RchiOBHm_Chr1g0346561
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006635
Physical Location & Seq
Forward (+)
38992422 .. 38994558
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 906 bp
ATGCTGACCCTTCCCCTTCGCCTAACTTCAGCCACTAAAACCCTCCGTTCACATTTTCTCTCCACCTTCTCCAAAATCGCAATGGACGCCTCCGGCGGTCAAACCCAGCCCCACCGCAACGACTCCGACCATTCCTCCGCCCACCACCACCAAAACGTCGTCGTCATGCGCCACGGCGACCGCATCGACAACTTCGAGCCCCGCTGGATCAAAAACGCCGCCCGCCCGTGGGACCCGCCTCTCGTGGAGGAGGGCCGGGTCCGGGCCTTCTGCACGGGCGCGAAGCTCCGGTCCGATCTCGGGTTCCCGGTCCACCGCGTGTTCGTGTCGCCGTTCGTGCGCTGCGTCGAGACCGCCGTCCAGGTCGTCACCGCCCTCTCCGCTAGAGAGACGCCGTCGTTGGACAAATACGACAGTCGTAAACCCCTCCCCGTTGATCCCTCCAAGCTCAAGGTCTCAATTGAATATGGCTTGTGCGAGATGCTAAATAGAGAGGCCATTCGTGGTGATGTAGCTCCAAAAGATGGAAATTGGGGTTTCAACATCCCAGAACTTGAAGCCATGTTCCCAGAAGGGACGGTGGATCGCATTGTGGAAAGAGTTTACAAAGAGTTGCCCCAGTGGGGAGAGAGTGTGATGGATGCAAGGTCAAGGTATGCTAATGTGGTTCAGGCCCTTGCAGATAAACACCCTATGGAAAATTTGCTCCTTGTCACTCACGGTGAAGGAGTCGGTGCCTCAATTAGTTCATTCCTGGAGGGTGCCACAGTATATGAAGCAGAGTACTGTGCATATTCAGAACTACGAAGGCCCATCTTCTGCAATGACCAGTCATCGACTGCTGGAAAGTTTGAGGTATTGACAAATCTTGGTCAGACTGGTATCAGTTACTCTCTTGCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

301

Amino Acids

33.54

Weight (kDa)

6.37

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 195 - 252 3.8e-06 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 734, 761
AccB7I CCANNNNNTGG 1 cut(s) 524
AccII CGCG 2 cut(s) 281, 318
AclWI GGATC 3 cut(s) 215, 431, 591
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 1 cut(s) 12
AcyI GRCGYC 2 cut(s) 87, 392
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 6 cut(s) 228, 229, 262, 300, 524, 623
AgsI TTSAA 3 cut(s) 464, 541, 557
AjnI CCWGG 2 cut(s) 360, 753
AluBI AGCT 3 cut(s) 286, 448, 515
AluI AGCT 3 cut(s) 286, 448, 515
Alw26I GTCTC 3 cut(s) 344, 383, 460
AlwI GGATC 3 cut(s) 215, 431, 591
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 5 cut(s) 253, 264, 495, 672, 809
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 700
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspLEI GCGC 3 cut(s) 171, 281, 342
AspS9I GGNCC 8 cut(s) 232, 253, 259, 264, 291, 310, 673, 810
AsuC2I CCSGG 3 cut(s) 257, 263, 308
AsuHPI GGTGA 3 cut(s) 361, 518, 734
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 4 cut(s) 232, 259, 291, 310
BanI GGYRCC 2 cut(s) 734, 761
BanII GRGCYC 1 cut(s) 201
BauI CACGAG 1 cut(s) 242
BbvI GCAGC 1 cut(s) 329
BccI CCATC 3 cut(s) 518, 631, 821
BceAI ACGGC 4 cut(s) 190, 316, 341, 379
BciT130I CCWGG 2 cut(s) 362, 755
BcnI CCSGG 3 cut(s) 257, 263, 308
BcoDI GTCTC 3 cut(s) 344, 383, 460
BfaI CTAG 1 cut(s) 384
BisI GCNGC 2 cut(s) 219, 343
BlsI GCNGC 2 cut(s) 220, 344
BmcAI AGTACT 1 cut(s) 785
Bme1390I CCNGG 5 cut(s) 257, 263, 308, 362, 755
Bme18I GGWCC 4 cut(s) 232, 259, 291, 310
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 8 cut(s) 232, 253, 259, 264, 291, 310, 673, 810
BmiI GGNNCC 6 cut(s) 233, 234, 260, 305, 736, 763
BmrFI CCNGG 5 cut(s) 257, 263, 308, 362, 755
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 3 cut(s) 192, 471, 631
BmuI ACTGGG 1 cut(s) 613
BoxI GACNNNNGTC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 3 cut(s) 257, 263, 308
BsaHI GRCGYC 2 cut(s) 87, 392
BsaI GGTCTC 2 cut(s) 344, 460
BsaJI CCNNGG 2 cut(s) 172, 227
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 618, 648
Bsc4I CCNNNNNNNGG 6 cut(s) 228, 229, 262, 300, 524, 623
Bse1I ACTGG 3 cut(s) 619, 829, 883
Bse3DI GCAATG 2 cut(s) 87, 829
BseBI CCWGG 2 cut(s) 362, 755
BseDI CCNNGG 2 cut(s) 172, 227
BseGI GGATG 2 cut(s) 543, 646
BseLI CCNNNNNNNGG 6 cut(s) 228, 229, 262, 300, 524, 623
BseMI GCAATG 2 cut(s) 87, 829
BseNI ACTGG 3 cut(s) 619, 829, 883
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 329
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 256
Bsh1236I CGCG 2 cut(s) 281, 318
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 5 cut(s) 255, 266, 497, 674, 811
BshNI GGYRCC 2 cut(s) 734, 761
BsiEI CGRYCG 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 5 cut(s) 93, 256, 262, 289, 308
BslFI GGGAC 2 cut(s) 245, 589
BslI CCNNNNNNNGG 6 cut(s) 228, 229, 262, 300, 524, 623
BsmAI GTCTC 3 cut(s) 344, 383, 460
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 2 cut(s) 245, 589
BsnI GGCC 5 cut(s) 255, 266, 497, 674, 811
Bso31I GGTCTC 2 cut(s) 344, 460
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 4 cut(s) 207, 295, 436, 583
BspANI GGCC 5 cut(s) 255, 266, 497, 674, 811
BspFNI CGCG 2 cut(s) 281, 318
BspLI GGNNCC 6 cut(s) 233, 234, 260, 305, 736, 763
BspPI GGATC 3 cut(s) 215, 431, 591
BspT107I GGYRCC 2 cut(s) 734, 761
BspTNI GGTCTC 2 cut(s) 344, 460
BsrDI GCAATG 2 cut(s) 87, 829
BsrI ACTGG 3 cut(s) 619, 829, 883
BssECI CCNNGG 2 cut(s) 172, 227
BssMI GATC 4 cut(s) 207, 295, 436, 583
BssNI GRCGYC 2 cut(s) 87, 392
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 362, 755
Bst4CI ACNGT 5 cut(s) 416, 580, 722, 769, 788
BstACI GRCGYC 2 cut(s) 87, 392
BstC8I GCNNGC 1 cut(s) 223
BstDSI CCRYGG 2 cut(s) 172, 227
BstF5I GGATG 2 cut(s) 543, 646
BstFNI CGCG 2 cut(s) 281, 318
BstHHI GCGC 3 cut(s) 171, 281, 342
BstKTI GATC 4 cut(s) 210, 298, 439, 586
BstMAI GTCTC 3 cut(s) 344, 383, 460
BstMBI GATC 4 cut(s) 207, 295, 436, 583
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 86, 337, 380
BstNI CCWGG 2 cut(s) 362, 755
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 5 cut(s) 255, 261, 306, 360, 753
BstUI CGCG 2 cut(s) 281, 318
BstV1I GCAGC 1 cut(s) 329
BsuRI GGCC 5 cut(s) 255, 266, 497, 674, 811
BtgI CCRYGG 2 cut(s) 172, 227
BtsCI GGATG 2 cut(s) 543, 646
BtsIMutI CAGTG 1 cut(s) 626
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 3 cut(s) 171, 281, 342
Cfr13I GGNCC 8 cut(s) 232, 253, 259, 264, 291, 310, 673, 810
CpoI CGGWCCG 1 cut(s) 291
CseI GACGC 3 cut(s) 95, 334, 400
Csp6I GTAC 1 cut(s) 784
CspI CGGWCCG 1 cut(s) 291
CviAII CATG 2 cut(s) 166, 562
CviQI GTAC 1 cut(s) 784
DpnI GATC 4 cut(s) 209, 297, 438, 585
DpnII GATC 4 cut(s) 207, 295, 436, 583
DraIII CACNNNGTG 1 cut(s) 319
EciI GGCGGA 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 2 cut(s) 344, 460
Eco47I GGWCC 4 cut(s) 232, 259, 291, 310
Eco57I CTGAAG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 232, 673
EcoRII CCWGG 2 cut(s) 360, 753
EcoT38I GRGCYC 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 2 cut(s) 169, 565
FaiI YATR 8 cut(s) 167, 468, 563, 657, 695, 772, 774, 793
FaqI GGGAC 2 cut(s) 245, 589
FatI CATG 2 cut(s) 165, 561
FauI CCCGC 3 cut(s) 209, 230, 243
Fnu4HI GCNGC 2 cut(s) 219, 343
FokI GGATG 2 cut(s) 530, 653
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 219, 343
FspBI CTAG 1 cut(s) 384
GlaI GCGC 3 cut(s) 170, 280, 341
GluI GCNGC 2 cut(s) 219, 343
GsaI CCCAGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 776
HaeIII GGCC 5 cut(s) 255, 266, 497, 674, 811
HapII CCGG 5 cut(s) 93, 256, 262, 289, 308
HgaI GACGC 3 cut(s) 95, 334, 400
HhaI GCGC 3 cut(s) 171, 281, 342
Hin1I GRCGYC 2 cut(s) 87, 392
Hin1II CATG 2 cut(s) 169, 565
Hin6I GCGC 3 cut(s) 169, 279, 340
HinP1I GCGC 3 cut(s) 169, 279, 340
HinfI GANTC 2 cut(s) 122, 729
HpaII CCGG 5 cut(s) 93, 256, 262, 289, 308
HphI GGTGA 3 cut(s) 361, 518, 734
Hpy166II GTNNAC 4 cut(s) 50, 313, 422, 604
Hpy188I TCNGA 4 cut(s) 127, 295, 799, 876
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 4 cut(s) 50, 313, 422, 604
Hpy99I CGWCG 4 cut(s) 161, 164, 350, 400
HpyAV CCTTC 7 cut(s) 20, 26, 76, 277, 566, 719, 801
HpyCH4III ACNGT 5 cut(s) 416, 580, 722, 769, 788
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 6 cut(s) 273, 644, 680, 791, 822, 899
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 337, 380
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 2 cut(s) 87, 392
Hsp92II CATG 2 cut(s) 169, 565
HspAI GCGC 3 cut(s) 169, 279, 340
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 4 cut(s) 207, 295, 436, 583
LmnI GCTCC 3 cut(s) 291, 520, 711
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 3 cut(s) 192, 471, 631
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 3 cut(s) 367, 712, 887
MalI GATC 4 cut(s) 209, 297, 438, 585
MboI GATC 4 cut(s) 207, 295, 436, 583
MboII GAAGA 1 cut(s) 808
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 459, 529, 700, 741
MlyI GAGTC 2 cut(s) 116, 738
MmeI TCCRAC 2 cut(s) 150, 381
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 5 cut(s) 93, 256, 262, 289, 308
MspR9I CCNGG 5 cut(s) 257, 263, 308, 362, 755
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 2 cut(s) 362, 755
MvnI CGCG 2 cut(s) 281, 318
MwoI GCNNNNNNNGC 3 cut(s) 86, 337, 380
NciI CCSGG 3 cut(s) 257, 263, 308
NdeII GATC 4 cut(s) 207, 295, 436, 583
NlaIII CATG 2 cut(s) 169, 565
NlaIV GGNNCC 6 cut(s) 233, 234, 260, 305, 736, 763
NmuCI GTSAC 2 cut(s) 367, 712
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 342, 354
PflFI GACNNNGTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 524
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 2 cut(s) 220, 344
PleI GAGTC 2 cut(s) 116, 737
PpsI GAGTC 2 cut(s) 116, 737
PpuMI RGGWCCY 1 cut(s) 232
PshAI GACNNNNGTC 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 360, 753
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 2 cut(s) 360, 753
PspN4I GGNNCC 6 cut(s) 233, 234, 260, 305, 736, 763
PspPI GGNCC 8 cut(s) 232, 253, 259, 264, 291, 310, 673, 810
PspPPI RGGWCCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
Rsr2I CGGWCCG 1 cut(s) 291
RsrII CGGWCCG 1 cut(s) 291
SatI GCNGC 2 cut(s) 219, 343
Sau3AI GATC 4 cut(s) 207, 295, 436, 583
Sau96I GGNCC 8 cut(s) 232, 253, 259, 264, 291, 310, 673, 810
ScaI AGTACT 1 cut(s) 785
SchI GAGTC 2 cut(s) 116, 738
ScrFI CCNGG 5 cut(s) 257, 263, 308, 362, 755
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 3 cut(s) 192, 471, 631
SinI GGWCC 4 cut(s) 232, 259, 291, 310
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 4 cut(s) 459, 529, 700, 741
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 5 cut(s) 255, 261, 306, 360, 753
TaaI ACNGT 5 cut(s) 416, 580, 722, 769, 788
TaiI ACGT 1 cut(s) 159
TaqI TCGA 4 cut(s) 186, 195, 348, 836
TasI AATT 4 cut(s) 459, 529, 700, 741
TatI WGTACW 1 cut(s) 783
TauI GCSGC 1 cut(s) 221
TscAI CASTG 1 cut(s) 626
TseFI GTSAC 2 cut(s) 367, 712
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 2 cut(s) 367, 712
TspDTI ATGAA 2 cut(s) 738, 789
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 626
Tth111I GACNNNGTC 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 524
VpaK11BI GGWCC 4 cut(s) 232, 259, 291, 310
XapI RAATTY 1 cut(s) 700
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 1 cut(s) 384
ZrmI AGTACT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.