Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001399

Physical Location & Seq

Genomic Coordinates Reverse (-)

13784775 .. 13785886

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGAATCTTCGAGCCCTTCAGACCAATCGGCTACACAACCACCTCCGTCCCCTTCTCCGTTCAGCGCCCCTCGGCACTGAAGCCTTCGTCACCGTCAGCGTCGGCAAAGCCTTCCAAATTTACAATTGCGCAAAGCTCACTCTGGTCCTCGTCGGTCCGCAATTGCCGAAGAAGATTCGGGCTCTTGCTTCGTACCTGGACTACAGTCTACACATTCGCTGCGTATGGGACTGATATAGCTGTTTTTAAGCGATCTCATCAGGTCGCTACGTGGAGCATATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

ANAPC4_WD40 Utp21 WD40

Protein Analysis

95

Amino Acids

10.58

Weight (kDa)

11.3

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04940 AT4G04940
fragaria_vesca	FvH4_4g05841 FvH4_4g06010
malus_domestica	MD13G1232300.v1.1 MD16G1237800.v1.1
prunus_persica	Prupe.1G063600_v2.0.a1
pyrus_communis	pycom13g20470 pycom16g19910
rosa_chinensis	RchiOBHm_Chr2g0145351 RchiOBHm_Chr4g0397311 RchiOBHm_Chr4g0397331 RchiOBHm_Chr4g0397341 RchiOBHm_Chr4g0397361 RchiOBHm_Chr4g0397371 RchiOBHm_Chr4g0397411
rosa_laevigata	RLG00000002471 RLG00000009433 RLG00000009436
rosa_multiflora	Rmu_sc0001468.1_g000010 Rmu_sc0001468.1_g000012 Rmu_sc0001468.1_g000040 Rmu_sc0001548.1_g000012 Rmu_sc0001548.1_g000032 Rmu_sc0001548.1_g000034 Rmu_sc0003239.1_g000008 Rmu_sc0003929.1_g000001 Rmu_sc0003929.1_g000002 Rmu_sc0003929.1_g000014 Rmu_sc0007006.1_g000001 Rmu_sc0011587.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342190 Rroxscaffold_5G00342260 Rroxscaffold_5G00342270 Rroxscaffold_5G00342280 Rroxscaffold_5G00342290 Rroxscaffold_5G00342330 Rroxscaffold_5G00342350
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh2DG463100 Rh4AG078300 Rh4AG078400 Rh4AG078600 Rh4BG073900 Rh4BG074100 Rh4BG076400 Rh4CG083500 Rh4CG083800 Rh4DG071800
rosa_wichuraiana	Rw0G011980 Rw4G006350 Rw4G006370 Rw4G006400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	4, 101
AfaI	GTAC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	2 cut(s)	138, 242
AluI	AGCT	2 cut(s)	138, 242
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	69, 133
AspS9I	GGNCC	2 cut(s)	147, 157
AsuHPI	GGTGA	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	147, 157
BanII	GRGCYC	2 cut(s)	18, 186
BbvI	GCAGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	2 cut(s)	147, 157
BmgT120I	GGNCC	2 cut(s)	147, 157
BmrFI	CCNGG	1 cut(s)	199
BoxI	GACNNNNGTC	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	35, 244
BsmFI	GGGAC	2 cut(s)	35, 244
Bsp1286I	GDGCHC	2 cut(s)	18, 186
Bsp143I	GATC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	96, 208
BstBAI	YACGTR	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 133
BstKTI	GATC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	199
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	77
CfoI	GCGC	2 cut(s)	69, 133
Cfr13I	GGNCC	2 cut(s)	147, 157
CpoI	CGGWCCG	1 cut(s)	157
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	195
CspI	CGGWCCG	1 cut(s)	157
CviJI	RGCY	7 cut(s)	16, 33, 85, 112, 138, 184, 242
CviKI_1	RGCY	7 cut(s)	16, 33, 85, 112, 138, 184, 242
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
Eco24I	GRGCYC	2 cut(s)	18, 186
Eco47I	GGWCC	2 cut(s)	147, 157
Eco57I	CTGAAG	2 cut(s)	4, 101
EcoRII	CCWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	18, 186
FaiI	YATR	3 cut(s)	228, 239, 281
FaqI	GGGAC	2 cut(s)	35, 244
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	222
FriOI	GRGCYC	2 cut(s)	18, 186
Fsp4HI	GCNGC	1 cut(s)	222
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	2 cut(s)	68, 132
GluI	GCNGC	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	70
HgaI	GACGC	1 cut(s)	90
HhaI	GCGC	2 cut(s)	69, 133
Hin6I	GCGC	2 cut(s)	67, 131
HinP1I	GCGC	2 cut(s)	67, 131
HinfI	GANTC	2 cut(s)	6, 177
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	2 cut(s)	106, 157
HpyAV	CCTTC	4 cut(s)	28, 64, 96, 123
HpyCH4III	ACNGT	2 cut(s)	96, 208
HpyCH4IV	ACGT	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	272
HspAI	GCGC	2 cut(s)	67, 131
Kzo9I	GATC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	4 cut(s)	130, 184, 211, 248
Lsp1109I	GCAGC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	2 cut(s)	183, 186
MfeI	CAATTG	2 cut(s)	126, 163
MhlI	GDGCHC	2 cut(s)	18, 186
MluCI	AATT	3 cut(s)	119, 126, 163
MnlI	CCTC	3 cut(s)	55, 82, 160
MseI	TTAA	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	199
MunI	CAATTG	2 cut(s)	126, 163
MvaI	CCWGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	254
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	90
NsbI	TGCGCA	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	6, 177
PkrI	GCNGC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	273
PshAI	GACNNNNGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspPI	GGNCC	2 cut(s)	147, 157
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
Rsr2I	CGGWCCG	1 cut(s)	157
RsrII	CGGWCCG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	254
Sau96I	GGNCC	2 cut(s)	147, 157
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	2 cut(s)	18, 186
SetI	ASST	6 cut(s)	47, 140, 200, 244, 267, 275
SfcI	CTRYAG	1 cut(s)	204
SgeI	CNNG	9 cut(s)	25, 85, 157, 163, 193, 199, 210, 211, 275
SinI	GGWCC	2 cut(s)	147, 157
Sse9I	AATT	3 cut(s)	119, 126, 163
SsiI	CCGC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	96, 208
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	12
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	3 cut(s)	119, 126, 163
TfiI	GAWTC	2 cut(s)	6, 177
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	90
TspGWI	ACGGA	2 cut(s)	37, 49
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	147, 157
XapI	RAATTY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.