RchiOBHm_Chr1g0367441

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003727
Physical Location & Seq
Forward (+)
57751682 .. 57752129
448 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGGAAAGCAGAAAGGTGAATAGCAGGAGCAACTTCCAGATGCCCCTTCACTACCCTAGGTACACCAGAAAGGACTACCAGGACATGCCCGAGTGGAAGCTCGACCGCCTTCTTGCCAATTATGGGTTGCCGGCTCACGGTGACTTGGCTTACAAGAGAGACTTTGCAATGGGTGCCTTTCTCTGGCCTGATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.85

Weight (kDa)

9.1

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 18 - 63 2.1e-28 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 1 cut(s) 106
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 123, 137, 183
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 185
AspA2I CCTAGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 28, 152
AvaI CYCGRG 1 cut(s) 89
AvrII CCTAGG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 57
BlnI CCTAGG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 137, 183
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 56
BseLI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BseMI GCAATG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BsmAI GTCTC 1 cut(s) 153
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 78
BsuRI GGCC 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 130
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 100, 134, 149, 187
CviKI_1 RGCY 4 cut(s) 100, 134, 149, 187
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 88
FaiI YATR 2 cut(s) 86, 123
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 190
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 131
Hin1II CATG 1 cut(s) 88
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 28, 152
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 56, 119
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
Hsp92II CATG 1 cut(s) 88
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 7 cut(s) 10, 50, 65, 79, 92, 144, 169
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MluCI AATT 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 1 cut(s) 196
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 173
NaeI GCCGGC 1 cut(s) 132
NdeII GATC 1 cut(s) 190
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 175
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 196
Sau3AI GATC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 80
SetI ASST 3 cut(s) 18, 62, 102
SfaNI GCATC 1 cut(s) 30
Sse9I AATT 1 cut(s) 118
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 102
TasI AATT 1 cut(s) 118
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
XceI RCATGY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.