RchiOBHm_Chr1g0337041

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009358
Physical Location & Seq
Forward (+)
28706452 .. 28708237
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1626 bp
ATGGACAAAGAGCTTCTGGCTGCAAAATCAGCCAAATTTGCTGCTACACTCAAAGAGAATCCGCAGGAAGATCTTGCGAACTTCCTCCAAAGTGTCCCTGCTACTGCAGACACTCTTGAGCTTGTTGCGAGATTCTATCATGGCTTTGAAATTCAAATTTGCAGTCAGAATGTTGTACAGCTCATTTGCGTTGCTGACTACTTGGACATGACTGAAAACCACAGCAAAGATAATTTATTACACAAAGCTATTTCATATTTTCAACAAAGAATCCTCCCTAGCTGGTCTGAAACTATTAAGGCTTTCCGATCCACAGAAAAGGTATTTCAACAATCCTGGAAGCTTGGATTAGTACACGAATGTTTGGATTCTATCATTAGAAAGGCAAAAGCTAGTCCCCAACTTCTGGGCGAACCAATCAAGAATTCTACTGCAAATGCTGATGATAGTGACGAGGATTATGAAGGTTATAAGCCGAATGCAAGGAGAAGGCTCTTCGATCTCAATTGGAAACCAGAGGATCTAACGACATTGTCCCTGCAGCTTTATGAGCTCCTCATGCAAGCAATGAATAAGCATGGAGTTCCATCAGAATATGTGGCTGCATCTCTTTGTAACTACACTAAGAAATGGGTTTTCTCTAGCAGTGGAGAGGAAGCACTCAAGAAAAAGTACCAAAAGGACATCCTTGAAGCAGTTGAGAGGCTTTTGCCTGATGAAATAGGACTCCTTCCTTGCACGTTGTTGTTTCAAATGCTTCGAGTTGCTATTTATTTGGAAGTTACCTCTGACTGCAGAAATGGGATTGAGATCAGAATTGGAAAACAACTTGACCAGGCAACAGTCAAAGACCTCTTAATACCATCTCACGGCTATTCTAAAGTAGTGCAATATGATATTCAATGTGTGAGAAGGATTGTGAAGGTTTTCTATGCTAATTACTCTTCTTCAAATGTAACTGACATAACTGGTCTAATAGCAGTGGCAGATCTCATTGAAGAATTCTTAGCTGAAGTTGCTAGTGACATAGACTTGAAGATATCTACATTTGTTGGATTAGCAGAGATGTTGGTTTCAGCATCCATGGGAGTAAAAACAAACTCGGATGGAATATACGGGGCTGTTGCTATATACTTAGATAAGCACAGGCACTTGACAGAATCCGAGCGAGAAGAAGTGTGTCAGGTATTGGATTTCCAAAAGATGTCCCCCCAAGCTTGTGATCATGCAGCCAAAAATGAATGCATGCCATTAAGGATGGTGGTACAGGTGTTGTTTGCGGGGCAATTGCAGCTTAGAGACACGATCACGAAGGAGGTGCAGAGTTCGGATGAGAAATTAATAAAAGAAGAAGCAGACGAGGTGAATGCACCAAGGGTGGATTTGTGTGAGGGGAAAATGAGATCTGAGGTGGAGAAAATGAGCAAAAAGGTGATGCAGCTTGAGAGAGAGTGCAGTATGATGAGAAAAGAGATTGAGAATAGCTCTAGCCTTGTGGTGAGGAAGGAAAAACCTAGCTTGTGGAGAGAAATGAAGAGAAAGTTTGGTTGCATCAGCAGCGCTCACGATTCTAACTGCCAATTGAAGAAGCAAAAGTTGCCTCTGAAACCAAAACGTGGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

541

Amino Acids

61.39

Weight (kDa)

6.15

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 169 - 407 1.3e-69 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AccB7I CCANNNNNTGG 2 cut(s) 406, 1616
AciI CCGC 2 cut(s) 62, 1280
AclWI GGATC 2 cut(s) 303, 528
AcsI RAATTY 5 cut(s) 35, 150, 156, 424, 1001
AcuI CTGAAG 1 cut(s) 1032
AfaI GTAC 4 cut(s) 177, 354, 674, 1266
AfeI AGCGCT 1 cut(s) 1561
AfiI CCNNNNNNNGG 3 cut(s) 406, 869, 1616
AjnI CCWGG 2 cut(s) 335, 834
AjuI GAANNNNNNNTTGG 2 cut(s) 409, 441
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 1293
AlwI GGATC 2 cut(s) 303, 528
Aor51HI AGCGCT 1 cut(s) 1561
ApeKI GCWGC 8 cut(s) 20, 41, 541, 602, 1229, 1291, 1438, 1557
ApoI RAATTY 5 cut(s) 35, 150, 156, 424, 1001
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AseI ATTAAT 1 cut(s) 1340
Asp700I GAANNNNTTC 1 cut(s) 926
AspLEI GCGC 1 cut(s) 1562
AsuHPI GGTGA 3 cut(s) 1375, 1444, 1510
BaeI ACNNNNGTAYC 2 cut(s) 1256, 1289
BanII GRGCYC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 8 cut(s) 7, 28, 553, 589, 1241, 1303, 1450, 1569
BccI CCATC 4 cut(s) 595, 871, 1100, 1252
BceAI ACGGC 1 cut(s) 886
BcgI CGANNNNNNTGC 4 cut(s) 1300, 1334, 1349, 1383
BciT130I CCWGG 2 cut(s) 337, 836
BclI TGATCA 1 cut(s) 1222
BcoDI GTCTC 1 cut(s) 1293
BfaI CTAG 6 cut(s) 279, 393, 642, 1020, 1488, 1515
BfmI CTRYAG 3 cut(s) 105, 539, 793
BfoI RGCGCY 1 cut(s) 1563
BglII AGATCT 3 cut(s) 70, 988, 1403
BisI GCNGC 8 cut(s) 21, 42, 542, 603, 1230, 1292, 1439, 1558
BlsI GCNGC 8 cut(s) 22, 43, 543, 604, 1231, 1293, 1440, 1559
Bme1390I CCNGG 2 cut(s) 337, 836
BmrFI CCNGG 2 cut(s) 337, 836
BmsI GCATC 4 cut(s) 614, 1088, 1425, 1560
BplI GAGNNNNNCTC 2 cut(s) 1469, 1501
BpuEI CTTGAG 3 cut(s) 137, 647, 1463
BsaBI GATNNNNATC 1 cut(s) 809
BsaJI CCNNGG 2 cut(s) 1083, 1373
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 869, 1616
Bse1I ACTGG 1 cut(s) 973
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 809
BseBI CCWGG 2 cut(s) 337, 836
BseDI CCNNGG 2 cut(s) 1083, 1373
BseGI GGATG 5 cut(s) 684, 1079, 1111, 1263, 1336
BseJI GATNNNNATC 1 cut(s) 809
BseLI CCNNNNNNNGG 3 cut(s) 406, 869, 1616
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 1 cut(s) 1398
BseNI ACTGG 1 cut(s) 973
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 8 cut(s) 7, 28, 553, 589, 1241, 1303, 1450, 1569
BsgI GTGCAG 2 cut(s) 1340, 1474
BsiHKAI GWGCWC 1 cut(s) 555
BslFI GGGAC 4 cut(s) 80, 381, 520, 1192
BslI CCNNNNNNNGG 3 cut(s) 406, 869, 1616
BsmAI GTCTC 1 cut(s) 1293
BsmFI GGGAC 4 cut(s) 80, 381, 520, 1192
BsmI GAATGC 3 cut(s) 484, 1247, 1372
Bsp1286I GDGCHC 1 cut(s) 555
Bsp1407I TGTACA 1 cut(s) 175
Bsp143I GATC 9 cut(s) 70, 308, 499, 520, 810, 988, 1222, 1305, 1403
Bsp19I CCATGG 1 cut(s) 1083
BspACI CCGC 2 cut(s) 62, 1280
BspCNI CTCAG 1 cut(s) 1399
BspMAI CTGCAG 3 cut(s) 109, 543, 797
BspPI GGATC 2 cut(s) 303, 528
BspQI GCTCTTC 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 175
BsrI ACTGG 1 cut(s) 973
BssECI CCNNGG 2 cut(s) 1083, 1373
BssMI GATC 9 cut(s) 70, 308, 499, 520, 810, 988, 1222, 1305, 1403
BssT1I CCWWGG 2 cut(s) 1083, 1373
Bst2UI CCWGG 2 cut(s) 337, 836
Bst4CI ACNGT 2 cut(s) 844, 1623
Bst6I CTCTTC 3 cut(s) 500, 949, 1529
BstAPI GCANNNNNTGC 1 cut(s) 1597
BstAUI TGTACA 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 564, 1247
BstDEI CTNAG 5 cut(s) 624, 1006, 1135, 1295, 1407
BstDSI CCRYGG 1 cut(s) 1083
BstF5I GGATG 5 cut(s) 684, 1079, 1111, 1263, 1336
BstH2I RGCGCY 1 cut(s) 1563
BstHHI GCGC 1 cut(s) 1562
BstKTI GATC 9 cut(s) 73, 311, 502, 523, 813, 991, 1225, 1308, 1406
BstMAI GTCTC 1 cut(s) 1293
BstMBI GATC 9 cut(s) 70, 308, 499, 520, 810, 988, 1222, 1305, 1403
BstMWI GCNNNNNNNGC 8 cut(s) 29, 38, 550, 559, 1016, 1291, 1557, 1597
BstNI CCWGG 2 cut(s) 337, 836
BstNSI RCATGY 1 cut(s) 1249
BstSCI CCNGG 2 cut(s) 335, 834
BstSFI CTRYAG 3 cut(s) 105, 539, 793
BstV1I GCAGC 8 cut(s) 7, 28, 553, 589, 1241, 1303, 1450, 1569
BstX2I RGATCY 4 cut(s) 70, 520, 988, 1403
BstYI RGATCY 4 cut(s) 70, 520, 988, 1403
BtgI CCRYGG 1 cut(s) 1083
BtsCI GGATG 5 cut(s) 684, 1079, 1111, 1263, 1336
BtsI GCAGTG 2 cut(s) 652, 987
BtsIMutI CAGTG 2 cut(s) 652, 987
Cac8I GCNNGC 2 cut(s) 564, 1247
CfoI GCGC 1 cut(s) 1562
Csp6I GTAC 4 cut(s) 176, 353, 673, 1265
CviAII CATG 7 cut(s) 140, 208, 559, 578, 1084, 1226, 1246
CviQI GTAC 4 cut(s) 176, 353, 673, 1265
DdeI CTNAG 5 cut(s) 624, 1006, 1135, 1295, 1407
DpnI GATC 9 cut(s) 72, 310, 501, 522, 812, 990, 1224, 1307, 1405
DpnII GATC 9 cut(s) 70, 308, 499, 520, 810, 988, 1222, 1305, 1403
Eam1104I CTCTTC 3 cut(s) 500, 949, 1529
EarI CTCTTC 3 cut(s) 500, 949, 1529
Ecl136II GAGCTC 1 cut(s) 553
Eco130I CCWWGG 2 cut(s) 1083, 1373
Eco24I GRGCYC 1 cut(s) 555
Eco32I GATATC 1 cut(s) 1041
Eco47III AGCGCT 1 cut(s) 1561
Eco53kI GAGCTC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 1032
EcoICRI GAGCTC 1 cut(s) 553
EcoRI GAATTC 2 cut(s) 424, 1001
EcoRII CCWGG 2 cut(s) 335, 834
EcoRV GATATC 1 cut(s) 1041
EcoT14I CCWWGG 2 cut(s) 1083, 1373
EcoT22I ATGCAT 1 cut(s) 1247
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 2 cut(s) 1083, 1373
FaeI CATG 7 cut(s) 143, 211, 562, 581, 1087, 1229, 1249
FaqI GGGAC 4 cut(s) 80, 381, 520, 1192
FatI CATG 7 cut(s) 139, 207, 558, 577, 1083, 1225, 1245
FauI CCCGC 1 cut(s) 1273
FbaI TGATCA 1 cut(s) 1222
Fnu4HI GCNGC 8 cut(s) 21, 42, 542, 603, 1230, 1292, 1439, 1558
FokI GGATG 5 cut(s) 671, 1066, 1118, 1270, 1343
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 8 cut(s) 21, 42, 542, 603, 1230, 1292, 1439, 1558
FspBI CTAG 6 cut(s) 279, 393, 642, 1020, 1488, 1515
GlaI GCGC 1 cut(s) 1561
GluI GCNGC 8 cut(s) 21, 42, 542, 603, 1230, 1292, 1439, 1558
HaeII RGCGCY 1 cut(s) 1563
HhaI GCGC 1 cut(s) 1562
Hin1II CATG 7 cut(s) 143, 211, 562, 581, 1087, 1229, 1249
Hin6I GCGC 1 cut(s) 1560
HinP1I GCGC 1 cut(s) 1560
HindIII AAGCTT 2 cut(s) 341, 1215
HinfI GANTC 7 cut(s) 58, 132, 270, 368, 726, 1160, 1568
HphI GGTGA 3 cut(s) 1375, 1444, 1510
Hpy166II GTNNAC 2 cut(s) 355, 1619
Hpy188III TCNNGA 5 cut(s) 116, 421, 664, 1309, 1565
Hpy8I GTNNAC 2 cut(s) 355, 1619
HpyAV CCTTC 7 cut(s) 458, 483, 740, 906, 916, 1306, 1498
HpyCH4III ACNGT 2 cut(s) 844, 1623
HpyCH4IV ACGT 2 cut(s) 740, 1615
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 38, 550, 559, 1016, 1291, 1557, 1597
HpyF3I CTNAG 5 cut(s) 624, 1006, 1135, 1295, 1407
HpySE526I ACGT 2 cut(s) 740, 1615
Hsp92II CATG 7 cut(s) 143, 211, 562, 581, 1087, 1229, 1249
HspAI GCGC 1 cut(s) 1560
Ksp22I TGATCA 1 cut(s) 1222
Kzo9I GATC 9 cut(s) 70, 308, 499, 520, 810, 988, 1222, 1305, 1403
LguI GCTCTTC 1 cut(s) 500
LmnI GCTCC 1 cut(s) 558
Lsp1109I GCAGC 8 cut(s) 7, 28, 553, 589, 1241, 1303, 1450, 1569
LweI GCATC 4 cut(s) 614, 1088, 1425, 1560
MaeI CTAG 6 cut(s) 279, 393, 642, 1020, 1488, 1515
MaeII ACGT 2 cut(s) 740, 1615
MaeIII GTNAC 5 cut(s) 449, 614, 781, 955, 1022
MalI GATC 9 cut(s) 72, 310, 501, 522, 812, 990, 1224, 1307, 1405
MboI GATC 9 cut(s) 70, 308, 499, 520, 810, 988, 1222, 1305, 1403
MfeI CAATTG 3 cut(s) 505, 1286, 1580
MflI RGATCY 4 cut(s) 70, 520, 988, 1403
MhlI GDGCHC 1 cut(s) 555
MlyI GAGTC 1 cut(s) 720
MmeI TCCRAC 1 cut(s) 1033
Mph1103I ATGCAT 1 cut(s) 1247
MroXI GAANNNNTTC 1 cut(s) 926
MseI TTAA 4 cut(s) 297, 857, 1253, 1340
MspR9I CCNGG 2 cut(s) 337, 836
MunI CAATTG 3 cut(s) 505, 1286, 1580
Mva1269I GAATGC 3 cut(s) 484, 1247, 1372
MvaI CCWGG 2 cut(s) 337, 836
MwoI GCNNNNNNNGC 8 cut(s) 29, 38, 550, 559, 1016, 1291, 1557, 1597
NcoI CCATGG 1 cut(s) 1083
NdeII GATC 9 cut(s) 70, 308, 499, 520, 810, 988, 1222, 1305, 1403
NlaIII CATG 7 cut(s) 143, 211, 562, 581, 1087, 1229, 1249
NmuCI GTSAC 2 cut(s) 449, 1022
NsiI ATGCAT 1 cut(s) 1247
NspI RCATGY 1 cut(s) 1249
PaeI GCATGC 1 cut(s) 1249
PciSI GCTCTTC 1 cut(s) 500
PctI GAATGC 3 cut(s) 484, 1247, 1372
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 6 cut(s) 58, 132, 270, 368, 1160, 1568
PflFI GACNNNGTC 1 cut(s) 532
PflMI CCANNNNNTGG 2 cut(s) 406, 1616
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 8 cut(s) 22, 43, 543, 604, 1231, 1293, 1440, 1559
PleI GAGTC 1 cut(s) 720
PpsI GAGTC 1 cut(s) 720
PshBI ATTAAT 1 cut(s) 1340
PsiI TTATAA 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 335, 834
PspGI CCWGG 2 cut(s) 335, 834
PstI CTGCAG 3 cut(s) 109, 543, 797
PsuI RGATCY 4 cut(s) 70, 520, 988, 1403
PsyI GACNNNGTC 1 cut(s) 532
RsaI GTAC 4 cut(s) 177, 354, 674, 1266
RsaNI GTAC 4 cut(s) 176, 353, 673, 1265
SacI GAGCTC 1 cut(s) 555
SapI GCTCTTC 1 cut(s) 500
SaqAI TTAA 4 cut(s) 297, 857, 1253, 1340
SatI GCNGC 8 cut(s) 21, 42, 542, 603, 1230, 1292, 1439, 1558
Sau3AI GATC 9 cut(s) 70, 308, 499, 520, 810, 988, 1222, 1305, 1403
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 2 cut(s) 337, 836
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 4 cut(s) 614, 1088, 1425, 1560
SfcI CTRYAG 3 cut(s) 105, 539, 793
SmlI CTYRAG 3 cut(s) 116, 662, 1442
SmoI CTYRAG 3 cut(s) 116, 662, 1442
SphI GCATGC 1 cut(s) 1249
SsiI CCGC 2 cut(s) 62, 1280
SspMI CTAG 6 cut(s) 279, 393, 642, 1020, 1488, 1515
SstI GAGCTC 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 335, 834
StyI CCWWGG 2 cut(s) 1083, 1373
TaaI ACNGT 2 cut(s) 844, 1623
TaiI ACGT 2 cut(s) 743, 1618
TaqI TCGA 2 cut(s) 498, 760
TatI WGTACW 2 cut(s) 175, 352
TfiI GAWTC 6 cut(s) 58, 132, 270, 368, 1160, 1568
Tru1I TTAA 4 cut(s) 297, 857, 1253, 1340
Tru9I TTAA 4 cut(s) 297, 857, 1253, 1340
TscAI CASTG 2 cut(s) 652, 987
TseFI GTSAC 2 cut(s) 449, 1022
TseI GCWGC 8 cut(s) 20, 41, 541, 602, 1229, 1291, 1438, 1557
Tsp45I GTSAC 2 cut(s) 449, 1022
TspDTI ATGAA 6 cut(s) 243, 477, 584, 732, 1254, 1547
TspRI CASTG 2 cut(s) 652, 987
Tth111I GACNNNGTC 1 cut(s) 532
Van91I CCANNNNNTGG 2 cut(s) 406, 1616
VspI ATTAAT 1 cut(s) 1340
XapI RAATTY 5 cut(s) 35, 150, 156, 424, 1001
XceI RCATGY 1 cut(s) 1249
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 6 cut(s) 279, 393, 642, 1020, 1488, 1515
Zsp2I ATGCAT 1 cut(s) 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.