCGCCTTTTCTCTGTAATACAGGATCAGCAAAGTAGAGAGCTTTCTCAGCGTCACATATCCAAACGAGCAAAGAAACTGAAGATGAAGGAAGAAGAGATAAAACTGAAGCCTGTCATCGCTTTTGATTGTGCTGAAATAAGAGAGCGAGATTGGTGCAATGTGGTTACATGCCATATGGATACTGCACAGGCATATGTATGGAGACTTCAAAACTTTGTTCTTGGTGAGCATATTCTGAAGCCAAGACCTGAAAACCCTACACCAGTGAAGGCTTGTGCCATCAGTGCATGTGGCAATTTTGCCATACTAGGGACAGCGGATGGTTGGGTTGAGCGGTTCAACCTCCAATCAGGAATCAGTCGAGGCAGTTACAGAGACACGTCAGAAAGAGGGAGCTTTGCCCATGATGGGGAAGTGGTTGGAATTGCTTGTGATTCAACAAATACTGTAATGATAAGTGCAGGATATCATGGAGACATAAAGGTTTGGAATTTCAAGGGACGTGATGTAAAATCTAGATGGGAAGTTGGGTGCTCCGTTGTCAAGATTGTATACAATCGTTTGAATGGTCTTCTGGCTGTTGTGGCTGATGACTTAATCATCCGTTTGTTTGATGTTGTGGCATCAAGAATGGTTCGTAAATTTGAAGGTCATATGGATCGTATTACAGATATGTGTTTTAGTGAGGATGGAAAATGGCTTTTGTCATCAAGTATGGATGGAAGTCTTCGAGTCTGGGATGTTATTTTAGCAAGACAAATAGATGCGTTGCATGTTGACGTAGCTATAACAGCATTGTCTCTGTCACCGAATATGGATGTTCTAGCGACTGCGCATGTTGACCAAAATGGGGTCTATCTTTGGGTAAACCAATCGATGTTTTCTGGAGCTTCAAAAGTCGATTCTTATGCAAGTGGAAAGGAAGTTAGGAATGTTAAGTTGCCATCTATCTCTTCAACAAAAGGTTCTCTAGAGGAGGACTCTGACGAGCCTATTGTGGACCATCCGGAATCCAAAGATGCTCCTGCTTTTACTACTCTTGACCTTCAAATTCCCGATCTTGTTACTCTCTCATTATTGCCTAAAAGCCAGTGGCAAAGCTTAATCAATTTAGACACTATAAAGGAACGGAATAAACCAATTGAACCACCAAAAAAACCGGAAAGGGCTCCTTTCTTTTTGCCTTCAATTCCCTCTTTTTCAGGAGAAATATTATTTACGGGATTAGAAAACGAGGAGGCGAAAGGTGATGACGTAGAACACACTAGAATAAAGTCTGGTCTGGCACCATCACAATTCTTGCAACATCTTCAGTCATCTGCAGAAATGAAGAATTTTTCAGCATTTACTGATTATATTAAAAGTTTGTCTCCATCGACTCTGGACATGGAGCTTCGAATGCTTCAGATTGTTGATGATGAGGATGAGGAAGAACTTGAAAGCCGCCCAGAATTACTTTCAATCGAACTGCTCCTTGATTATTTTATACATGAGACTTGGTGCAGAAACAATTTTGACTTTGTACAAGCTGTAATCAAGGTGTTTCTGAAGATCCACGGCGAAACAATTCGGTGCCAATCAAGACTGCAGGACAAGGCAAGGGAGCTCCTAGATATTCAATGCAAAACATGGCAAAGAGTAGAAAAATTGTTTCAAAGTACCAGCTGCGTTGTCGCATTTCTTAGCAATTCACGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

905

Amino Acids

101.34

Weight (kDa)

6.16

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_1st PF25171 30 - 298 7.2e-100 WDR36/Utp21 first beta-propeller
Beta-prop_RIG_2nd PF23775 126 - 287 1.6e-07 RIG second beta-propeller
WD40_Gbeta PF25391 145 - 242 9e-08 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 145 - 295 1.1e-16 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 146 - 299 6.2e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 148 - 259 1e-05 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 151 - 264 9e-15 CDC20/Fizzy WD40 domain
WDR55 PF24796 152 - 253 6.7e-07 WDR55
Beta-prop_WDR3_2nd PF25172 152 - 258 7.2e-06 WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 152 - 260 6e-12 WDR90/POC16, second beta-propeller
Beta-prop_WDR5 PF25175 152 - 298 3.5e-17 WDR5 beta-propeller domain
Beta-prop_HPS5 PF23756 153 - 266 1.4e-07 HPS5 beta-propeller
Beta-prop_THOC3 PF25174 153 - 258 1.3e-10 THOC3 beta-propeller domain
WDR90_beta-prop_4th PF23342 155 - 273 4.5e-08 WDR90, 4th beta-propeller
Beta-prop_WDR3_1st PF25173 156 - 343 1.2e-24 WDR3 first beta-propeller domain
Beta-prop_EML PF23409 157 - 296 5.4e-15 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin PF25460 176 - 343 9.4e-07 Aladin seven-bladed propeller
WDR55 PF24796 183 - 295 4.5e-10 WDR55
Beta-prop_VPS8 PF23410 194 - 290 5.1e-08 Vps8 beta-propeller
WD40_MABP1-WDR62_2nd PF24782 223 - 370 4.1e-10 MABP1/WDR62 second WD40 domain
Beta-prop_THOC3 PF25174 225 - 298 7e-09 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 225 - 300 3.7e-06 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 227 - 343 3.5e-09 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 239 - 360 2.9e-13 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 239 - 346 2.2e-07 TEP-1 second beta-propeller
WD40_Gbeta PF25391 248 - 353 3.5e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 319 - 636 7.8e-105 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 423 - 619 1.1e-13 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 426 - 626 4.5e-19 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 430 - 616 1.8e-15 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 473 - 621 2.3e-19 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 478 - 588 9.3e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 482 - 585 4.5e-06 MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz PF24807 488 - 631 9.8e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 489 - 616 2.8e-07 WDR90/POC16, second beta-propeller
WDR55 PF24796 490 - 586 3.4e-06 WDR55
WD40_WDHD1_1st PF24817 518 - 593 4.1e-10 WDHD1 first WD40 domain
WD40 PF00400 549 - 585 8.6e-11 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 550 - 621 3.5e-07 CAF1B/HIR1 beta-propeller domain
Utp21 PF04192 690 - 900 5.5e-54 Utp21 specific WD40 associated putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 130, 1848
AccB1I GGYRCC 3 cut(s) 74, 2299, 2586
AccBSI CCGCTC 1 cut(s) 1348
AccI GTMKAC 1 cut(s) 1566
AccIII TCCGGA 2 cut(s) 439, 2020
AciI CCGC 4 cut(s) 67, 1331, 1348, 2458
AclWI GGATC 4 cut(s) 902, 1044, 1680, 2560
AcsI RAATTY 5 cut(s) 541, 1504, 1655, 2064, 2347
AcuI CTGAAG 8 cut(s) 720, 910, 1112, 1139, 1271, 2309, 2402, 2582
AdeI CACNNNGTG 1 cut(s) 674
AfaI GTAC 4 cut(s) 280, 813, 2538, 2674
AfiI CCNNNNNNNGG 4 cut(s) 1323, 1422, 1423, 1864
AflIII ACRYGT 2 cut(s) 394, 1392
AjiI CACGTC 2 cut(s) 1395, 1517
Alw21I GWGCWC 5 cut(s) 184, 250, 946, 1550, 2622
Alw26I GTCTC 9 cut(s) 100, 146, 973, 1210, 1383, 1482, 1818, 2388, 2501
AlwI GGATC 4 cut(s) 902, 1044, 1680, 2560
Aor13HI TCCGGA 2 cut(s) 439, 2020
ApeKI GCWGC 4 cut(s) 212, 270, 709, 2679
ApoI RAATTY 5 cut(s) 541, 1504, 1655, 2064, 2347
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp700I GAANNNNTTC 1 cut(s) 2580
AspLEI GCGC 2 cut(s) 131, 1849
AspS9I GGNCC 3 cut(s) 155, 1003, 2014
AsuHPI GGTGA 3 cut(s) 1250, 1812, 2273
AsuII TTCGAA 1 cut(s) 2410
AvaII GGWCC 3 cut(s) 155, 1003, 2014
BanI GGYRCC 3 cut(s) 74, 2299, 2586
BanII GRGCYC 4 cut(s) 184, 250, 2185, 2622
BarI GAAGNNNNNNTAC 4 cut(s) 804, 836, 1203, 1235
BauI CACGAG 1 cut(s) 669
BbsI GAAGAC 2 cut(s) 1577, 1733
Bbv12I GWGCWC 5 cut(s) 184, 250, 946, 1550, 2622
BbvI GCAGC 4 cut(s) 199, 282, 721, 2666
BceAI ACGGC 2 cut(s) 218, 2587
BcgI CGANNNNNNTGC 4 cut(s) 1149, 1183, 1904, 1938
BciVI GTATCC 2 cut(s) 436, 1186
BcoDI GTCTC 9 cut(s) 100, 146, 973, 1210, 1383, 1482, 1818, 2388, 2501
BfmI CTRYAG 3 cut(s) 553, 2334, 2600
BfuI GTATCC 2 cut(s) 436, 1186
BisI GCNGC 6 cut(s) 68, 213, 271, 710, 2458, 2680
BlsI GCNGC 6 cut(s) 69, 214, 272, 711, 2459, 2681
Bme18I GGWCC 3 cut(s) 155, 1003, 2014
BmgBI CACGTC 2 cut(s) 1395, 1517
BmgT120I GGNCC 3 cut(s) 155, 1003, 2014
BmiI GGNNCC 4 cut(s) 76, 2184, 2301, 2588
BmsI GCATC 6 cut(s) 445, 731, 784, 1646, 1768, 2023
BpiI GAAGAC 2 cut(s) 1577, 1733
BplI GAGNNNNNCTC 2 cut(s) 1979, 2011
BpmI CTGGAG 2 cut(s) 747, 1920
Bpu14I TTCGAA 1 cut(s) 2410
Bsa29I ATCGAT 1 cut(s) 1889
BsaBI GATNNNNATC 1 cut(s) 906
BsaJI CCNNGG 2 cut(s) 282, 2569
BsaWI WCCGGW 3 cut(s) 439, 2020, 2173
Bsc4I CCNNNNNNNGG 4 cut(s) 1323, 1422, 1423, 1864
Bse1I ACTGG 2 cut(s) 1277, 2104
Bse3DI GCAATG 1 cut(s) 1177
Bse8I GATNNNNATC 1 cut(s) 906
BseAI TCCGGA 2 cut(s) 439, 2020
BseCI ATCGAT 1 cut(s) 1889
BseDI CCNNGG 2 cut(s) 282, 2569
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 4 cut(s) 1323, 1422, 1423, 1864
BseMI GCAATG 1 cut(s) 1177
BseMII CTCAG 2 cut(s) 151, 1073
BseNI ACTGG 2 cut(s) 1277, 2104
BseRI GAGGAG 3 cut(s) 936, 2003, 2264
BseXI GCAGC 4 cut(s) 199, 282, 721, 2666
BsgI GTGCAG 5 cut(s) 289, 558, 1182, 1494, 2536
BshNI GGYRCC 3 cut(s) 74, 2299, 2586
BshVI ATCGAT 1 cut(s) 1889
BsiHKAI GWGCWC 5 cut(s) 184, 250, 946, 1550, 2622
BsiSI CCGG 3 cut(s) 440, 2021, 2174
BslFI GGGAC 3 cut(s) 35, 1339, 1527
BslI CCNNNNNNNGG 4 cut(s) 1323, 1422, 1423, 1864
BsmAI GTCTC 9 cut(s) 100, 146, 973, 1210, 1383, 1482, 1818, 2388, 2501
BsmFI GGGAC 3 cut(s) 35, 1339, 1527
BsmI GAATGC 2 cut(s) 356, 2418
Bsp119I TTCGAA 1 cut(s) 2410
Bsp1286I GDGCHC 6 cut(s) 184, 250, 946, 1550, 2185, 2622
Bsp13I TCCGGA 2 cut(s) 439, 2020
Bsp1407I TGTACA 1 cut(s) 2536
Bsp143I GATC 5 cut(s) 907, 1036, 1672, 2071, 2565
BspACI CCGC 4 cut(s) 67, 1331, 1348, 2458
BspCNI CTCAG 2 cut(s) 150, 1072
BspDI ATCGAT 1 cut(s) 1889
BspEI TCCGGA 2 cut(s) 439, 2020
BspLI GGNNCC 4 cut(s) 76, 2184, 2301, 2588
BspMAI CTGCAG 3 cut(s) 557, 2338, 2604
BspPI GGATC 4 cut(s) 902, 1044, 1680, 2560
BspQI GCTCTTC 1 cut(s) 636
BspT104I TTCGAA 1 cut(s) 2410
BspT107I GGYRCC 3 cut(s) 74, 2299, 2586
BsrBI CCGCTC 1 cut(s) 1348
BsrDI GCAATG 1 cut(s) 1177
BsrGI TGTACA 1 cut(s) 2536
BsrI ACTGG 2 cut(s) 1277, 2104
BssECI CCNNGG 2 cut(s) 282, 2569
BssMI GATC 5 cut(s) 907, 1036, 1672, 2071, 2565
BssNAI GTATAC 1 cut(s) 1567
BssSI CACGAG 1 cut(s) 669
BssT1I CCWWGG 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 1567
Bst2BI CACGAG 1 cut(s) 669
Bst4CI ACNGT 5 cut(s) 94, 197, 1007, 1462, 2709
Bst6I CTCTTC 3 cut(s) 636, 1101, 1972
BstAUI TGTACA 1 cut(s) 2536
BstBI TTCGAA 1 cut(s) 2410
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 4 cut(s) 137, 320, 1059, 2696
BstDSI CCRYGG 1 cut(s) 2569
BstHHI GCGC 2 cut(s) 131, 1849
BstKTI GATC 5 cut(s) 910, 1039, 1675, 2074, 2568
BstMAI GTCTC 9 cut(s) 100, 146, 973, 1210, 1383, 1482, 1818, 2388, 2501
BstMBI GATC 5 cut(s) 907, 1036, 1672, 2071, 2565
BstMWI GCNNNNNNNGC 6 cut(s) 683, 1060, 1298, 1598, 1805, 2413
BstNSI RCATGY 5 cut(s) 398, 1185, 1305, 1790, 1853
BstSFI CTRYAG 3 cut(s) 553, 2334, 2600
BstV1I GCAGC 4 cut(s) 199, 282, 721, 2666
BstV2I GAAGAC 2 cut(s) 1577, 1733
BstX2I RGATCY 2 cut(s) 907, 2565
BstYI RGATCY 2 cut(s) 907, 2565
BstZ17I GTATAC 1 cut(s) 1567
Bsu15I ATCGAT 1 cut(s) 1889
BsuI GTATCC 2 cut(s) 436, 1186
BsuTUI ATCGAT 1 cut(s) 1889
BtgI CCRYGG 1 cut(s) 2569
BtgZI GCGATG 1 cut(s) 1114
BtrI CACGTC 2 cut(s) 1395, 1517
BtsIMutI CAGTG 5 cut(s) 90, 511, 1284, 1303, 2111
Cac8I GCNNGC 1 cut(s) 190
CfoI GCGC 2 cut(s) 131, 1849
Cfr13I GGNCC 3 cut(s) 155, 1003, 2014
ClaI ATCGAT 1 cut(s) 1889
CseI GACGC 1 cut(s) 1052
Csp6I GTAC 4 cut(s) 279, 812, 2537, 2673
CviQI GTAC 4 cut(s) 279, 812, 2537, 2673
DdeI CTNAG 4 cut(s) 137, 320, 1059, 2696
DpnI GATC 5 cut(s) 909, 1038, 1674, 2073, 2567
DpnII GATC 5 cut(s) 907, 1036, 1672, 2071, 2565
DraI TTTAAA 1 cut(s) 241
DraIII CACNNNGTG 1 cut(s) 674
Eam1104I CTCTTC 3 cut(s) 636, 1101, 1972
EarI CTCTTC 3 cut(s) 636, 1101, 1972
Ecl136II GAGCTC 3 cut(s) 182, 248, 2620
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 4 cut(s) 184, 250, 2185, 2622
Eco32I GATATC 1 cut(s) 1481
Eco47I GGWCC 3 cut(s) 155, 1003, 2014
Eco53kI GAGCTC 3 cut(s) 182, 248, 2620
Eco57I CTGAAG 8 cut(s) 720, 910, 1112, 1139, 1271, 2309, 2402, 2582
EcoICRI GAGCTC 3 cut(s) 182, 248, 2620
EcoRI GAATTC 1 cut(s) 541
EcoRV GATATC 1 cut(s) 1481
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 2 cut(s) 438, 959
EcoT38I GRGCYC 4 cut(s) 184, 250, 2185, 2622
ErhI CCWWGG 1 cut(s) 282
FalI AAGNNNNNCTT 4 cut(s) 471, 503, 2170, 2202
FaqI GGGAC 3 cut(s) 35, 1339, 1527
FauNDI CATATG 5 cut(s) 217, 752, 1188, 1207, 1668
FblI GTMKAC 1 cut(s) 1566
Fnu4HI GCNGC 6 cut(s) 68, 213, 271, 710, 2458, 2680
FriOI GRGCYC 4 cut(s) 184, 250, 2185, 2622
Fsp4HI GCNGC 6 cut(s) 68, 213, 271, 710, 2458, 2680
FspI TGCGCA 2 cut(s) 130, 1848
GlaI GCGC 2 cut(s) 130, 1848
GluI GCNGC 6 cut(s) 68, 213, 271, 710, 2458, 2680
GsuI CTGGAG 2 cut(s) 747, 1920
HapII CCGG 3 cut(s) 440, 2021, 2174
HgaI GACGC 1 cut(s) 1052
HhaI GCGC 2 cut(s) 131, 1849
Hin6I GCGC 2 cut(s) 129, 1847
HinP1I GCGC 2 cut(s) 129, 1847
HincII GTYRAC 2 cut(s) 1792, 1855
HindII GTYRAC 2 cut(s) 1792, 1855
HindIII AAGCTT 1 cut(s) 2113
HpaII CCGG 3 cut(s) 440, 2021, 2174
HphI GGTGA 3 cut(s) 1250, 1812, 2273
Hpy166II GTNNAC 7 cut(s) 158, 485, 1567, 1792, 1855, 1882, 2014
Hpy188I TCNGA 9 cut(s) 23, 387, 865, 929, 1251, 1399, 1999, 2421, 2562
Hpy8I GTNNAC 7 cut(s) 158, 485, 1567, 1792, 1855, 1882, 2014
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 5 cut(s) 94, 197, 1007, 1462, 2709
HpyCH4IV ACGT 4 cut(s) 1394, 1516, 1794, 2268
HpyF10VI GCNNNNNNNGC 6 cut(s) 683, 1060, 1298, 1598, 1805, 2413
HpyF3I CTNAG 4 cut(s) 137, 320, 1059, 2696
HpySE526I ACGT 4 cut(s) 1394, 1516, 1794, 2268
HspAI GCGC 2 cut(s) 129, 1847
Kpn2I TCCGGA 2 cut(s) 439, 2020
Kzo9I GATC 5 cut(s) 907, 1036, 1672, 2071, 2565
LguI GCTCTTC 1 cut(s) 636
Lsp1109I GCAGC 4 cut(s) 199, 282, 721, 2666
LweI GCATC 6 cut(s) 445, 731, 784, 1646, 1768, 2023
MaeII ACGT 4 cut(s) 1394, 1516, 1794, 2268
MaeIII GTNAC 8 cut(s) 88, 649, 679, 1064, 1177, 1382, 1818, 2077
MalI GATC 5 cut(s) 909, 1038, 1674, 2073, 2567
MbiI CCGCTC 1 cut(s) 1348
MboI GATC 5 cut(s) 907, 1036, 1672, 2071, 2565
MfeI CAATTG 2 cut(s) 161, 2154
MflI RGATCY 2 cut(s) 907, 2565
MhlI GDGCHC 6 cut(s) 184, 250, 946, 1550, 2185, 2622
MlyI GAGTC 4 cut(s) 481, 1755, 1988, 2386
MmeI TCCRAC 1 cut(s) 1414
Mph1103I ATGCAT 2 cut(s) 438, 959
MroI TCCGGA 2 cut(s) 439, 2020
MroXI GAANNNNTTC 1 cut(s) 2580
MseI TTAA 5 cut(s) 240, 1610, 1950, 2117, 2373
MslI CAYNNNNRTG 2 cut(s) 878, 1210
MspA1I CMGCKG 4 cut(s) 67, 995, 1331, 2679
MspI CCGG 3 cut(s) 440, 2021, 2174
MunI CAATTG 2 cut(s) 161, 2154
Mva1269I GAATGC 2 cut(s) 356, 2418
MwoI GCNNNNNNNGC 6 cut(s) 683, 1060, 1298, 1598, 1805, 2413
NdeI CATATG 5 cut(s) 217, 752, 1188, 1207, 1668
NdeII GATC 5 cut(s) 907, 1036, 1672, 2071, 2565
NlaIV GGNNCC 4 cut(s) 76, 2184, 2301, 2588
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 5 cut(s) 88, 649, 679, 1064, 1818
NsbI TGCGCA 2 cut(s) 130, 1848
NsiI ATGCAT 2 cut(s) 438, 959
NspI RCATGY 5 cut(s) 398, 1185, 1305, 1790, 1853
NspV TTCGAA 1 cut(s) 2410
PciI ACATGT 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 636
PctI GAATGC 2 cut(s) 356, 2418
PdmI GAANNNNTTC 1 cut(s) 2580
PfeI GAWTC 6 cut(s) 175, 757, 1368, 1448, 1916, 2024
PkrI GCNGC 6 cut(s) 69, 214, 272, 711, 2459, 2681
PleI GAGTC 4 cut(s) 480, 1754, 1988, 2386
PpsI GAGTC 4 cut(s) 480, 1754, 1988, 2386
PscI ACATGT 1 cut(s) 394
Psp124BI GAGCTC 3 cut(s) 184, 250, 2622
PspN4I GGNNCC 4 cut(s) 76, 2184, 2301, 2588
PspPI GGNCC 3 cut(s) 155, 1003, 2014
PstI CTGCAG 3 cut(s) 557, 2338, 2604
PsuI RGATCY 2 cut(s) 907, 2565
PvuII CAGCTG 2 cut(s) 995, 2679
RsaI GTAC 4 cut(s) 280, 813, 2538, 2674
RsaNI GTAC 4 cut(s) 279, 812, 2537, 2673
RseI CAYNNNNRTG 2 cut(s) 878, 1210
SacI GAGCTC 3 cut(s) 184, 250, 2622
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 5 cut(s) 240, 1610, 1950, 2117, 2373
SatI GCNGC 6 cut(s) 68, 213, 271, 710, 2458, 2680
Sau3AI GATC 5 cut(s) 907, 1036, 1672, 2071, 2565
Sau96I GGNCC 3 cut(s) 155, 1003, 2014
SchI GAGTC 4 cut(s) 481, 1755, 1988, 2386
SduI GDGCHC 6 cut(s) 184, 250, 946, 1550, 2185, 2622
SfaNI GCATC 6 cut(s) 445, 731, 784, 1646, 1768, 2023
SfcI CTRYAG 3 cut(s) 553, 2334, 2600
SfuI TTCGAA 1 cut(s) 2410
SinI GGWCC 3 cut(s) 155, 1003, 2014
SmiMI CAYNNNNRTG 2 cut(s) 878, 1210
SsiI CCGC 4 cut(s) 67, 1331, 1348, 2458
SspI AATATT 2 cut(s) 9, 2226
SstI GAGCTC 3 cut(s) 184, 250, 2622
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 5 cut(s) 94, 197, 1007, 1462, 2709
TaiI ACGT 4 cut(s) 1397, 1519, 1797, 2271
TatI WGTACW 2 cut(s) 811, 2536
TauI GCSGC 2 cut(s) 70, 2460
TfiI GAWTC 6 cut(s) 175, 757, 1368, 1448, 1916, 2024
Tru1I TTAA 5 cut(s) 240, 1610, 1950, 2117, 2373
Tru9I TTAA 5 cut(s) 240, 1610, 1950, 2117, 2373
TscAI CASTG 5 cut(s) 97, 511, 1284, 1303, 2111
TseFI GTSAC 5 cut(s) 88, 649, 679, 1064, 1818
TseI GCWGC 4 cut(s) 212, 270, 709, 2679
Tsp45I GTSAC 5 cut(s) 88, 649, 679, 1064, 1818
TspDTI ATGAA 8 cut(s) 555, 605, 611, 654, 846, 852, 1112, 2357
TspGWI ACGGA 5 cut(s) 37, 88, 1540, 1607, 2158
TspRI CASTG 5 cut(s) 97, 511, 1284, 1303, 2111
VpaK11BI GGWCC 3 cut(s) 155, 1003, 2014
XapI RAATTY 5 cut(s) 541, 1504, 1655, 2064, 2347
XbaI TCTAGA 2 cut(s) 1529, 1984
XceI RCATGY 5 cut(s) 398, 1185, 1305, 1790, 1853
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 1566
XmnI GAANNNNTTC 1 cut(s) 2580
Zsp2I ATGCAT 2 cut(s) 438, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.