RchiOBHm_Chr1g0359451

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007431
Physical Location & Seq
Forward (+)
51431083 .. 51432510
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 591 bp
ATGGACTGCCAAATTCTATTGATTCTGCCAAGGAGGGACTTTGTGAGAATCTTTAGCACTGGTGCAACATACATAAATGTGGCTGTGATGGAGGAAGGCCTAGGAAATGTACATATTGCAGTCAGATATCTACACAAGGCTTTGAAGCGTAAGCAAAAGTTACTCTGCCCAGATCATATTCAGATAGTGGCTAGGTACCACAATACTGCAATTGCACTCTCATTGATGAATGCATGCCCTTTAAGTTTTTGGATAAGCAGACAACTTTGCAAACTCTACGAGCATAGCTTGGTCCAAATGACCTATGACGCTGCTGCCTGGCTTGAGTACTTTGAGTCCTGGCTTGACGCAGCTCCATTCAACCCCTCATCATCCATTCATACTGCCCCGGTTTCCATGAACAATGCTATGTGTTTTGCTGTGGGTGCCGGGTGCTGTCCCGACTATTGCATCTGGTTAGTAAACATGATTCTTCACCCGGGGGCGGCTACCGTCTTTCCCTCAGTTAATCCAGTATGCACCTCCCTTCTCATACATACCCTTCTCAGAGGCAGGGTACCTATTGAGCACCAATTGCAAATGTCCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

196

Amino Acids

22.07

Weight (kDa)

8.39

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 195, 556
AccB1I GGYRCC 3 cut(s) 195, 425, 556
AciI CCGC 1 cut(s) 485
AcsI RAATTY 1 cut(s) 12
AfaI GTAC 4 cut(s) 111, 197, 329, 558
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 2 cut(s) 145, 361
AjnI CCWGG 3 cut(s) 317, 338, 584
AluBI AGCT 2 cut(s) 288, 353
AluI AGCT 2 cut(s) 288, 353
Alw21I GWGCWC 1 cut(s) 570
Ama87I CYCGRG 1 cut(s) 478
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 3 cut(s) 311, 314, 350
ApoI RAATTY 1 cut(s) 12
Asp718I GGTACC 2 cut(s) 195, 556
AspA2I CCTAGG 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 4 cut(s) 389, 430, 479, 480
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 1 cut(s) 292
AvrII CCTAGG 1 cut(s) 100
BanI GGYRCC 3 cut(s) 195, 425, 556
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 3 cut(s) 298, 301, 362
BccI CCATC 1 cut(s) 82
BciT130I CCWGG 3 cut(s) 319, 340, 586
BcnI CCSGG 4 cut(s) 389, 430, 479, 480
BfaI CTAG 2 cut(s) 101, 192
BisI GCNGC 4 cut(s) 312, 315, 351, 486
BlnI CCTAGG 1 cut(s) 100
BlsI GCNGC 4 cut(s) 313, 316, 352, 487
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 7 cut(s) 319, 340, 389, 430, 479, 480, 586
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 3 cut(s) 197, 427, 558
BmrFI CCNGG 7 cut(s) 319, 340, 389, 430, 479, 480, 586
BmsI GCATC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 4 cut(s) 389, 430, 479, 480
BsaJI CCNNGG 5 cut(s) 29, 100, 387, 478, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 64, 512
BseBI CCWGG 3 cut(s) 319, 340, 586
BseDI CCNNGG 5 cut(s) 29, 100, 387, 478, 479
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 516, 559
BseNI ACTGG 2 cut(s) 64, 512
BseXI GCAGC 3 cut(s) 298, 301, 362
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 3 cut(s) 195, 425, 556
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 3 cut(s) 389, 429, 479
BslFI GGGAC 2 cut(s) 50, 423
BslI CCNNNNNNNGG 1 cut(s) 484
BsmFI GGGAC 2 cut(s) 50, 423
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 570
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 485
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 2 cut(s) 515, 558
BspLI GGNNCC 3 cut(s) 197, 427, 558
BspT107I GGYRCC 3 cut(s) 195, 425, 556
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 2 cut(s) 64, 512
BssECI CCNNGG 5 cut(s) 29, 100, 387, 478, 479
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 2 cut(s) 29, 100
Bst2UI CCWGG 3 cut(s) 319, 340, 586
Bst4CI ACNGT 1 cut(s) 493
BstAPI GCANNNNNTGC 1 cut(s) 574
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 502, 545
BstF5I GGATG 1 cut(s) 371
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 425, 574
BstNI CCWGG 3 cut(s) 319, 340, 586
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 7 cut(s) 317, 338, 387, 428, 477, 478, 584
BstV1I GCAGC 3 cut(s) 298, 301, 362
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 371
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 292
Cfr9I CCCGGG 1 cut(s) 478
CseI GACGC 2 cut(s) 317, 356
Csp6I GTAC 4 cut(s) 110, 196, 328, 557
CviAII CATG 3 cut(s) 234, 397, 466
CviJI RGCY 9 cut(s) 83, 99, 140, 191, 288, 322, 343, 353, 488
CviKI_1 RGCY 9 cut(s) 83, 99, 140, 191, 288, 322, 343, 353, 488
CviQI GTAC 4 cut(s) 110, 196, 328, 557
DdeI CTNAG 2 cut(s) 502, 545
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 29, 100
Eco147I AGGCCT 1 cut(s) 99
Eco32I GATATC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 478
EcoRII CCWGG 3 cut(s) 317, 338, 584
EcoRV GATATC 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 29, 100
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 29, 100
FaeI CATG 3 cut(s) 237, 400, 469
FaqI GGGAC 2 cut(s) 50, 423
FatI CATG 3 cut(s) 233, 396, 465
Fnu4HI GCNGC 4 cut(s) 312, 315, 351, 486
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 4 cut(s) 312, 315, 351, 486
FspBI CTAG 2 cut(s) 101, 192
GluI GCNGC 4 cut(s) 312, 315, 351, 486
HaeIII GGCC 1 cut(s) 99
HapII CCGG 3 cut(s) 389, 429, 479
HgaI GACGC 2 cut(s) 317, 356
Hin1II CATG 3 cut(s) 237, 400, 469
HinfI GANTC 4 cut(s) 22, 48, 335, 469
HpaII CCGG 3 cut(s) 389, 429, 479
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 3 cut(s) 125, 183, 548
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 3 cut(s) 89, 536, 551
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 9 cut(s) 65, 119, 209, 215, 233, 270, 450, 519, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 574
HpyF3I CTNAG 2 cut(s) 502, 545
Hsp92II CATG 3 cut(s) 237, 400, 469
KpnI GGTACC 2 cut(s) 199, 560
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 3 cut(s) 298, 301, 362
LweI GCATC 1 cut(s) 459
MaeI CTAG 2 cut(s) 101, 192
MaeIII GTNAC 1 cut(s) 159
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 464
MfeI CAATTG 2 cut(s) 210, 572
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 3 cut(s) 12, 210, 572
MlyI GAGTC 1 cut(s) 344
MnlI CCTC 6 cut(s) 27, 85, 376, 511, 532, 542
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 2 cut(s) 242, 507
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 3 cut(s) 389, 429, 479
MspR9I CCNGG 7 cut(s) 319, 340, 389, 430, 479, 480, 586
MunI CAATTG 2 cut(s) 210, 572
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 3 cut(s) 319, 340, 586
MwoI GCNNNNNNNGC 2 cut(s) 425, 574
NciI CCSGG 4 cut(s) 389, 430, 479, 480
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 237, 400, 469
NlaIV GGNNCC 3 cut(s) 197, 427, 558
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 237
PaeI GCATGC 1 cut(s) 237
PceI AGGCCT 1 cut(s) 99
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 22, 48, 469
PkrI GCNGC 4 cut(s) 313, 316, 352, 487
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Psp6I CCWGG 3 cut(s) 317, 338, 584
PspGI CCWGG 3 cut(s) 317, 338, 584
PspN4I GGNNCC 3 cut(s) 197, 427, 558
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 4 cut(s) 111, 197, 329, 558
RsaNI GTAC 4 cut(s) 110, 196, 328, 557
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 2 cut(s) 242, 507
SatI GCNGC 4 cut(s) 312, 315, 351, 486
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 7 cut(s) 319, 340, 389, 430, 479, 480, 586
SduI GDGCHC 1 cut(s) 570
SetI ASST 7 cut(s) 197, 290, 305, 355, 524, 562, 590
SfaNI GCATC 1 cut(s) 459
SinI GGWCC 1 cut(s) 292
SmaI CCCGGG 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 237
Sse9I AATT 3 cut(s) 12, 210, 572
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 1 cut(s) 485
SspMI CTAG 2 cut(s) 101, 192
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 7 cut(s) 317, 338, 387, 428, 477, 478, 584
StyI CCWWGG 2 cut(s) 29, 100
TaaI ACNGT 1 cut(s) 493
TasI AATT 3 cut(s) 12, 210, 572
TatI WGTACW 2 cut(s) 109, 327
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 3 cut(s) 22, 48, 469
Tru1I TTAA 2 cut(s) 242, 507
Tru9I TTAA 2 cut(s) 242, 507
TscAI CASTG 1 cut(s) 64
TseI GCWGC 3 cut(s) 311, 314, 350
TspDTI ATGAA 3 cut(s) 242, 368, 413
TspMI CCCGGG 1 cut(s) 478
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 237
XmaI CCCGGG 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 100
XspI CTAG 2 cut(s) 101, 192
ZrmI AGTACT 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.