RchiOBHm_Chr1g0351671
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009106
Physical Location & Seq
Forward (+)
44930807 .. 44935975
5169 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGGGGAGGGGAAGAGTGGAGCTCAAGAGAATAGAGAACAAGATCAACCGCCAGGTGACTTTTTCAAAGAGGAGAAATGGTTTGCTCAAAAAAGCATATGAGCTCTCTGTGCTTTGTGATGCTGAGGTTGCCCTTATCGTCTTCTCTAGTCGAGGCAAGCTCTATGAGTTTTCAAGTGCTGGTAGTATGACCCAAACCCTTGAGAGATACCAACGAAGCAGCTTCAGTCCTCATGACAACTCCACCAAACGGGAAACAGAGTGCTGGTATGAAGAAGTCTCAAAACTGAGAGCTAAATATGACTCACTTCTGCGTACTCAAAGGCATTTGCTTGGGGAAGACCTTGGACCACTGAGTGTGAAGGAGTTGCAAAATCTTGAAAAACAGCTTGAAGGAGCTCTTACACAAGCCAGACAAAGGAAGACACAGATTATGATTGAACAAATGGAACACCTGCGCAAAAAGGAGCGACAGCTTGGAGACCTTAACCTGCAGCTTAGGGATAAGCTTCAGAAGGAGGGGGAAAATCTCAAAGCCATTCAAGACTTCTGGAGCTCCAATAGTGCAGCAACTGGGAATAGCAACTTCTTGCATTCTTCACAAGTCAGCCACATTGATCCCGCACCTGAACCCATCTTACAAATTGGGTACCATCACTATGTTGCTGCTGAATCCGCAGATGTTCCGAAGAGCATGGCCATGGCTGCCGAGACCAACTTCATCCAGGGATGGGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

246

Amino Acids

28.18

Weight (kDa)

9.11

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 1.2e-27 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 81 - 170 9.8e-28 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 462
Acc16I TGCGCA 1 cut(s) 458
Acc36I ACCTGC 2 cut(s) 462, 498
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AciI CCGC 3 cut(s) 49, 621, 675
AclWI GGATC 1 cut(s) 611
AcoI YGGCCR 1 cut(s) 696
AcuI CTGAAG 2 cut(s) 208, 494
AdeI CACNNNGTG 1 cut(s) 356
AfaI GTAC 2 cut(s) 316, 650
AfiI CCNNNNNNNGG 3 cut(s) 249, 417, 730
AgsI TTSAA 6 cut(s) 66, 174, 380, 392, 440, 542
AjnI CCWGG 2 cut(s) 51, 723
Alw21I GWGCWC 4 cut(s) 24, 105, 400, 557
Alw26I GTCTC 3 cut(s) 283, 474, 704
AlwI GGATC 1 cut(s) 611
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 5 cut(s) 219, 493, 566, 665, 704
Asp718I GGTACC 1 cut(s) 648
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 698
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 4 cut(s) 24, 105, 400, 557
BbsI GAAGAC 3 cut(s) 133, 345, 428
Bbv12I GWGCWC 4 cut(s) 24, 105, 400, 557
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 5 cut(s) 231, 505, 578, 652, 691
BccI CCATC 3 cut(s) 641, 660, 723
BciT130I CCWGG 2 cut(s) 53, 725
BcoDI GTCTC 3 cut(s) 283, 474, 704
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 491
BfuAI ACCTGC 2 cut(s) 462, 498
BisI GCNGC 5 cut(s) 220, 494, 567, 666, 705
BlsI GCNGC 5 cut(s) 221, 495, 568, 667, 706
Bme1390I CCNGG 2 cut(s) 53, 725
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 650
BmrFI CCNGG 2 cut(s) 53, 725
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 582
BpiI GAAGAC 3 cut(s) 133, 345, 428
BplI GAGNNNNNCTC 3 cut(s) 38, 144, 176
BpmI CTGGAG 1 cut(s) 571
Bpu10I CCTNAGC 2 cut(s) 123, 497
BpuEI CTTGAG 2 cut(s) 8, 221
BsaI GGTCTC 2 cut(s) 474, 704
BsaJI CCNNGG 3 cut(s) 343, 699, 724
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 417, 730
Bse1I ACTGG 1 cut(s) 577
BseBI CCWGG 2 cut(s) 53, 725
BseDI CCNNGG 3 cut(s) 343, 699, 724
BseGI GGATG 2 cut(s) 720, 734
BseLI CCNNNNNNNGG 3 cut(s) 249, 417, 730
BseMII CTCAG 3 cut(s) 114, 278, 344
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 5 cut(s) 231, 505, 578, 652, 691
BsgI GTGCAG 1 cut(s) 585
BshFI GGCC 1 cut(s) 698
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 4 cut(s) 24, 105, 400, 557
BslI CCNNNNNNNGG 3 cut(s) 249, 417, 730
BsmAI GTCTC 3 cut(s) 283, 474, 704
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 1 cut(s) 698
Bso31I GGTCTC 2 cut(s) 474, 704
Bsp1286I GDGCHC 4 cut(s) 24, 105, 400, 557
Bsp143I GATC 2 cut(s) 42, 616
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 3 cut(s) 49, 621, 675
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 3 cut(s) 115, 279, 345
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 650
BspMAI CTGCAG 1 cut(s) 495
BspMI ACCTGC 2 cut(s) 462, 498
BspPI GGATC 1 cut(s) 611
BspQI GCTCTTC 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 648
BspTNI GGTCTC 2 cut(s) 474, 704
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 3 cut(s) 343, 699, 724
BssMI GATC 2 cut(s) 42, 616
BssT1I CCWWGG 2 cut(s) 343, 699
Bst2UI CCWGG 2 cut(s) 53, 725
Bst6I CTCTTC 2 cut(s) 7, 683
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 4 cut(s) 123, 287, 353, 497
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 2 cut(s) 720, 734
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 2 cut(s) 45, 619
BstMAI GTCTC 3 cut(s) 283, 474, 704
BstMBI GATC 2 cut(s) 42, 616
BstMWI GCNNNNNNNGC 4 cut(s) 109, 128, 674, 704
BstNI CCWGG 2 cut(s) 53, 725
BstSCI CCNGG 2 cut(s) 51, 723
BstSFI CTRYAG 1 cut(s) 491
BstV1I GCAGC 5 cut(s) 231, 505, 578, 652, 691
BstV2I GAAGAC 3 cut(s) 133, 345, 428
BsuRI GGCC 1 cut(s) 698
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 2 cut(s) 720, 734
BtsIMutI CAGTG 1 cut(s) 350
BveI ACCTGC 2 cut(s) 462, 498
Cac8I GCNNGC 1 cut(s) 158
CaiI CAGNNNCTG 1 cut(s) 572
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 315, 649
CviAII CATG 3 cut(s) 233, 694, 700
CviQI GTAC 2 cut(s) 315, 649
DdeI CTNAG 4 cut(s) 123, 287, 353, 497
DpnI GATC 2 cut(s) 44, 618
DpnII GATC 2 cut(s) 42, 616
DraIII CACNNNGTG 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 7, 683
EarI CTCTTC 2 cut(s) 7, 683
Ecl136II GAGCTC 4 cut(s) 22, 103, 398, 555
Eco130I CCWWGG 2 cut(s) 343, 699
Eco24I GRGCYC 4 cut(s) 24, 105, 400, 557
Eco31I GGTCTC 2 cut(s) 474, 704
Eco47I GGWCC 1 cut(s) 347
Eco53kI GAGCTC 4 cut(s) 22, 103, 398, 555
Eco57I CTGAAG 2 cut(s) 208, 494
EcoICRI GAGCTC 4 cut(s) 22, 103, 398, 555
EcoRII CCWGG 2 cut(s) 51, 723
EcoT14I CCWWGG 2 cut(s) 343, 699
EcoT38I GRGCYC 4 cut(s) 24, 105, 400, 557
ErhI CCWWGG 2 cut(s) 343, 699
FaeI CATG 3 cut(s) 236, 697, 703
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 3 cut(s) 232, 693, 699
FauI CCCGC 1 cut(s) 628
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 5 cut(s) 220, 494, 567, 666, 705
FokI GGATG 1 cut(s) 707
FriOI GRGCYC 4 cut(s) 24, 105, 400, 557
Fsp4HI GCNGC 5 cut(s) 220, 494, 567, 666, 705
FspBI CTAG 1 cut(s) 147
FspI TGCGCA 1 cut(s) 458
GlaI GCGC 1 cut(s) 458
GluI GCNGC 5 cut(s) 220, 494, 567, 666, 705
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 1 cut(s) 698
HhaI GCGC 1 cut(s) 459
Hin1II CATG 3 cut(s) 236, 697, 703
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 2 cut(s) 302, 671
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 513, 687
Hpy188III TCNNGA 5 cut(s) 25, 233, 377, 542, 550
HpyAV CCTTC 3 cut(s) 355, 386, 508
HpyCH4V TGCA 4 cut(s) 370, 493, 566, 592
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 128, 674, 704
HpyF3I CTNAG 4 cut(s) 123, 287, 353, 497
Hsp92II CATG 3 cut(s) 236, 697, 703
HspAI GCGC 1 cut(s) 457
KpnI GGTACC 1 cut(s) 652
Kzo9I GATC 2 cut(s) 42, 616
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 5 cut(s) 19, 395, 466, 552, 560
Lsp1109I GCAGC 5 cut(s) 231, 505, 578, 652, 691
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 44, 618
MboI GATC 2 cut(s) 42, 616
MboII GAAGA 7 cut(s) 24, 133, 284, 350, 433, 588, 700
MhlI GDGCHC 4 cut(s) 24, 105, 400, 557
MlsI TGGCCA 1 cut(s) 698
MluCI AATT 1 cut(s) 642
MluNI TGGCCA 1 cut(s) 698
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 5 cut(s) 63, 118, 146, 240, 511
Mox20I TGGCCA 1 cut(s) 698
MscI TGGCCA 1 cut(s) 698
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 2 cut(s) 657, 698
Msp20I TGGCCA 1 cut(s) 698
MspR9I CCNGG 2 cut(s) 53, 725
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 2 cut(s) 53, 725
MwoI GCNNNNNNNGC 4 cut(s) 109, 128, 674, 704
NcoI CCATGG 1 cut(s) 699
NdeI CATATG 1 cut(s) 97
NdeII GATC 2 cut(s) 42, 616
NlaIII CATG 3 cut(s) 236, 697, 703
NlaIV GGNNCC 1 cut(s) 650
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 458
PagI TCATGA 1 cut(s) 232
PaqCI CACCTGC 1 cut(s) 462
PciSI GCTCTTC 1 cut(s) 683
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 1 cut(s) 671
PkrI GCNGC 5 cut(s) 221, 495, 568, 667, 706
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp124BI GAGCTC 4 cut(s) 24, 105, 400, 557
Psp6I CCWGG 2 cut(s) 51, 723
PspGI CCWGG 2 cut(s) 51, 723
PspN4I GGNNCC 1 cut(s) 650
PspPI GGNCC 1 cut(s) 347
PsrI GAACNNNNNNTAC 2 cut(s) 621, 653
PstI CTGCAG 1 cut(s) 495
PstNI CAGNNNCTG 1 cut(s) 572
RsaI GTAC 2 cut(s) 316, 650
RsaNI GTAC 2 cut(s) 315, 649
RseI CAYNNNNRTG 2 cut(s) 657, 698
SacI GAGCTC 4 cut(s) 24, 105, 400, 557
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 5 cut(s) 220, 494, 567, 666, 705
Sau3AI GATC 2 cut(s) 42, 616
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 53, 725
SduI GDGCHC 4 cut(s) 24, 105, 400, 557
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 2 cut(s) 657, 698
SmlI CTYRAG 2 cut(s) 23, 200
SmoI CTYRAG 2 cut(s) 23, 200
Sse9I AATT 1 cut(s) 642
SsiI CCGC 3 cut(s) 49, 621, 675
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 4 cut(s) 24, 105, 400, 557
StyD4I CCNGG 2 cut(s) 51, 723
StyI CCWWGG 2 cut(s) 343, 699
TaqI TCGA 1 cut(s) 151
TasI AATT 1 cut(s) 642
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 5 cut(s) 219, 493, 566, 665, 704
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 285, 709
TspRI CASTG 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 347
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.