Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001468.1

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Forward (+)

36782 .. 37328

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001468.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgggaatctttgaacccttcagagcaatcggctacacaaccacctacgtccccttctccgttcagcgcctcggcactgaagccttcgccaccgtcagcgtcggcaaatccttccaaatttacaattgcgcaaagctcactctggtcctcgtcggtctgcaattgccgaagaagattcgagctcttgcttcgtatcgggactacacattcgctgcgtatgggactgatatagctgtttttaagcgatctcatcaggttggttggcagctccttttctgtgagtgtgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

96

Amino Acids

10.78

Weight (kDa)

9.33

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	4, 99
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	4 cut(s)	136, 182, 233, 268
AluI	AGCT	4 cut(s)	136, 182, 233, 268
Alw21I	GWGCWC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	212, 265
ApoI	RAATTY	1 cut(s)	117
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspLEI	GCGC	2 cut(s)	69, 131
AspS9I	GGNCC	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	199, 277
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	2 cut(s)	213, 266
BlsI	GCNGC	2 cut(s)	214, 267
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	199, 277
BsiHKAI	GWGCWC	1 cut(s)	184
BslFI	GGGAC	3 cut(s)	35, 212, 235
BsmFI	GGGAC	3 cut(s)	35, 212, 235
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 131
BstKTI	GATC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	199, 277
BtsIMutI	CAGTG	1 cut(s)	75
CfoI	GCGC	2 cut(s)	69, 131
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	88
CviJI	RGCY	6 cut(s)	33, 83, 136, 182, 233, 268
CviKI_1	RGCY	6 cut(s)	33, 83, 136, 182, 233, 268
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	4, 99
EcoICRI	GAGCTC	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	184
FaiI	YATR	2 cut(s)	219, 230
FaqI	GGGAC	3 cut(s)	35, 212, 235
Fnu4HI	GCNGC	2 cut(s)	213, 266
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	213, 266
FspI	TGCGCA	1 cut(s)	130
GlaI	GCGC	2 cut(s)	68, 130
GluI	GCNGC	2 cut(s)	213, 266
HaeII	RGCGCY	1 cut(s)	70
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	2 cut(s)	69, 131
Hin6I	GCGC	2 cut(s)	67, 129
HinP1I	GCGC	2 cut(s)	67, 129
HinfI	GANTC	2 cut(s)	6, 175
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	197
Hpy99I	CGWCG	2 cut(s)	104, 155
HpyAV	CCTTC	4 cut(s)	28, 64, 94, 121
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	48
HspAI	GCGC	2 cut(s)	67, 129
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	2 cut(s)	128, 239
Lsp1109I	GCAGC	2 cut(s)	199, 277
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	2 cut(s)	181, 184
MfeI	CAATTG	2 cut(s)	124, 161
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	3 cut(s)	117, 124, 161
MnlI	CCTC	2 cut(s)	80, 158
MseI	TTAA	1 cut(s)	240
MunI	CAATTG	2 cut(s)	124, 161
NdeII	GATC	1 cut(s)	245
NmeAIII	GCCGAG	1 cut(s)	51
NsbI	TGCGCA	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	6, 175
PkrI	GCNGC	2 cut(s)	214, 267
Psp124BI	GAGCTC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	213, 266
Sau3AI	GATC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	7 cut(s)	47, 51, 138, 184, 235, 258, 270
SgeI	CNNG	7 cut(s)	83, 155, 161, 191, 197, 209, 266
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	117, 124, 161
SstI	GAGCTC	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	178
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	3 cut(s)	117, 124, 161
TfiI	GAWTC	2 cut(s)	6, 175
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	212, 265
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.