Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009037

Physical Location & Seq

Genomic Coordinates Forward (+)

40013008 .. 40015451

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGGATTCAGCCCCTTTCAGAAAACCCCACTTCCCAAATCCAGGGATGAACAACTCATCAGCGGTTCAGTTTCAACAGAACCCCATTACACAAGGTAAGCCTTACCTGCAATTTCTGTTTAAAGGTGTCTTCTTTGTGGTTTTGGTCGTGGCTCTGCCCTTGTTTCCTTCACAAGCTCCTGAATTTATCAACGATACGATACTCAACAAGTTCTGGGAGCTCATTCATCTTCTTTTCATTGGAATTGCTGTGTCTTATGGCTTGTTTAGCAGAAGAAATGTTGAGATGGGGATTGAAAACCAGTCAAATGTTGAAAATGTAGAGTCTTATATGCCTAGGATGTTTGATGGGTATGAAAATCCATGTGGGTCTGGTGAGAAGAAAGTTCTTGAGAGTTGGAGTTCTCAGAATTTTGTGGGTAACCATAAAAGTACTGTTTATTTTGATGCCCAATGCAAACCCAGATTGCCAAATTGTGGGGATGGTCTTGAAAATTCTTGTGGTTTTAAAAATAAGAATGTTGCTCAGGCTTGGAATTCTCAGTACTTTCAGGGTGAATCTATGGTTTTTGTAGCTCAACCAGATTATGCTGTTGATGAGTTTGCGAAACCCAAATCAGTAGTTGATGATGAGCCATTAGGATTGCCTGTTCGGAGTTTGAAATCGAGGGTTAAAAACCAGGAGAAGCCTGAGTTTGTTACTGGGAGTGAGCCTGGTTTTGGTTCAAAGGCTGCATCTAATAGTTTTGACTGGAGTAGGAATAGGAGCTTTGGTGATTTGGCTCCTATAAATTTACTAGAGAAATTCAATCAAGCTATGGCATCACCTTCCCCAGTTCTTCAGCGTTCGAGTTCTCGAAAGATGGAAAGGGGAAAAAGAGTAGGTAGTGCCCCTCGTCCTTCACATTTTAGGCCACTATCAGTTGATGAAGCTCAATTTGAGTTGCTAAAAACTCGGTCCTTCCGGTCCACATTGTCTTTCTCATCCGAAACTAGCTCCAAATCTTCTTCACCTGAAAAGGAGTACTCTTCTGTTAACTCTACAACTTCTGAGGTTTGCATCAATCGACAAATCAAGAGGGCTCGGCGTCAGTGGGAATCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

369

Amino Acids

41.54

Weight (kDa)

8.96

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60380
fragaria_vesca	FvH4_7g09850
malus_domestica	MD02G1216600.v1.1 MD07G1103700.v1.1
prunus_persica	Prupe.2G127500_v2.0.a1
pyrus_communis	pycom02g17820 pycom02g17830 pycom07g08460 pycom07g08740 pycom07g08880 pycom07g08900
rosa_chinensis	RchiOBHm_Chr1g0347391
rosa_laevigata	RLG00000028754
rosa_multiflora	Rmu_co8226457.1_g000001 Rmu_sc0002705.1_g000039
rosa_roxburghii	Rroxscaffold_4G00307860
rosa_rugosa	Rorug01G0186300
rosa_samantha	Rh1AG204000 Rh1BG169700 Rh1CG189100 Rh1DG200100
rosa_wichuraiana	Rw1G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccB7I	CCANNNNNTGG	1 cut(s)	479
AciI	CCGC	1 cut(s)	65
AcsI	RAATTY	6 cut(s)	185, 412, 496, 538, 793, 806
AcuI	CTGAAG	1 cut(s)	827
AcyI	GRCGYC	1 cut(s)	1090
AfaI	GTAC	3 cut(s)	436, 548, 1028
AfiI	CCNNNNNNNGG	3 cut(s)	44, 479, 722
AgsI	TTSAA	7 cut(s)	77, 299, 317, 494, 664, 729, 811
AjnI	CCWGG	3 cut(s)	43, 681, 715
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	7 cut(s)	179, 223, 578, 771, 818, 935, 999
AluI	AGCT	7 cut(s)	179, 223, 578, 771, 818, 935, 999
Alw21I	GWGCWC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	914
ApeKI	GCWGC	1 cut(s)	734
ApoI	RAATTY	6 cut(s)	185, 412, 496, 538, 793, 806
AspA2I	CCTAGG	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	960, 969
AsuHPI	GGTGA	5 cut(s)	389, 569, 788, 819, 1005
AvaII	GGWCC	2 cut(s)	960, 969
AvrII	CCTAGG	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	895
BanII	GRGCYC	2 cut(s)	225, 1087
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	4 cut(s)	283, 344, 479, 859
BciT130I	CCWGG	3 cut(s)	45, 683, 717
BfaI	CTAG	4 cut(s)	339, 800, 996, 1108
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	735
BlnI	CCTAGG	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	736
BmcAI	AGTACT	3 cut(s)	436, 548, 1028
Bme1390I	CCNGG	3 cut(s)	45, 683, 717
Bme18I	GGWCC	2 cut(s)	960, 969
BmgT120I	GGNCC	2 cut(s)	960, 969
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	3 cut(s)	45, 683, 717
BmrI	ACTGGG	2 cut(s)	714, 830
BmsI	GCATC	4 cut(s)	439, 746, 833, 1071
BmuI	ACTGGG	2 cut(s)	714, 830
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	775
Bpu10I	CCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	1090
BsaJI	CCNNGG	2 cut(s)	44, 338
BsaWI	WCCGGW	1 cut(s)	966
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 479, 722
Bse1I	ACTGG	4 cut(s)	304, 709, 758, 836
BseBI	CCWGG	3 cut(s)	45, 683, 717
BseDI	CCNNGG	2 cut(s)	44, 338
BseGI	GGATG	4 cut(s)	54, 348, 490, 986
BseLI	CCNNNNNNNGG	3 cut(s)	44, 479, 722
BseMII	CTCAG	5 cut(s)	422, 542, 557, 684, 1044
BseNI	ACTGG	4 cut(s)	304, 709, 758, 836
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	1 cut(s)	721
BshFI	GGCC	1 cut(s)	916
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	967
BslI	CCNNNNNNNGG	3 cut(s)	44, 479, 722
BsnI	GGCC	1 cut(s)	916
Bsp1286I	GDGCHC	3 cut(s)	225, 895, 1087
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	916
BspCNI	CTCAG	5 cut(s)	421, 541, 556, 685, 1045
BspLI	GGNNCC	1 cut(s)	786
BspMI	ACCTGC	1 cut(s)	117
BsrI	ACTGG	4 cut(s)	304, 709, 758, 836
BssECI	CCNNGG	2 cut(s)	44, 338
BssNI	GRCGYC	1 cut(s)	1090
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	3 cut(s)	45, 683, 717
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	1036
BstACI	GRCGYC	1 cut(s)	1090
BstDEI	CTNAG	5 cut(s)	408, 528, 543, 693, 1053
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	4 cut(s)	54, 348, 490, 986
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 270
BstNI	CCWGG	3 cut(s)	45, 683, 717
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	43, 681, 715
BstSLI	GKGCMC	1 cut(s)	895
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	916
BtsCI	GGATG	4 cut(s)	54, 348, 490, 986
BtsIMutI	CAGTG	1 cut(s)	1100
BveI	ACCTGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	960, 969
CseI	GACGC	1 cut(s)	1079
Csp6I	GTAC	3 cut(s)	435, 547, 1027
CviAII	CATG	1 cut(s)	366
CviQI	GTAC	3 cut(s)	435, 547, 1027
DdeI	CTNAG	5 cut(s)	408, 528, 543, 693, 1053
DraI	TTTAAA	2 cut(s)	124, 511
Eam1104I	CTCTTC	1 cut(s)	1036
EarI	CTCTTC	1 cut(s)	1036
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	2 cut(s)	225, 1087
Eco47I	GGWCC	2 cut(s)	960, 969
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	827
Eco91I	GGTNACC	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	3 cut(s)	43, 681, 715
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	2 cut(s)	225, 1087
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	1 cut(s)	369
FatI	CATG	1 cut(s)	365
Fnu4HI	GCNGC	1 cut(s)	735
FokI	GGATG	4 cut(s)	61, 355, 497, 973
FriOI	GRGCYC	2 cut(s)	225, 1087
Fsp4HI	GCNGC	1 cut(s)	735
FspBI	CTAG	4 cut(s)	339, 800, 996, 1108
GluI	GCNGC	1 cut(s)	735
GsuI	CTGGAG	1 cut(s)	775
HaeIII	GGCC	1 cut(s)	916
HapII	CCGG	1 cut(s)	967
HgaI	GACGC	1 cut(s)	1079
Hin1I	GRCGYC	1 cut(s)	1090
Hin1II	CATG	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HinfI	GANTC	4 cut(s)	8, 326, 560, 1100
HpaI	GTTAAC	1 cut(s)	1039
HpaII	CCGG	1 cut(s)	967
HphI	GGTGA	5 cut(s)	389, 569, 788, 819, 1005
Hpy166II	GTNNAC	2 cut(s)	972, 1039
Hpy188I	TCNGA	5 cut(s)	23, 411, 657, 991, 1054
Hpy188III	TCNNGA	5 cut(s)	182, 392, 491, 858, 1078
Hpy8I	GTNNAC	2 cut(s)	972, 1039
HpyAV	CCTTC	4 cut(s)	180, 840, 912, 973
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	4 cut(s)	112, 459, 737, 1062
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 270
HpyF3I	CTNAG	5 cut(s)	408, 528, 543, 693, 1053
Hsp92I	GRCGYC	1 cut(s)	1090
Hsp92II	CATG	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	1039
LmnI	GCTCC	5 cut(s)	184, 220, 768, 790, 1004
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	4 cut(s)	439, 746, 833, 1071
MaeI	CTAG	4 cut(s)	339, 800, 996, 1108
MaeIII	GTNAC	2 cut(s)	422, 700
MboII	GAAGA	8 cut(s)	124, 224, 288, 394, 833, 999, 1002, 1023
MhlI	GDGCHC	3 cut(s)	225, 895, 1087
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	4 cut(s)	663, 906, 1048, 1074
MseI	TTAA	4 cut(s)	123, 510, 675, 1038
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	967
MspR9I	CCNGG	3 cut(s)	45, 683, 717
MvaI	CCWGG	3 cut(s)	45, 683, 717
MwoI	GCNNNNNNNGC	2 cut(s)	109, 270
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	1 cut(s)	786
NmeAIII	GCCGAG	1 cut(s)	1066
PfeI	GAWTC	3 cut(s)	8, 560, 1100
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	736
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	43, 681, 715
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	3 cut(s)	43, 681, 715
PspN4I	GGNNCC	1 cut(s)	786
PspPI	GGNCC	2 cut(s)	960, 969
RsaI	GTAC	3 cut(s)	436, 548, 1028
RsaNI	GTAC	3 cut(s)	435, 547, 1027
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	4 cut(s)	123, 510, 675, 1038
SatI	GCNGC	1 cut(s)	735
Sau96I	GGNCC	2 cut(s)	960, 969
ScaI	AGTACT	3 cut(s)	436, 548, 1028
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	3 cut(s)	45, 683, 717
SduI	GDGCHC	3 cut(s)	225, 895, 1087
SfaNI	GCATC	4 cut(s)	439, 746, 833, 1071
SinI	GGWCC	2 cut(s)	960, 969
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	4 cut(s)	339, 800, 996, 1108
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	43, 681, 715
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	4 cut(s)	668, 851, 859, 1069
TaqII	GACCGA	1 cut(s)	948
TatI	WGTACW	3 cut(s)	434, 546, 1026
TfiI	GAWTC	3 cut(s)	8, 560, 1100
Tru1I	TTAA	4 cut(s)	123, 510, 675, 1038
Tru9I	TTAA	4 cut(s)	123, 510, 675, 1038
TscAI	CASTG	1 cut(s)	1100
TseI	GCWGC	1 cut(s)	734
TspDTI	ATGAA	5 cut(s)	65, 218, 229, 372, 945
TspRI	CASTG	1 cut(s)	1100
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	960, 969
XapI	RAATTY	6 cut(s)	185, 412, 496, 538, 793, 806
XmaJI	CCTAGG	1 cut(s)	338
XspI	CTAG	4 cut(s)	339, 800, 996, 1108
ZrmI	AGTACT	3 cut(s)	436, 548, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.