Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Reverse (-)

34685948 .. 34686873

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGGTAAATGTCCTGGTAGATATGGGAAGTGTTGGAAGGCAAGTTCTTGTTAAAATTATGAGGGAAAGGAAGTTCTTGCGTGGTTCTATTCAGACAGTTCTTCTTCTCAATAGGCAACATGGACCTGCTCGTCTCTGTGCTAATTATGACTATCAAGTGAGTAGTCTTAGAAGACTAGCATCAGGTGTACAAGAAGAAGCTCAGCAGTGCAGGAGGAGAAAAAGGGATGAAGAAGACAACCCTTGGGATCTTAAAGAGGAACTACAGAGTGTGAAGGTCACCATGATAAGCGTCGATGGTTCAAAAAGGATGCAAAAGGATATTGCCATTAACCAGCAAAGGATTTCTACCCACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

120

Amino Acids

13.89

Weight (kDa)

9.92

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	15
AloI	GAACNNNNNNTCC	4 cut(s)	30, 59, 62, 91
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	181, 243
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	136
BlpI	GCTNAGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	191, 303
BpiI	GAAGAC	2 cut(s)	181, 243
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	235, 318
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	250
Bsp1720I	GCTNAGC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	258
BsrGI	TGTACA	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	170, 204
BstEII	GGTNACC	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	235, 318
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	17
BstPI	GGTNACC	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	266
BstV2I	GAAGAC	2 cut(s)	181, 243
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	235, 318
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	2 cut(s)	122, 286
CviJI	RGCY	1 cut(s)	203
CviKI_1	RGCY	1 cut(s)	203
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	170, 204
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	132
DseDI	GACNNNNNNGTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	2 cut(s)	125, 289
FaiI	YATR	5 cut(s)	26, 62, 123, 150, 287
FatI	CATG	2 cut(s)	121, 285
FokI	GGATG	2 cut(s)	242, 325
FspBI	CTAG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	125, 289
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	96, 362
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	33, 271
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	213, 316
HpyF3I	CTNAG	2 cut(s)	170, 204
Hsp92II	CATG	2 cut(s)	125, 289
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	6 cut(s)	2, 29, 141, 171, 199, 350
LweI	GCATC	2 cut(s)	191, 303
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	6 cut(s)	95, 98, 186, 209, 245, 248
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	2 cut(s)	57, 145
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	57, 210, 253
MseI	TTAA	3 cut(s)	54, 255, 333
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	125, 289
NmuCI	GTSAC	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	15
PspEI	GGTNACC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	54, 255, 333
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	5 cut(s)	130, 190, 205, 282, 360
SfaNI	GCATC	2 cut(s)	191, 303
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	2 cut(s)	57, 145
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	57, 145
TatI	WGTACW	1 cut(s)	190
Tru1I	TTAA	3 cut(s)	54, 255, 333
Tru9I	TTAA	3 cut(s)	54, 255, 333
TscAI	CASTG	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	125
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.