RLG00000009433

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001399
Physical Location & Seq
Forward (+)
52749672 .. 52750152
481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009433

Sequence Viewer

Length: 396 bp
ATGTACAGGTCTGGGATTTCAAGGAAACGTGGAGTGCCATCTAGATGGGAATTTGGGAGCTCTGTAGTCAGGATTGTATTCAATCGTTTGAATGGTCTTTTGGCTGTTGCGGCTGATGACTTAATTATCCGCTTGTTTGATGTTGTGGCATCAAGAATGGTTCGTATATTTGAAGGCCATACTGATTGTGTTACAGACATGTGTTTTAGTGAGGATGGAAAATGGCTCTTGTCTTCCAGTATGGATGGAAGTCTTCGAGTTTGGGATGTTATCTTAGCAAGACAAATGGATGCATTGCATGTTGATGTGTCTGTGACGGCACTGTCTCTATCACCGAATATGGATGTTTTCGCGATATCCCATGTTGATCAAAATGGGGTCTATCTTTGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

5.84

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_2nd PF25168 15 - 130 8.3e-37 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 18 - 101 1.2e-13 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 20 - 125 1e-17 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 20 - 89 5.4e-06 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 20 - 89 3.5e-08 MABP1/WDR62 second WD40 domain
Beta-prop_THOC3 PF25174 20 - 119 5.8e-14 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 20 - 124 8.6e-16 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 21 - 130 2.2e-07 CDC20/Fizzy WD40 domain
EIF3I PF24805 21 - 118 1.5e-06 EIF3I
Beta-prop_EML_2 PF23414 22 - 90 1.1e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 25 - 121 5.6e-08 WDR90/POC16, second beta-propeller
WDR55 PF24796 32 - 90 3e-07 WDR55
WD40_Prp19 PF24814 33 - 107 7.2e-11 Prp19 WD40 domain
Beta-prop_WDR75_1st PF23869 37 - 120 9.9e-07 WD repeat-containing protein 75 first beta-propeller
WD40_Gbeta PF25391 37 - 121 1e-05 G protein beta WD-40 repeat protein
WD40 PF00400 53 - 89 3.7e-13 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 53 - 122 8.4e-08 CAF1B/HIR1 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 322
AccII CGCG 1 cut(s) 353
AciI CCGC 2 cut(s) 110, 130
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 2 cut(s) 5, 392
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 4 cut(s) 21, 82, 91, 173
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 330
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 324
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 2 cut(s) 225, 245
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 4 cut(s) 39, 46, 209, 239
BceAI ACGGC 1 cut(s) 333
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 2 cut(s) 42, 394
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmsI GCATC 2 cut(s) 158, 280
BpiI GAAGAC 2 cut(s) 225, 245
Bse1I ACTGG 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 293
BseGI GGATG 5 cut(s) 220, 250, 271, 295, 349
BseMI GCAATG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 330
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 367
Bsp68I TCGCGA 1 cut(s) 353
BspACI CCGC 2 cut(s) 110, 130
BspANI GGCC 1 cut(s) 177
BspFNI CGCG 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 237
BssMI GATC 1 cut(s) 367
Bst4CI ACNGT 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 274
BstF5I GGATG 5 cut(s) 220, 250, 271, 295, 349
BstFNI CGCG 1 cut(s) 353
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 202, 302
BstSFI CTRYAG 1 cut(s) 63
BstUI CGCG 1 cut(s) 353
BstV2I GAAGAC 2 cut(s) 225, 245
BstXI CCANNNNNNTGG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 5 cut(s) 220, 250, 271, 295, 349
BtsIMutI CAGTG 1 cut(s) 320
BtuMI TCGCGA 1 cut(s) 353
Csp6I GTAC 2 cut(s) 4, 391
CviAII CATG 3 cut(s) 199, 299, 362
CviJI RGCY 5 cut(s) 60, 104, 113, 177, 226
CviKI_1 RGCY 5 cut(s) 60, 104, 113, 177, 226
CviQI GTAC 2 cut(s) 4, 391
DdeI CTNAG 1 cut(s) 274
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DrdI GACNNNNNNGTC 1 cut(s) 322
DseDI GACNNNNNNGTC 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 62
Eco32I GATATC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoRV GATATC 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 3 cut(s) 202, 302, 365
FaiI YATR 7 cut(s) 167, 180, 200, 242, 300, 341, 363
FatI CATG 3 cut(s) 198, 298, 361
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 5 cut(s) 227, 257, 278, 302, 356
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 42, 394
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 3 cut(s) 202, 302, 365
HphI GGTGA 1 cut(s) 324
Hpy188III TCNNGA 4 cut(s) 42, 70, 153, 352
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 293, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 274
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 3 cut(s) 202, 302, 365
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 2 cut(s) 55, 250
LweI GCATC 2 cut(s) 158, 280
MaeI CTAG 2 cut(s) 42, 394
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 2 cut(s) 190, 313
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 2 cut(s) 225, 245
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 2 cut(s) 50, 123
MnlI CCTC 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 295
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 2 cut(s) 43, 303
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 367
NlaIII CATG 3 cut(s) 202, 302, 365
NmuCI GTSAC 1 cut(s) 313
NruI TCGCGA 1 cut(s) 353
NsiI ATGCAT 1 cut(s) 295
NspI RCATGY 2 cut(s) 202, 302
PciI ACATGT 1 cut(s) 198
PkrI GCNGC 1 cut(s) 112
PscI ACATGT 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 62
RruI TCGCGA 1 cut(s) 353
RsaI GTAC 2 cut(s) 5, 392
RsaNI GTAC 2 cut(s) 4, 391
RseI CAYNNNNRTG 2 cut(s) 43, 303
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 367
SduI GDGCHC 1 cut(s) 62
SetI ASST 3 cut(s) 11, 31, 62
SfaNI GCATC 2 cut(s) 158, 280
SfcI CTRYAG 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 43, 303
Sse9I AATT 2 cut(s) 50, 123
SsiI CCGC 2 cut(s) 110, 130
SspMI CTAG 2 cut(s) 42, 394
SstI GAGCTC 1 cut(s) 62
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 256
TasI AATT 2 cut(s) 50, 123
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspRI CASTG 1 cut(s) 327
XapI RAATTY 1 cut(s) 50
XbaI TCTAGA 1 cut(s) 41
XceI RCATGY 2 cut(s) 202, 302
XspI CTAG 2 cut(s) 42, 394
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.