Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003929.1

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Forward (+)

3689 .. 5605

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003929.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggtctcttggctgttgttggctgatgacttaattatccgcttgtttgatgttgtggcatcaagaatggttcgtaaatttgaaggccatactgattgtgttacagacatgtgttttattgaggatggaaaatggcttttgtcttccagtatggatggaagtcttcgagtttggaatgttatcttagcaagacaaatcgatgcattgcatgttgatgtgtctgtgacggcactgtctctatcagtgaatatgtatattttagcgacctcccatgttgatcaaaatggggaacgaaataaaccgattgagcccccaaagaaacccgaaaaggctcctttctttttgccttcagttccatctctttcaggggaaataatgtttaatcctactgggtcaacaaatgaggaggcaaaaggtggtgaagaatcatctagaataaagactgctctggcaccatcaatattccttcaagcgcttcagtcatctgcagaaatgaagaatttttcagaatttactgatttcatcaaaactttggctccatcatccctggatatggaacttcgaattcttcagattgtaggtgatgaggatgaagaagagccagaaaagttgcttccaattgaactgcttttcgactattttatacacgagactgcatgcagaaacaattttgactttgtacaagctgtgatcagggtttttttgaagatacatggcgaaacaattcgacgccagtcaagattacaggataaggcaagcaaactcctagacgttcaatgcaacacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

262

Amino Acids

29.55

Weight (kDa)

4.93

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	451
AciI	CCGC	1 cut(s)	40
AcsI	RAATTY	4 cut(s)	77, 499, 509, 564
AcuI	CTGAAG	3 cut(s)	333, 461, 554
AcyI	GRCGYC	1 cut(s)	730
AfaI	GTAC	1 cut(s)	681
AfeI	AGCGCT	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	5 cut(s)	83, 470, 623, 706, 776
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	1 cut(s)	686
AluI	AGCT	1 cut(s)	686
Alw26I	GTCTC	3 cut(s)	10, 240, 644
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	1 cut(s)	85
ApoI	RAATTY	4 cut(s)	77, 499, 509, 564
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	431, 593
AsuII	TTCGAA	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	312
BauI	CACGAG	1 cut(s)	647
BbsI	GAAGAC	2 cut(s)	135, 155
BccI	CCATC	5 cut(s)	119, 149, 364, 463, 547
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	548
BclI	TGATCA	2 cut(s)	277, 690
BcoDI	GTCTC	3 cut(s)	10, 240, 644
BfaI	CTAG	2 cut(s)	432, 767
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	548
BmiI	GGNNCC	3 cut(s)	333, 453, 537
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	68, 190
BmuI	ACTGGG	1 cut(s)	399
BoxI	GACNNNNGTC	1 cut(s)	733
BpiI	GAAGAC	2 cut(s)	135, 155
Bpu14I	TTCGAA	1 cut(s)	562
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	3 cut(s)	147, 394, 733
Bse3DI	GCAATG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	548
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	4 cut(s)	130, 160, 542, 595
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	203
BseNI	ACTGG	3 cut(s)	147, 394, 733
BseRI	GAGGAG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	451
BshVI	ATCGAT	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	3 cut(s)	10, 240, 644
BsnI	GGCC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp1407I	TGTACA	1 cut(s)	679
Bsp143I	GATC	2 cut(s)	277, 690
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	87
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	333, 453, 537
BspMAI	CTGCAG	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	591
BspT104I	TTCGAA	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	679
BsrI	ACTGG	3 cut(s)	147, 394, 733
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	2 cut(s)	277, 690
BssNI	GRCGYC	1 cut(s)	730
BssSI	CACGAG	1 cut(s)	647
Bst2BI	CACGAG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	591
BstACI	GRCGYC	1 cut(s)	730
BstAUI	TGTACA	1 cut(s)	679
BstBI	TTCGAA	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	658, 757
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	4 cut(s)	130, 160, 542, 595
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	2 cut(s)	280, 693
BstMAI	GTCTC	3 cut(s)	10, 240, 644
BstMBI	GATC	2 cut(s)	277, 690
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	3 cut(s)	112, 212, 660
BstPAI	GACNNNNGTC	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	1 cut(s)	486
BstV2I	GAAGAC	2 cut(s)	135, 155
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	4 cut(s)	130, 160, 542, 595
BtsIMutI	CAGTG	2 cut(s)	230, 249
Cac8I	GCNNGC	2 cut(s)	658, 757
CfoI	GCGC	1 cut(s)	475
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	738
Csp6I	GTAC	1 cut(s)	680
CviAII	CATG	6 cut(s)	109, 209, 272, 657, 713, 786
CviJI	RGCY	9 cut(s)	13, 23, 87, 136, 310, 332, 536, 601, 686
CviKI_1	RGCY	9 cut(s)	13, 23, 87, 136, 310, 332, 536, 601, 686
CviQI	GTAC	1 cut(s)	680
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	2 cut(s)	279, 692
DpnII	GATC	2 cut(s)	277, 690
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	10
Eco47III	AGCGCT	1 cut(s)	474
Eco57I	CTGAAG	3 cut(s)	333, 461, 554
EcoRI	GAATTC	1 cut(s)	564
EcoRII	CCWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	312
FaeI	CATG	6 cut(s)	112, 212, 275, 660, 716, 789
FatI	CATG	6 cut(s)	108, 208, 271, 656, 712, 785
FbaI	TGATCA	2 cut(s)	277, 690
FokI	GGATG	4 cut(s)	137, 167, 529, 602
FriOI	GRGCYC	1 cut(s)	312
FspBI	CTAG	2 cut(s)	432, 767
GlaI	GCGC	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	87
HgaI	GACGC	1 cut(s)	738
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	730
Hin1II	CATG	6 cut(s)	112, 212, 275, 660, 716, 789
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	1 cut(s)	425
HphI	GGTGA	2 cut(s)	431, 593
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	2 cut(s)	508, 573
Hpy188III	TCNNGA	3 cut(s)	63, 432, 738
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	1 cut(s)	732
HpyAV	CCTTC	3 cut(s)	77, 357, 476
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	6 cut(s)	203, 208, 488, 656, 660, 780
HpyF3I	CTNAG	1 cut(s)	184
HpySE526I	ACGT	1 cut(s)	771
Hsp92I	GRCGYC	1 cut(s)	730
Hsp92II	CATG	6 cut(s)	112, 212, 275, 660, 716, 789
HspAI	GCGC	1 cut(s)	473
Ksp22I	TGATCA	2 cut(s)	277, 690
Kzo9I	GATC	2 cut(s)	277, 690
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	2 cut(s)	337, 541
LweI	GCATC	2 cut(s)	68, 190
MaeI	CTAG	2 cut(s)	432, 767
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	2 cut(s)	100, 223
MalI	GATC	2 cut(s)	279, 692
MboI	GATC	2 cut(s)	277, 690
MboII	GAAGA	8 cut(s)	135, 155, 434, 508, 560, 605, 608, 718
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	8 cut(s)	33, 77, 499, 509, 564, 618, 667, 723
MnlI	CCTC	5 cut(s)	115, 277, 397, 400, 580
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	2 cut(s)	32, 381
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	548
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	548
NdeII	GATC	2 cut(s)	277, 690
NlaIII	CATG	6 cut(s)	112, 212, 275, 660, 716, 789
NlaIV	GGNNCC	3 cut(s)	333, 453, 537
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	3 cut(s)	112, 212, 660
NspV	TTCGAA	1 cut(s)	562
PaeI	GCATGC	1 cut(s)	660
PciI	ACATGT	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	1 cut(s)	425
PscI	ACATGT	1 cut(s)	108
PshAI	GACNNNNGTC	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	3 cut(s)	333, 453, 537
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	681
RsaNI	GTAC	1 cut(s)	680
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	32, 381
Sau3AI	GATC	2 cut(s)	277, 690
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	5 cut(s)	269, 418, 583, 688, 774
SfaNI	GCATC	2 cut(s)	68, 190
SfcI	CTRYAG	1 cut(s)	486
SfuI	TTCGAA	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	8 cut(s)	33, 77, 499, 509, 564, 618, 667, 723
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	1 cut(s)	462
SspMI	CTAG	2 cut(s)	432, 767
StyD4I	CCNGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	5 cut(s)	166, 198, 562, 633, 727
TasI	AATT	8 cut(s)	33, 77, 499, 509, 564, 618, 667, 723
TatI	WGTACW	1 cut(s)	679
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	32, 381
Tru9I	TTAA	2 cut(s)	32, 381
TscAI	CASTG	2 cut(s)	237, 249
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	509, 511, 606
TspRI	CASTG	2 cut(s)	237, 249
XapI	RAATTY	4 cut(s)	77, 499, 509, 564
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	3 cut(s)	112, 212, 660
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	2 cut(s)	432, 767
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.