RchiOBHm_Chr1g0362971

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
54516027 .. 54524267
8241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4839 bp
ATGGGTGATGTTAAGATACCAAATTGGCTTAAAGGGTTGCCATTGGCGCCCGAGTTTCATCCAACCCATACCGAATTTGCTGACCCAATTGCTTATATATCGAAAATTGAGAAGGAAGCCAGTGAATTTGGTATTTGCAAGATTATCCCACCATTGCCGAAACCTTCCAAGAGATATGTTTTTAGTAACTTGAATAAGTCACTTGCTAAGCGGCCCGAATTGGGTTCTGATTTGATCCCTGGGAATGATGGTGATGCTGTGAAAGTGGGTTCTGGGGATGGTAGTAATGATGGGGAGGTTAGGGCAGTGTTTACCACTAGGCACCAAGAATTGGGGCAGACTGTGAAAAGAGCGAAAGGGGCGGGTGTTCAGGATCCGCCGCCATCGGGTGTTGATAAGCAAGTGTGGCAAAGTGGGGAAGTTTATACTTTAGAGCAGTTTGAGTCCAAGTCCAGAGCTTTCGCAAGGAGCATTTTAGGTACAATTAGAGATGTTTCTCCATTGGTTATAGAGGCAATGTTTTGGAAGGCAGCTTCTGAGAAGCCGATATATATTGAGTATGCCAATGATGTGCCTGGGTCTGCTTTTGAAGAACCGGAGGGTCTGTTGTGCTATTCACGTAGGCGGAGGAGGAAGAGGAATTCCTACCACAGAAGTGGACCAAACTCTGATAGCAAGAAAAGTGAAATGATTAGCAGTTGTGAAAGAAAGTCCCAAAATGGTGAAGTTGAGGATGCTTCCCCTAAAAATGTTTCACTTACATCCGTGGAGGTACCCAAATCATCTGCTTTGCCAGGAATAGTGTCAACAGATGAAACTTCTCAATCTTCTAGGAAAAAAAGTCAAAATTCTTCTTGTGACGTGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCATGGAACTTACAAGTCATTGCACGCTCACCTGGTTCACTTACTCGTTTCATGCCGGATGATATCCCAGGTGTTACTTCTCCTATGGTTTACATCGGCATGTTGTTCAGCTGGTTTGCTTGGCATGTTGAAGATCATGAGCTTCACAGCATGAATTTTCTGCACAATGGATCTGCAAAGACTTGGTATTCTGTTCCTGGAGATTATGCATTTGCTTTTGAGGAACTTATTCGCACTGAGGCGTATGGTGGTACTGCTGACCGTCTGGCTGCTCTCTCACTATTGGGTAATAAAACAACTTTAATGTCACCTGAGGTAGTTATCGCATCGGGAATTCCTTGTTGCAGGTTAATACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGGGCTTACCATGTAGGATTCAGTCACGGTTTCAATTGTGGAGAAGCTGCTAACTTTGGAACACCACAATGGCTTAAAGTGGCTAAAGAAGCTGCAGTACGTAGAGCTGCTATGAATTATCTTCCTATGCTCTCCCATCAACAGCTGCTATACCTCTCGACTATGTCTTTTGTTTCAAGAGTGCCGAAGTCCCTACTACCAGGTGTGCGGAGTTCCCGTATGAGAGATAGGCAAAAGGAAGACAGAGAGCTATCAGTAAAGAAGGCTTTTATTGAAGATATTTTAAATGAGAACGATGTGTTATCTGCTCTTCTTGGGAAAGAATCAAGTTGCCGTGCAGTATTATGGAATCCTGATTTACTTCCAAATGCAAGTAAAGAGTCTTCCATACCCACTGCAAGTGCTCCTGTTGATACGAATTCAAAAGAAAATGCTACGGATACTCAGGGTGGAAATAGTACTAATGATCAGAACTTTCTGGTAGATGAAATGAGTTTGTACATGGAAAATCTTAACGACTTATATTTGGGCAGTGATGATTTGTCTGATGACTTCCAAGTTGACTCAGGAACATTGGCATGCGTGGCATGTGGGATACTTGGGTTTCCATTTATGTCTGTGGTGCAACCATCTGAGAAGGCGTCAATGGAACTTCAGCCTGAATGTATTTTGGCTGAAGAATTGCCTGGAGTTTCAGGCAATTCTCATATCTCTCCAGAGCATAGCAAATCTTTCAAAGGCTGTGCTACAGAGGATCTCTCTCCTATTTCCAATGCTTTTCCACATGCAAGGGATCCCGTCTTACCTTGCACAGCAAGGTTTAACAACTGTTGGAATACTGTTGATAAATTTCTGAGACCACGGAGTTTCTGTCTTGAACATGCTGTTGAAACTTTGGAGCTGTTGCAGTGTAAAGGTGGAGCAAACATGCTTGTGATTTGCCATTCTGACTATCAGAAAATAAAGGCTCCTGCTGCAGCCATTGCAGAAGAAATTGGTTGCCCTTTTAACTATAACGAGGTTCCATTGGACATTGCCTCAAATGAAGATTTGAACTTGATAGATCTTGCTGTCGATGATGGACGTGATGAATGTGGAGAAGATTGGACCTCAAAGTTGGGTATCAACCTACGGCACTGTGTCAAGGTCAGAAAAAGTTCTTCCTCGAAGCGAGTCCAGCATGCATTGGCATTGGGTGAAGTGTTCTCGAAACAAAGTCGCAGCTCAGAATTTCTGGCCGTTAACTGGAAATCTAGAAGATCTCGGACGAAGAAGGTTTATCTAGATGCCCCTTACAAACAATGTGACAGCATTGACAAAAAGAAGGAAGAAGTGGTGGAGGCAAAGTCAGCAGATGCCACCTCTTTTAAAAGGGAAGCAAAAATAATTCAATATTCAAGAAGGAATAAGCGAAAACCAAGTACTTCTACGGGAGCAGGTAGGTTTGTTGAGCACCCCGGTACTTCTGAAGAGCTTGATAAACATAGCAGGAGGGCATCAGATAATAGCATTTACAACAATGGGAAGTCCACCAGCATATGTGCAAGGTTGGACTCATTTACATCAGATAGTACTGAAATGCATCCTGATGTCCAGATGCTTGAAGCCACCAGGGATATCTGTTTGGACTCTACTCTTTCACAAGTTGCAGATACAGTTGCCTTAACAGCTGGAAGTGCTGATGCACAGATTGAAAATCGCAGTTTGGAAGAGAGGAACATGAATGGTGGAGGTTGTAATCTAGCAGCAAGCGAGTCTGATATGCAAGATGAGATCAAGATCCTTAAAGAAGCCAGGCAAAACAACTCAATCATTCCACTTGTCATTGCACGTGATGAAAGGTCTGAAAAGCATAGAGGGGAACAGGAAAACGAAAAATTGAACAAAAATGATGACAATTGTAATCTGGTGTCTGAAGGGCAGTCCCAACTTTGGTCTCAGGAGGATGTTCTTATGAATGTGGTTTCTGTTTTCACCAAATCAACAAACTTATCTGCTGCTGACTCAATTGTGACAAGTTCTGAGGAACAGATAGTCAATGCAGTCATTGAGAAATCTTGCGTGAATAGTGAAGTTTGTGAATCTATGACTTTGGGTGATGAAGTGCAGCAAGAAATCCAAACTACTAACAGAAGTAACGACAAGGCACCGGTTTCATGTAGTTCCACGCTGTTGAATGATCCAACCTTTGCTGCAGCTGAATGTCATGTTGAATTTGACAGAGAGACTCATATTGTAGAAGAATTTAGCAATGTTGTTTCTTCAGAATTCAAACCAGAAGAAGATATTGAGATTCCAAAAGGAAGATATGAGAAACCCAGTTTAAGTCCTACCAGACGAGTCGGTCAACACTCTCCTGCTTCTACAGACAGATTGTCTGGAGTTGCAAAGGCGTTCTGTGCTGCAGCAGATTTTCAGCCAGGCCCAACTTCACATGGTGAAGAATTTCAGGCAGCAGATAGAACTAGTGAGGGGGAATACATCTCTACTTCAATGATAAAGATGGAAGAAACTCATCCCTCGTCATTGGAAGAATCTTCTGAAGTTCCAAGAGGAAGCTCTTTGGAGGAAGGCACGAGCAGTGGCGTGACTTCAGCCACTCTAGTTCAGCAAGATGCCCAAACTACAAATGCAGCTGTGGAAGCGCCCAGTCATAATTTTGTTGTTCGAGGAGAAAATCAGCCTATACCTGTCTCGGTTGAAGATGAAGTTCCCAGAGTGAGCTGTGCAATAGATGTGACCTTGGATGATAAAGAACGGTGGACAAACTCGTACAGTAATAAGGAACTCATTGCTAGTCATGATACTTCAAAATGCGAGCCGTCTCGTGTTACAATTAAAACATACTTTAGAGTTAAAAGAGGGAGCCGTGCTGCTCGAGAATTGCACAACGGTACTGAAGTTTGTATATCACAACATGATAGAGAGCTGGGAAACATTGAGCCTTCCATTTTAGACCCCAGACCAAGTCCTGAAATTGGAAGTAAAAGAAAGAGAGGAGTGGGGCAGAAAATGGATGACAACTCCAACTTCAATGGATATATTAGGGGGCCATGTGAAGGTCTGCGACCAAGGGCTGCGAAGGATGCAACAGTTAGTAGGATAGACATCCACAACCAGGTCGAAGAGCAGCCAGTGGCAAAGAAGGTGAAGAGACCTTCAGATGTTCCTGTTCCTCCCAAGGATAAGAAGAAAGAGCAAGTAAGGAAGCCCCACAGCTGCAACCTAGGGGGCTGTAGCATGAGTTTTCAGACAAAGGAGGAGTTAATGGTGCACAAGCGTAACCGCTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGTTGCCACAAGTATGCAATGGTTCACAGCCGTGTGCATGATAGTGCTAGGCCCTTCAAGTGCCCATGGAAGGGTTGCTCCATGTCATTCAAGTGGGCATGGGCCCAGACTGAGCATATACGAGTGCACACTGGAGAAAAACCATACAAGTGCAAGGTGGACGGCTGTGGCCTCTCTTTCAGGTTTGTATCAGATTTTAGCCGTCACAGACGGAAAACAGGGCATTATGTGAGCTAA

Protein Analysis

1612

Amino Acids

178.22

Weight (kDa)

6.03

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 17 - 50 5.4e-15 jmjN domain
JmjC PF02373 329 - 447 5.4e-34 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3627
Acc36I ACCTGC 2 cut(s) 1233, 2711
Acc65I GGTACC 1 cut(s) 772
AccB1I GGYRCC 4 cut(s) 46, 321, 772, 3430
AccB7I CCANNNNNTGG 1 cut(s) 331
AciI CCGC 7 cut(s) 211, 362, 377, 380, 625, 1492, 4570
AclWI GGATC 9 cut(s) 229, 368, 381, 1075, 2046, 2072, 2085, 3058, 3458
AcoI YGGCCR 1 cut(s) 2520
AcuI CTGAAG 9 cut(s) 1922, 1980, 2772, 3219, 3531, 3846, 3861, 4203, 4428
AcvI CACGTG 1 cut(s) 3116
AcyI GRCGYC 2 cut(s) 47, 1925
AdeI CACNNNGTG 1 cut(s) 3722
AgeI ACCGGT 1 cut(s) 3433
AhdI GACNNNNNGTC 1 cut(s) 3658
AhlI ACTAGT 1 cut(s) 3749
AjiI CACGTC 2 cut(s) 862, 2369
AleI CACNNNNGTG 2 cut(s) 654, 4632
Alw21I GWGCWC 4 cut(s) 1690, 2739, 4560, 4731
Alw26I GTCTC 6 cut(s) 2134, 3225, 3503, 3982, 4113, 4432
Alw44I GTGCAC 2 cut(s) 4556, 4727
AlwI GGATC 9 cut(s) 229, 368, 381, 1075, 2046, 2072, 2085, 3058, 3458
AlwNI CAGNNNCTG 1 cut(s) 536
Ama87I CYCGRG 2 cut(s) 50, 4161
AoxI GGCC 7 cut(s) 212, 2520, 3706, 4334, 4652, 4704, 4771
ApaI GGGCCC 1 cut(s) 4708
ApaLI GTGCAC 2 cut(s) 4556, 4727
AsiGI ACCGGT 1 cut(s) 3433
Asp700I GAANNNNTTC 3 cut(s) 1125, 2440, 3729
Asp718I GGTACC 1 cut(s) 772
AspA2I CCTAGG 1 cut(s) 4510
AspLEI GCGC 2 cut(s) 49, 3931
AspS9I GGNCC 8 cut(s) 213, 659, 2391, 3707, 4334, 4653, 4704, 4705
AsuC2I CCSGG 1 cut(s) 2742
AvaI CYCGRG 2 cut(s) 50, 4161
AvaII GGWCC 2 cut(s) 659, 2391
AvrII CCTAGG 1 cut(s) 4510
AxyI CCTNAGG 1 cut(s) 1209
BaeGI GKGCMC 4 cut(s) 4560, 4667, 4708, 4731
BaeI ACNNNNGTAYC 4 cut(s) 1871, 1904, 4170, 4203
BamHI GGATCC 2 cut(s) 373, 2077
BanI GGYRCC 4 cut(s) 46, 321, 772, 3430
BanII GRGCYC 1 cut(s) 4708
BarI GAAGNNNNNNTAC 4 cut(s) 1365, 1397, 1651, 1683
BauI CACGAG 2 cut(s) 3859, 4110
BbrPI CACGTG 1 cut(s) 3116
BbsI GAAGAC 2 cut(s) 1530, 1659
Bbv12I GWGCWC 4 cut(s) 1690, 2739, 4560, 4731
BccI CCATC 8 cut(s) 242, 272, 284, 391, 1428, 1921, 2357, 3781
BceAI ACGGC 8 cut(s) 1602, 2432, 2507, 4090, 4137, 4617, 4780, 4788
BciVI GTATCC 2 cut(s) 1717, 1872
BclI TGATCA 1 cut(s) 1750
BcnI CCSGG 1 cut(s) 2742
BcoDI GTCTC 6 cut(s) 2134, 3225, 3503, 3982, 4113, 4432
BcuI ACTAGT 1 cut(s) 3749
BfmI CTRYAG 7 cut(s) 1377, 2031, 2259, 3477, 3648, 3687, 4519
BfoI RGCGCY 2 cut(s) 50, 3932
BfuAI ACCTGC 2 cut(s) 1233, 2711
BfuI GTATCC 2 cut(s) 1717, 1872
BglII AGATCT 2 cut(s) 2347, 2543
BlnI CCTAGG 1 cut(s) 4510
BlpI GCTNAGC 1 cut(s) 207
BmcAI AGTACT 3 cut(s) 1744, 2707, 2857
Bme18I GGWCC 2 cut(s) 659, 2391
BmeRI GACNNNNNGTC 1 cut(s) 3658
BmeT110I CYCGRG 2 cut(s) 50, 4161
BmgBI CACGTC 2 cut(s) 862, 2369
BmgT120I GGNCC 8 cut(s) 213, 659, 2391, 3707, 4334, 4653, 4704, 4705
BmrI ACTGGG 2 cut(s) 3597, 3927
BmuI ACTGGG 2 cut(s) 3597, 3927
BpiI GAAGAC 2 cut(s) 1530, 1659
BplI GAGNNNNNCTC 2 cut(s) 2027, 2059
BpmI CTGGAG 5 cut(s) 1116, 1983, 1992, 3684, 4755
Bpu1102I GCTNAGC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 2742
BsaAI YACGTR 3 cut(s) 620, 1385, 3116
BsaBI GATNNNNATC 2 cut(s) 3062, 4391
BsaHI GRCGYC 2 cut(s) 47, 1925
BsaI GGTCTC 3 cut(s) 2134, 3225, 4432
BsaWI WCCGGW 2 cut(s) 595, 3433
BsaXI ACNNNNNCTCC 8 cut(s) 590, 620, 1486, 1516, 2140, 2170, 2615, 2645
Bse118I RCCGGY 1 cut(s) 3433
Bse1I ACTGG 6 cut(s) 120, 2534, 3603, 3933, 4418, 4738
Bse21I CCTNAGG 1 cut(s) 1209
Bse3DI GCAATG 9 cut(s) 152, 522, 915, 2265, 2316, 3108, 3541, 4074, 4626
Bse8I GATNNNNATC 2 cut(s) 3062, 4391
BseJI GATNNNNATC 2 cut(s) 3062, 4391
BseMI GCAATG 9 cut(s) 152, 522, 915, 2265, 2316, 3108, 3541, 4074, 4626
BseNI ACTGG 6 cut(s) 120, 2534, 3603, 3933, 4418, 4738
BseRI GAGGAG 4 cut(s) 643, 3969, 4296, 4559
BseSI GKGCMC 4 cut(s) 4560, 4667, 4708, 4731
BseYI CCCAGC 1 cut(s) 4213
BsgI GTGCAG 3 cut(s) 1043, 1641, 3410
BshFI GGCC 7 cut(s) 214, 2522, 3708, 4336, 4654, 4706, 4773
BshNI GGYRCC 4 cut(s) 46, 321, 772, 3430
BshTI ACCGGT 1 cut(s) 3433
BsiHKAI GWGCWC 4 cut(s) 1690, 2739, 4560, 4731
BsiHKCI CYCGRG 2 cut(s) 50, 4161
BsiSI CCGG 4 cut(s) 596, 953, 2742, 3434
BslFI GGGAC 3 cut(s) 697, 1459, 3193
BsmAI GTCTC 6 cut(s) 2134, 3225, 3503, 3982, 4113, 4432
BsmBI CGTCTC 1 cut(s) 4113
BsmFI GGGAC 3 cut(s) 697, 1459, 3193
BsnI GGCC 7 cut(s) 214, 2522, 3708, 4336, 4654, 4706, 4773
Bso31I GGTCTC 3 cut(s) 2134, 3225, 4432
BsoBI CYCGRG 2 cut(s) 50, 4161
Bsp120I GGGCCC 1 cut(s) 4704
Bsp1286I GDGCHC 6 cut(s) 1690, 2739, 4560, 4667, 4708, 4731
Bsp1407I TGTACA 1 cut(s) 1782
Bsp1720I GCTNAGC 1 cut(s) 207
Bsp19I CCATGG 2 cut(s) 899, 4667
BspACI CCGC 7 cut(s) 211, 362, 377, 380, 625, 1492, 4570
BspANI GGCC 7 cut(s) 214, 2522, 3708, 4336, 4654, 4706, 4773
BspHI TCATGA 2 cut(s) 1033, 4084
BspMAI CTGCAG 4 cut(s) 1381, 2263, 3481, 3691
BspMI ACCTGC 2 cut(s) 1233, 2711
BspPI GGATC 9 cut(s) 229, 368, 381, 1075, 2046, 2072, 2085, 3058, 3458
BspQI GCTCTTC 3 cut(s) 1599, 2748, 4404
BspT107I GGYRCC 4 cut(s) 46, 321, 772, 3430
BspTNI GGTCTC 3 cut(s) 2134, 3225, 4432
BsrDI GCAATG 9 cut(s) 152, 522, 915, 2265, 2316, 3108, 3541, 4074, 4626
BsrFI RCCGGY 1 cut(s) 3433
BsrGI TGTACA 1 cut(s) 1782
BsrI ACTGG 6 cut(s) 120, 2534, 3603, 3933, 4418, 4738
BssAI RCCGGY 1 cut(s) 3433
BssNI GRCGYC 2 cut(s) 47, 1925
BssSI CACGAG 2 cut(s) 3859, 4110
BssT1I CCWWGG 7 cut(s) 899, 1283, 4026, 4355, 4464, 4510, 4667
Bst2BI CACGAG 2 cut(s) 3859, 4110
Bst6I CTCTTC 6 cut(s) 629, 1599, 2748, 2988, 4404, 4430
BstACI GRCGYC 2 cut(s) 47, 1925
BstAPI GCANNNNNTGC 1 cut(s) 2267
BstAUI TGTACA 1 cut(s) 1782
BstBAI YACGTR 3 cut(s) 620, 1385, 3116
BstC8I GCNNGC 5 cut(s) 922, 1864, 2466, 3034, 4103
BstDSI CCRYGG 4 cut(s) 765, 899, 2144, 4667
BstH2I RGCGCY 2 cut(s) 50, 3932
BstHHI GCGC 2 cut(s) 49, 3931
BstMAI GTCTC 6 cut(s) 2134, 3225, 3503, 3982, 4113, 4432
BstNSI RCATGY 8 cut(s) 1000, 1025, 1866, 1875, 2072, 2168, 2215, 2468
BstSFI CTRYAG 7 cut(s) 1377, 2031, 2259, 3477, 3648, 3687, 4519
BstSLI GKGCMC 4 cut(s) 4560, 4667, 4708, 4731
BstSNI TACGTA 1 cut(s) 1385
BstV2I GAAGAC 2 cut(s) 1530, 1659
BstX2I RGATCY 7 cut(s) 373, 1067, 2038, 2077, 2347, 2543, 3063
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 7 cut(s) 373, 1067, 2038, 2077, 2347, 2543, 3063
Bsu36I CCTNAGG 1 cut(s) 1209
BsuI GTATCC 2 cut(s) 1717, 1872
BsuRI GGCC 7 cut(s) 214, 2522, 3708, 4336, 4654, 4706, 4773
BtgI CCRYGG 4 cut(s) 765, 899, 2144, 4667
BtrI CACGTC 2 cut(s) 862, 2369
BtsI GCAGTG 5 cut(s) 312, 1677, 1822, 2198, 3871
BveI ACCTGC 2 cut(s) 1233, 2711
Cac8I GCNNGC 5 cut(s) 922, 1864, 2466, 3034, 4103
CaiI CAGNNNCTG 1 cut(s) 536
CciI TCATGA 2 cut(s) 1033, 4084
CfoI GCGC 2 cut(s) 49, 3931
Cfr10I RCCGGY 1 cut(s) 3433
Cfr13I GGNCC 8 cut(s) 213, 659, 2391, 3707, 4334, 4653, 4704, 4705
CseI GACGC 1 cut(s) 1914
CsiI ACCWGGT 3 cut(s) 928, 1483, 4401
CspAI ACCGGT 1 cut(s) 3433
DinI GGCGCC 1 cut(s) 48
DraI TTTAAA 2 cut(s) 1569, 2653
DraIII CACNNNGTG 1 cut(s) 3722
DrdI GACNNNNNNGTC 1 cut(s) 3627
DriI GACNNNNNGTC 1 cut(s) 3658
DseDI GACNNNNNNGTC 1 cut(s) 3627
EaeI YGGCCR 1 cut(s) 2520
Eam1104I CTCTTC 6 cut(s) 629, 1599, 2748, 2988, 4404, 4430
Eam1105I GACNNNNNGTC 1 cut(s) 3658
EarI CTCTTC 6 cut(s) 629, 1599, 2748, 2988, 4404, 4430
EciI GGCGGA 2 cut(s) 366, 640
Eco105I TACGTA 1 cut(s) 1385
Eco130I CCWWGG 7 cut(s) 899, 1283, 4026, 4355, 4464, 4510, 4667
Eco24I GRGCYC 1 cut(s) 4708
Eco31I GGTCTC 3 cut(s) 2134, 3225, 4432
Eco32I GATATC 2 cut(s) 961, 2902
Eco47I GGWCC 2 cut(s) 659, 2391
Eco57I CTGAAG 9 cut(s) 1922, 1980, 2772, 3219, 3531, 3846, 3861, 4203, 4428
Eco72I CACGTG 1 cut(s) 3116
Eco81I CCTNAGG 1 cut(s) 1209
Eco88I CYCGRG 2 cut(s) 50, 4161
EcoO109I RGGNCCY 1 cut(s) 4653
EcoRI GAATTC 4 cut(s) 640, 1230, 1702, 3551
EcoRV GATATC 2 cut(s) 961, 2902
EcoT14I CCWWGG 7 cut(s) 899, 1283, 4026, 4355, 4464, 4510, 4667
EcoT22I ATGCAT 3 cut(s) 1108, 2470, 2868
EcoT38I GRGCYC 1 cut(s) 4708
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 7 cut(s) 899, 1283, 4026, 4355, 4464, 4510, 4667
Esp3I CGTCTC 1 cut(s) 4113
FaqI GGGAC 3 cut(s) 697, 1459, 3193
FauI CCCGC 1 cut(s) 355
FauNDI CATATG 1 cut(s) 2822
FbaI TGATCA 1 cut(s) 1750
FriOI GRGCYC 1 cut(s) 4708
GlaI GCGC 2 cut(s) 48, 3930
GsaI CCCAGC 1 cut(s) 4217
GsuI CTGGAG 5 cut(s) 1116, 1983, 1992, 3684, 4755
HaeII RGCGCY 2 cut(s) 50, 3932
HaeIII GGCC 7 cut(s) 214, 2522, 3708, 4336, 4654, 4706, 4773
HapII CCGG 4 cut(s) 596, 953, 2742, 3434
HgaI GACGC 1 cut(s) 1914
HhaI GCGC 2 cut(s) 49, 3931
Hin1I GRCGYC 2 cut(s) 47, 1925
Hin6I GCGC 2 cut(s) 47, 3929
HinP1I GCGC 2 cut(s) 47, 3929
HincII GTYRAC 4 cut(s) 807, 1846, 2527, 3632
HindII GTYRAC 4 cut(s) 807, 1846, 2527, 3632
HindIII AAGCTT 1 cut(s) 884
HpaI GTTAAC 1 cut(s) 2527
HpaII CCGG 4 cut(s) 596, 953, 2742, 3434
HpyCH4IV ACGT 5 cut(s) 619, 861, 1384, 2368, 3115
HpySE526I ACGT 5 cut(s) 619, 861, 1384, 2368, 3115
Hsp92I GRCGYC 2 cut(s) 47, 1925
HspAI GCGC 2 cut(s) 47, 3929
KasI GGCGCC 1 cut(s) 46
KpnI GGTACC 1 cut(s) 776
Ksp22I TGATCA 1 cut(s) 1750
KspAI GTTAAC 1 cut(s) 2527
LguI GCTCTTC 3 cut(s) 1599, 2748, 4404
LmnI GCTCC 8 cut(s) 468, 1693, 2182, 2204, 2257, 2717, 4149, 4685
MabI ACCWGGT 3 cut(s) 928, 1483, 4401
MaeII ACGT 5 cut(s) 619, 861, 1384, 2368, 3115
MfeI CAATTG 4 cut(s) 87, 1318, 3181, 3291
MflI RGATCY 7 cut(s) 373, 1067, 2038, 2077, 2347, 2543, 3063
MhlI GDGCHC 6 cut(s) 1690, 2739, 4560, 4667, 4708, 4731
Mly113I GGCGCC 1 cut(s) 47
MmeI TCCRAC 6 cut(s) 86, 860, 2096, 2814, 3491, 4335
Mph1103I ATGCAT 3 cut(s) 1108, 2470, 2868
MroXI GAANNNNTTC 3 cut(s) 1125, 2440, 3729
MspA1I CMGCKG 7 cut(s) 1008, 1429, 2954, 3482, 3920, 4503, 4572
MspI CCGG 4 cut(s) 596, 953, 2742, 3434
MunI CAATTG 4 cut(s) 87, 1318, 3181, 3291
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 1 cut(s) 2742
NcoI CCATGG 2 cut(s) 899, 4667
NdeI CATATG 1 cut(s) 2822
NsiI ATGCAT 3 cut(s) 1108, 2470, 2868
NspI RCATGY 8 cut(s) 1000, 1025, 1866, 1875, 2072, 2168, 2215, 2468
OliI CACNNNNGTG 2 cut(s) 654, 4632
PaeI GCATGC 2 cut(s) 1866, 2468
PaeR7I CTCGAG 1 cut(s) 4161
PagI TCATGA 2 cut(s) 1033, 4084
PasI CCCWGGG 1 cut(s) 239
PciSI GCTCTTC 3 cut(s) 1599, 2748, 4404
PdmI GAANNNNTTC 3 cut(s) 1125, 2440, 3729
PfeI GAWTC 7 cut(s) 1255, 1302, 1607, 1633, 3365, 3577, 3818
PflFI GACNNNGTC 2 cut(s) 1447, 4251
PflMI CCANNNNNTGG 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 1093
PinAI ACCGGT 1 cut(s) 3433
PluTI GGCGCC 1 cut(s) 50
PmaCI CACGTG 1 cut(s) 3116
PmlI CACGTG 1 cut(s) 3116
Ppu21I YACGTR 3 cut(s) 620, 1385, 3116
PspCI CACGTG 1 cut(s) 3116
PspFI CCCAGC 1 cut(s) 4213
PspOMI GGGCCC 1 cut(s) 4704
PspPI GGNCC 8 cut(s) 213, 659, 2391, 3707, 4334, 4653, 4704, 4705
PstI CTGCAG 4 cut(s) 1381, 2263, 3481, 3691
PstNI CAGNNNCTG 1 cut(s) 536
PsuI RGATCY 7 cut(s) 373, 1067, 2038, 2077, 2347, 2543, 3063
PsyI GACNNNGTC 2 cut(s) 1447, 4251
PvuII CAGCTG 6 cut(s) 1008, 1429, 2954, 3482, 3920, 4503
SapI GCTCTTC 3 cut(s) 1599, 2748, 4404
Sau96I GGNCC 8 cut(s) 213, 659, 2391, 3707, 4334, 4653, 4704, 4705
ScaI AGTACT 3 cut(s) 1744, 2707, 2857
SduI GDGCHC 6 cut(s) 1690, 2739, 4560, 4667, 4708, 4731
SexAI ACCWGGT 3 cut(s) 928, 1483, 4401
SfcI CTRYAG 7 cut(s) 1377, 2031, 2259, 3477, 3648, 3687, 4519
SfoI GGCGCC 1 cut(s) 48
Sfr274I CTCGAG 1 cut(s) 4161
SinI GGWCC 2 cut(s) 659, 2391
SlaI CTCGAG 1 cut(s) 4161
SmlI CTYRAG 1 cut(s) 4161
SmoI CTYRAG 1 cut(s) 4161
SnaBI TACGTA 1 cut(s) 1385
SpeI ACTAGT 1 cut(s) 3749
SphI GCATGC 2 cut(s) 1866, 2468
SsiI CCGC 7 cut(s) 211, 362, 377, 380, 625, 1492, 4570
SspDI GGCGCC 1 cut(s) 46
SspI AATATT 1 cut(s) 2678
StyI CCWWGG 7 cut(s) 899, 1283, 4026, 4355, 4464, 4510, 4667
TaiI ACGT 5 cut(s) 622, 864, 1387, 2371, 3118
TaqI TCGA 8 cut(s) 101, 1442, 2358, 2450, 2492, 3952, 4162, 4407
TaqII GACCGA 1 cut(s) 3617
TatI WGTACW 4 cut(s) 1742, 1782, 2705, 2855
TauI GCSGC 2 cut(s) 214, 382
TfiI GAWTC 7 cut(s) 1255, 1302, 1607, 1633, 3365, 3577, 3818
TspGWI ACGGA 4 cut(s) 754, 1736, 2161, 4828
Tth111I GACNNNGTC 2 cut(s) 1447, 4251
Van91I CCANNNNNTGG 1 cut(s) 331
VneI GTGCAC 2 cut(s) 4556, 4727
VpaK11BI GGWCC 2 cut(s) 659, 2391
XbaI TCTAGA 2 cut(s) 2537, 2566
XceI RCATGY 8 cut(s) 1000, 1025, 1866, 1875, 2072, 2168, 2215, 2468
XhoI CTCGAG 1 cut(s) 4161
XmaJI CCTAGG 1 cut(s) 4510
XmnI GAANNNNTTC 3 cut(s) 1125, 2440, 3729
ZrmI AGTACT 3 cut(s) 1744, 2707, 2857
Zsp2I ATGCAT 3 cut(s) 1108, 2470, 2868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.