Rh4AG078400

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001399
Physical Location & Seq
Reverse (-)
15926522 .. 15932425
5904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG078400.1

Sequence Viewer

Length: 348 bp
ATGGGAATCTTCGAGTCCTTCAGAGCAATCGGCTACACCACCACCTCCGTCCCCTTCTCCATTCAGCACCTCGGCACTGAAGCCTTCATCACCGTCACCGTCACCGTTGGCAAAGCCTTCCAAATTTACAATGTCTGGGATTTCAAGGGACGTGGAGTGCCATCTAGATGGGAAGTTGGGAGCTCTGTTGTCAGGATTGTATTCAATCGTTTGAATGGTCTCTTGGCTGTTGTGGCTGATGACTTAATTATCCGCTTGTTTGATGTTGTGGCATCAAGAATGGTTAGTAAATTTGAAGGCCATACTGATCGTGTTACAGACATGTGCTTTAGTGAGGATGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

115

Amino Acids

12.83

Weight (kDa)

6.72

Isoelectric Point (pI)

18.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_2nd PF25168 20 - 115 1.8e-17 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 43 - 114 3.6e-08 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 61 - 114 7.4e-06 WDR5 beta-propeller domain
WD40_Prp19 PF24814 74 - 114 6.9e-06 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 253
AcsI RAATTY 2 cut(s) 123, 290
AcuI CTGAAG 2 cut(s) 4, 99
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 4 cut(s) 145, 205, 214, 296
AjiI CACGTC 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 298
ApoI RAATTY 2 cut(s) 123, 290
AsuHPI GGTGA 3 cut(s) 82, 88, 94
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 185
BccI CCATC 3 cut(s) 162, 169, 332
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 152
BmsI GCATC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 343
BshFI GGCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 185
BslFI GGGAC 2 cut(s) 35, 162
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 35, 162
BsnI GGCC 1 cut(s) 300
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 300
BspTNI GGTCTC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 307
Bst4CI ACNGT 3 cut(s) 94, 100, 106
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 168
BsuRI GGCC 1 cut(s) 300
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 75
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 1 cut(s) 322
CviJI RGCY 7 cut(s) 33, 83, 116, 183, 227, 236, 300
CviKI_1 RGCY 7 cut(s) 33, 83, 116, 183, 227, 236, 300
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 4, 99
EcoICRI GAGCTC 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 1 cut(s) 325
FaiI YATR 2 cut(s) 303, 323
FaqI GGGAC 2 cut(s) 35, 162
FatI CATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 185
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 300
Hin1II CATG 1 cut(s) 325
HinfI GANTC 2 cut(s) 6, 14
HphI GGTGA 3 cut(s) 82, 88, 94
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 165, 193, 276
HpyAV CCTTC 5 cut(s) 28, 64, 94, 127, 290
HpyCH4III ACNGT 3 cut(s) 94, 100, 106
HpyCH4IV ACGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 2 cut(s) 121, 178
LweI GCATC 1 cut(s) 281
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 3 cut(s) 94, 100, 313
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 3 cut(s) 123, 246, 290
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 3 cut(s) 55, 80, 328
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 325
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 94, 100
NspI RCATGY 1 cut(s) 325
PciI ACATGT 1 cut(s) 321
PfeI GAWTC 1 cut(s) 6
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PscI ACATGT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 166
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 185
SetI ASST 4 cut(s) 47, 72, 154, 185
SfaNI GCATC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 166
Sse9I AATT 3 cut(s) 123, 246, 290
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 185
TaaI ACNGT 3 cut(s) 94, 100, 106
TaiI ACGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 123, 246, 290
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 2 cut(s) 94, 100
Tsp45I GTSAC 2 cut(s) 94, 100
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 82
XapI RAATTY 2 cut(s) 123, 290
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 325
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.