Rroxscaffold_5G00342280

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001399
Physical Location & Seq
Reverse (-)
11054659 .. 11068641
13983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342280.1

Sequence Viewer

Length: 582 bp
ATGGAGCAAGAGGGGAAGTCGGTTGATCAGGATTTGACAGATCTGTTGGACCATTTTCATCTTTCATTTGTTGCCGTTGAGTCTCCACCGTGTCATTTGACGAACGGTTGGAGATGGTCTAAGCCTCTTTTCCACTCTGAAATAAGAGAGCTAGATTGGTGCAATGTTGTTACATGTCATATGGATACTGCACAGGCATATGTTTGGAGACTTCAAAACTTTGTTCTTGGGGAGCATATTCTGAAACCAAGACCAGAAAACCCTACACTTGTGAAGGCCTGTGCCATCAGTGCATGTGGAAATTTTGCCATACTAGGGACAGCTGGTGGTTGGATTGAGCGGATCAACCTGCAGTCAGGAAGCAGCCGATGTAGTTATGTAGACCCATCGGAAAGAAGCATCTGTGCCCATGATGGGGAAGTTGTTGGAATTGCTTGTGATTCAACTAATACTCACATGATAACTGCTGGATATCATGGAGACATAAAGGTCAGTCTGTCGTTCTCTCATACAATATTCTCTACCTTGCTATTGGATTTACCGGTAGATAGGCACTTTGCACAAGAATATGCTGTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

193

Amino Acids

21.54

Weight (kDa)

5.57

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_2nd PF25168 46 - 181 5.5e-30 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 488
Acc36I ACCTGC 1 cut(s) 357
AccBSI CCGCTC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 381
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 301
AfiI CCNNNNNNNGG 3 cut(s) 315, 414, 415
AflIII ACRYGT 1 cut(s) 173
AgeI ACCGGT 1 cut(s) 541
AgsI TTSAA 2 cut(s) 215, 444
AluBI AGCT 2 cut(s) 151, 323
AluI AGCT 2 cut(s) 151, 323
Alw26I GTCTC 3 cut(s) 87, 202, 474
AlwI GGATC 1 cut(s) 350
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 301
AsiGI ACCGGT 1 cut(s) 541
AspS9I GGNCC 1 cut(s) 49
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 375
BccI CCATC 4 cut(s) 108, 293, 394, 407
BceAI ACGGC 1 cut(s) 59
BciVI GTATCC 1 cut(s) 178
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 3 cut(s) 87, 202, 474
BfaI CTAG 2 cut(s) 152, 314
BfmI CTRYAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 357
BfuI GTATCC 1 cut(s) 178
BglII AGATCT 1 cut(s) 40
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 541
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 414, 415
Bse118I RCCGGY 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 169
BseLI CCNNNNNNNGG 3 cut(s) 315, 414, 415
BseMI GCAATG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 541
BsiSI CCGG 1 cut(s) 542
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 3 cut(s) 315, 414, 415
BsmAI GTCTC 3 cut(s) 87, 202, 474
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 3 cut(s) 25, 40, 342
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 278
BspMAI CTGCAG 1 cut(s) 354
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 541
BssAI RCCGGY 1 cut(s) 541
BssMI GATC 3 cut(s) 25, 40, 342
Bst4CI ACNGT 2 cut(s) 90, 107
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 3 cut(s) 28, 43, 345
BstMAI GTCTC 3 cut(s) 87, 202, 474
BstMBI GATC 3 cut(s) 25, 40, 342
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 2 cut(s) 177, 297
BstSFI CTRYAG 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 295
BveI ACCTGC 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 49
CspAI ACCGGT 1 cut(s) 541
CviAII CATG 5 cut(s) 174, 294, 410, 457, 476
CviJI RGCY 5 cut(s) 124, 151, 278, 323, 366
CviKI_1 RGCY 5 cut(s) 124, 151, 278, 323, 366
DdeI CTNAG 1 cut(s) 120
DpnI GATC 3 cut(s) 27, 42, 344
DpnII GATC 3 cut(s) 25, 40, 342
DrdI GACNNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 488
Eco147I AGGCCT 1 cut(s) 278
Eco32I GATATC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 49
EcoRV GATATC 1 cut(s) 473
FaeI CATG 5 cut(s) 177, 297, 413, 460, 479
FaqI GGGAC 1 cut(s) 331
FatI CATG 5 cut(s) 173, 293, 409, 456, 475
FauNDI CATATG 2 cut(s) 180, 199
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 364
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 2 cut(s) 152, 314
GluI GCNGC 1 cut(s) 364
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 542
Hin1II CATG 5 cut(s) 177, 297, 413, 460, 479
HinfI GANTC 2 cut(s) 80, 440
HpaII CCGG 1 cut(s) 542
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 3 cut(s) 139, 243, 391
Hpy188III TCNNGA 2 cut(s) 29, 357
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 90, 107
HpyCH4V TGCA 5 cut(s) 162, 191, 293, 352, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 5 cut(s) 177, 297, 413, 460, 479
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 3 cut(s) 25, 40, 342
LmnI GCTCC 2 cut(s) 4, 232
LpnPI CCDG 9 cut(s) 14, 179, 267, 292, 309, 342, 362, 453, 555
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 408
MaeI CTAG 2 cut(s) 152, 314
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 27, 42, 344
MbiI CCGCTC 1 cut(s) 340
MboI GATC 3 cut(s) 25, 40, 342
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 2 cut(s) 301, 429
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 4 cut(s) 27, 89, 311, 406
MnlI CCTC 2 cut(s) 4, 135
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeI CATATG 2 cut(s) 180, 199
NdeII GATC 3 cut(s) 25, 40, 342
NlaIII CATG 5 cut(s) 177, 297, 413, 460, 479
NspI RCATGY 2 cut(s) 177, 297
PceI AGGCCT 1 cut(s) 278
PciI ACATGT 1 cut(s) 173
PfeI GAWTC 1 cut(s) 440
PinAI ACCGGT 1 cut(s) 541
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 173
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 354
PsuI RGATCY 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 3 cut(s) 25, 40, 342
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 409
SetI ASST 5 cut(s) 153, 325, 351, 492, 527
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 350
SinI GGWCC 1 cut(s) 49
Sse9I AATT 2 cut(s) 301, 429
SseBI AGGCCT 1 cut(s) 278
SsiI CCGC 1 cut(s) 340
SspI AATATT 1 cut(s) 516
SspMI CTAG 2 cut(s) 152, 314
StuI AGGCCT 1 cut(s) 278
TaaI ACNGT 2 cut(s) 90, 107
TasI AATT 2 cut(s) 301, 429
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 363
TspDTI ATGAA 2 cut(s) 47, 54
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 301
XceI RCATGY 2 cut(s) 177, 297
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 2 cut(s) 152, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.