Rmu_sc0001548.1_g000032

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001548.1
OG0001399
Physical Location & Seq
Reverse (-)
138447 .. 140170
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001548.1_g000032.1.cds

Sequence Viewer

Length: 552 bp
atgataagtgctggatatcatggagacataaaggtctgggatttcaagggacgtggagtgccatctagatgggaagttgggagctctgttgtcaggattgtattcaattgcttgaatggtcttttggctgttgcggctgatgacttaattatccgcttgtttgatgttgtggcatcaagaatggttcgtaaatttgaaggccatactgatcgtgttacagacgtacaaatcgatgcattgcatgttgatgtgtctgtgacggcactgtctctatcaccaaatatggatattttagcgacctcccatgttgatcaaaatggggtctgtctttgggtgaatcaatcaatgttttcgggagcttcaaaggtagattcctatgcaagtggaaagcaagttgtgagtgttaagttgccatctgtctctttgacaaaaggttcagaagctgaggattctgatgaacctgtcggaaactctgcacaacttaaagatgcttctgctcttccaactcttgtacagcaaattccagatcttgttactctcatcatatcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

183

Amino Acids

19.62

Weight (kDa)

5.06

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 32, 265
AciI CCGC 2 cut(s) 134, 154
AcsI RAATTY 2 cut(s) 191, 519
AfaI GTAC 2 cut(s) 225, 513
AgsI TTSAA 5 cut(s) 46, 106, 115, 197, 363
AjiI CACGTC 1 cut(s) 53
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 3 cut(s) 84, 359, 443
AluI AGCT 3 cut(s) 84, 359, 443
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 3 cut(s) 18, 273, 424
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 1 cut(s) 199
ApoI RAATTY 2 cut(s) 191, 519
AsuHPI GGTGA 2 cut(s) 267, 346
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 444
BccI CCATC 3 cut(s) 63, 70, 421
BceAI ACGGC 1 cut(s) 276
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 3 cut(s) 18, 273, 424
BfaI CTAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 526
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 53
BmsI GCATC 3 cut(s) 182, 223, 478
Bpu10I CCTNAGC 1 cut(s) 444
Bsa29I ATCGAT 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 231
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 435
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 86
BslFI GGGAC 1 cut(s) 63
BsmAI GTCTC 3 cut(s) 18, 273, 424
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 511
Bsp143I GATC 3 cut(s) 208, 310, 526
BspACI CCGC 2 cut(s) 134, 154
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 436
BspDI ATCGAT 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 511
BssMI GATC 3 cut(s) 208, 310, 526
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 504
BstAUI TGTACA 1 cut(s) 511
BstDEI CTNAG 1 cut(s) 444
BstKTI GATC 3 cut(s) 211, 313, 529
BstMAI GTCTC 3 cut(s) 18, 273, 424
BstMBI GATC 3 cut(s) 208, 310, 526
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 526
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 526
Bsu15I ATCGAT 1 cut(s) 231
BsuRI GGCC 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 231
BtrI CACGTC 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 263
CaiI CAGNNNCTG 1 cut(s) 443
ClaI ATCGAT 1 cut(s) 231
Csp6I GTAC 2 cut(s) 224, 512
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 3 cut(s) 20, 242, 305
CviJI RGCY 6 cut(s) 84, 128, 137, 201, 359, 443
CviKI_1 RGCY 6 cut(s) 84, 128, 137, 201, 359, 443
CviQI GTAC 2 cut(s) 224, 512
DdeI CTNAG 1 cut(s) 444
DpnI GATC 3 cut(s) 210, 312, 528
DpnII GATC 3 cut(s) 208, 310, 526
DrdI GACNNNNNNGTC 2 cut(s) 32, 265
DseDI GACNNNNNNGTC 2 cut(s) 32, 265
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 84
EcoRV GATATC 1 cut(s) 17
EcoT22I ATGCAT 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 3 cut(s) 23, 245, 308
FaiI YATR 8 cut(s) 21, 29, 204, 243, 284, 306, 378, 545
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 19, 241, 304
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 3 cut(s) 23, 245, 308
HinfI GANTC 3 cut(s) 337, 371, 449
HphI GGTGA 2 cut(s) 267, 346
Hpy188I TCNGA 3 cut(s) 439, 454, 467
Hpy188III TCNNGA 5 cut(s) 66, 94, 177, 354, 524
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 2 cut(s) 52, 222
HpyCH4V TGCA 4 cut(s) 236, 241, 380, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 2 cut(s) 52, 222
Hsp92II CATG 3 cut(s) 23, 245, 308
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 208, 310, 526
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 2 cut(s) 81, 356
LpnPI CCDG 4 cut(s) 22, 79, 474, 537
LweI GCATC 3 cut(s) 182, 223, 478
MaeI CTAG 1 cut(s) 66
MaeII ACGT 2 cut(s) 52, 222
MaeIII GTNAC 3 cut(s) 214, 256, 532
MalI GATC 3 cut(s) 210, 312, 528
MboI GATC 3 cut(s) 208, 310, 526
MboII GAAGA 1 cut(s) 491
MfeI CAATTG 1 cut(s) 106
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 4 cut(s) 106, 147, 191, 519
MmeI TCCRAC 2 cut(s) 445, 527
MnlI CCTC 2 cut(s) 310, 439
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 3 cut(s) 146, 405, 483
MslI CAYNNNNRTG 2 cut(s) 67, 246
MunI CAATTG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 3 cut(s) 208, 310, 526
NlaIII CATG 3 cut(s) 23, 245, 308
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 3 cut(s) 337, 371, 449
PkrI GCNGC 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 2 cut(s) 225, 513
RsaNI GTAC 2 cut(s) 224, 512
RseI CAYNNNNRTG 2 cut(s) 67, 246
SacI GAGCTC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 146, 405, 483
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 208, 310, 526
SduI GDGCHC 1 cut(s) 86
SfaNI GCATC 3 cut(s) 182, 223, 478
SmiMI CAYNNNNRTG 2 cut(s) 67, 246
Sse9I AATT 4 cut(s) 106, 147, 191, 519
SsiI CCGC 2 cut(s) 134, 154
SspMI CTAG 1 cut(s) 66
SstI GAGCTC 1 cut(s) 86
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 2 cut(s) 55, 225
TaqI TCGA 1 cut(s) 231
TasI AATT 4 cut(s) 106, 147, 191, 519
TatI WGTACW 1 cut(s) 511
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 3 cut(s) 337, 371, 449
Tru1I TTAA 3 cut(s) 146, 405, 483
Tru9I TTAA 3 cut(s) 146, 405, 483
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 471
TspRI CASTG 1 cut(s) 270
XapI RAATTY 2 cut(s) 191, 519
XbaI TCTAGA 1 cut(s) 65
XceI RCATGY 1 cut(s) 245
XspI CTAG 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.