Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Forward (+)

63000585 .. 63001513

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTTTCGTTTCGCTCTGATAGTTTGCTCGGTAGGTTTGGCTCGGTAGGTTTGGCTGGTCCGCAATTGCCGAAGAAGATTCGAACTCTTGCTTCGTACCGGAACTACACATTCGCTGCGTATGGGACTGATATAGCTGTTTTTAAGAGATCTCATCAGGTCGCTACGTGGAACAGCCATAATGCAAAGGTCAATTTGTTGCTATTGTTTGGAGAGCACATCCTAAGTGTTGATATTGAAGGTAATCTGTATATATGGACATTTAAAGGAATTGATGAGAATCTTGATGCGGTTGGACGAAAATTTTACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

104

Amino Acids

11.69

Weight (kDa)

9.57

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	19 - 89	1.6e-14	WDR36/Utp21 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 290
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	313
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmsI	GCATC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	279
BseGI	GGATG	1 cut(s)	219
BseJI	GATNNNNATC	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	2 cut(s)	62, 290
BspT104I	TTCGAA	1 cut(s)	82
BssMI	GATC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	4 cut(s)	42, 56, 137, 177
CviKI_1	RGCY	4 cut(s)	42, 56, 137, 177
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
DraI	TTTAAA	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	59
FaiI	YATR	6 cut(s)	123, 134, 180, 252, 254, 256
FaqI	GGGAC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	313
GluI	GCNGC	1 cut(s)	117
HapII	CCGG	1 cut(s)	100
HinfI	GANTC	2 cut(s)	79, 280
HpaII	CCGG	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	149
LpnPI	CCDG	3 cut(s)	42, 113, 143
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	313
MaeII	ACGT	1 cut(s)	167
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	85, 88
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	4 cut(s)	65, 193, 270, 302
MmeI	TCCRAC	1 cut(s)	274
MseI	TTAA	2 cut(s)	144, 264
MspI	CCGG	1 cut(s)	100
MunI	CAATTG	1 cut(s)	65
NdeII	GATC	1 cut(s)	149
NspV	TTCGAA	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	79, 280
PkrI	GCNGC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	144, 264
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	149
Sau96I	GGNCC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	7 cut(s)	38, 52, 139, 162, 170, 192, 244
SfaNI	GCATC	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	82
SgeI	CNNG	8 cut(s)	41, 55, 69, 101, 112, 170, 180, 296
SinI	GGWCC	1 cut(s)	59
Sse9I	AATT	4 cut(s)	65, 193, 270, 302
SsiI	CCGC	2 cut(s)	62, 290
SspMI	CTAG	1 cut(s)	313
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	65, 193, 270, 302
TfiI	GAWTC	2 cut(s)	79, 280
Tru1I	TTAA	2 cut(s)	144, 264
Tru9I	TTAA	2 cut(s)	144, 264
TseI	GCWGC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	302
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.