Rh4CG083500

U3 small nucleolar RNA-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001399
Physical Location & Seq
Reverse (-)
14872629 .. 14879059
6431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG083500.1

Sequence Viewer

Length: 504 bp
ATGGGAATCTTCGAGTCCTTCAGAGCAATCGGCTACACCACCACCTCCGTCCCCTTCTCCATTCAGCACCTCGGCACTGAAGCCTTCATCACCGTCACCGTCACCGTTGGCAAAGCCTTCCAAATTTACAATGTCTGGGATTTCAAGGGACGTGGAGTGCCATCTAGATGGGAAGTTGGGAGCTCTGTTGTCAGGATTGTATTCAATCGTTTGAATGTGAGGATGGAAAATAGCTCGTCTTCCAGTATGGATGGAAATCTTCAAGTTTGGGATGTCATCTTAGCAAGACAAATCGATGCATTGCATGTTGATGTGTCTGTGACGGCACTGTCTCTATCACCGAATATGGATATTTTAGCGACCTCCCATGTTGATCAAAATGGGGCTATCTTCGTTTCAGAATTTACTGATTTCATCAAAACTTTGTCTCCAACATCCCTGGATATGGAACTTCGAATTCTTCAGATTGTGGGTGATGAGGATGAAGAAGAGGTTTTTCTGAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
ANAPC4_WD40 Utp21 WD40

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

4.65

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_2nd PF25168 80 - 138 1.1e-10 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
AcsI RAATTY 3 cut(s) 123, 401, 456
AcuI CTGAAG 3 cut(s) 4, 99, 446
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 4 cut(s) 145, 205, 214, 263
AjiI CACGTC 1 cut(s) 152
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 2 cut(s) 183, 234
AluI AGCT 2 cut(s) 183, 234
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 2 cut(s) 336, 432
ApoI RAATTY 3 cut(s) 123, 401, 456
AsuHPI GGTGA 5 cut(s) 82, 88, 94, 330, 485
AsuII TTCGAA 1 cut(s) 454
BanII GRGCYC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 185
BccI CCATC 4 cut(s) 162, 169, 217, 245
BceAI ACGGC 1 cut(s) 339
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 336, 432
BfaI CTAG 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 440
BmgBI CACGTC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 454
Bsa29I ATCGAT 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 70, 438
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 299
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 1 cut(s) 440
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 70, 438
BseGI GGATG 5 cut(s) 228, 256, 277, 434, 487
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 185
BslFI GGGAC 2 cut(s) 35, 162
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 2 cut(s) 336, 432
BsmFI GGGAC 2 cut(s) 35, 162
Bsp119I TTCGAA 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 373
BspDI ATCGAT 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 70, 438
BssMI GATC 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 4 cut(s) 94, 100, 106, 330
Bst6I CTCTTC 1 cut(s) 483
BstBI TTCGAA 1 cut(s) 454
BstDEI CTNAG 1 cut(s) 280
BstF5I GGATG 5 cut(s) 228, 256, 277, 434, 487
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 2 cut(s) 336, 432
BstMBI GATC 1 cut(s) 373
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 168
Bsu15I ATCGAT 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 294
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 5 cut(s) 228, 256, 277, 434, 487
BtsIMutI CAGTG 2 cut(s) 75, 326
ClaI ATCGAT 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 2 cut(s) 305, 368
CviJI RGCY 6 cut(s) 33, 83, 116, 183, 234, 386
CviKI_1 RGCY 6 cut(s) 33, 83, 116, 183, 234, 386
DdeI CTNAG 1 cut(s) 280
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 3 cut(s) 4, 99, 446
EcoICRI GAGCTC 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 2 cut(s) 308, 371
FaiI YATR 5 cut(s) 248, 306, 347, 369, 446
FaqI GGGAC 2 cut(s) 35, 162
FatI CATG 2 cut(s) 304, 367
FbaI TGATCA 1 cut(s) 373
FokI GGATG 5 cut(s) 235, 263, 284, 421, 494
FriOI GRGCYC 1 cut(s) 185
FspBI CTAG 1 cut(s) 165
Hin1II CATG 2 cut(s) 308, 371
HinfI GANTC 2 cut(s) 6, 14
HphI GGTGA 5 cut(s) 82, 88, 94, 330, 485
Hpy188I TCNGA 4 cut(s) 23, 400, 465, 501
Hpy188III TCNNGA 2 cut(s) 165, 193
HpyAV CCTTC 4 cut(s) 28, 64, 94, 127
HpyCH4III ACNGT 4 cut(s) 94, 100, 106, 330
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 299, 304
HpyF3I CTNAG 1 cut(s) 280
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 2 cut(s) 308, 371
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 5 cut(s) 121, 178, 256, 425, 452
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 3 cut(s) 94, 100, 319
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 6 cut(s) 231, 251, 382, 452, 497, 500
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 3 cut(s) 123, 401, 456
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 6 cut(s) 55, 80, 213, 373, 472, 484
Mph1103I ATGCAT 1 cut(s) 301
MslI CAYNNNNRTG 2 cut(s) 166, 309
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
NdeII GATC 1 cut(s) 373
NlaIII CATG 2 cut(s) 308, 371
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 3 cut(s) 94, 100, 319
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 1 cut(s) 308
NspV TTCGAA 1 cut(s) 454
PfeI GAWTC 1 cut(s) 6
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
RseI CAYNNNNRTG 2 cut(s) 166, 309
SacI GAGCTC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 373
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 1 cut(s) 185
SetI ASST 7 cut(s) 47, 72, 154, 185, 236, 365, 495
SfaNI GCATC 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 454
SmiMI CAYNNNNRTG 2 cut(s) 166, 309
Sse9I AATT 3 cut(s) 123, 401, 456
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 438
TaaI ACNGT 4 cut(s) 94, 100, 106, 330
TaiI ACGT 1 cut(s) 154
TaqI TCGA 3 cut(s) 12, 294, 454
TasI AATT 3 cut(s) 123, 401, 456
TfiI GAWTC 1 cut(s) 6
TscAI CASTG 2 cut(s) 82, 333
TseFI GTSAC 3 cut(s) 94, 100, 319
Tsp45I GTSAC 3 cut(s) 94, 100, 319
TspDTI ATGAA 3 cut(s) 76, 403, 498
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 2 cut(s) 82, 333
XapI RAATTY 3 cut(s) 123, 401, 456
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.