Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005202

Physical Location & Seq

Genomic Coordinates Reverse (-)

66267639 .. 66268870

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGTTTGGACATGAGTGTGATGTTTATGTTACTAGCTCAGTTATTAGTGTGTACTGTAAATTGAGAGGTGTGGAATTTGCTCGGAGAGTGTTTGATGAAAGTTTGGATAGGAATGTGGTGTGTTGGACTAGTCTTGTTAGTGGGTATTGTGGCAATGGGACAATGGGTTGGTTGATAGTTGATGATGCCCGTGACCTGTTCGATAAAATGCCTGAGAGAAATTATGTGTCTTACAGTGCAATGGTTTCGGGTTATGTTCGGAATGCTTGTTTCAACAAAGCTATTGATTTGTTTCTTGATTTCAAGCGTCGTCGTGCGAATGTGAGGTTGAAAGAGTCTCTTTTGGTTAGTGTTCTTAATGCCTGTGCTTCTGTGGGTGCATTCGAGGAAGGGAAGTGGATTCAGATGTATTTGGATGACCATGGTTTTGAGTATGGACTTGAGCTCGGTACGGCAGGAATAGATTTTTACGCAAAATGTGGATTCATTAAAGATGCTAAAGAGATATTTGATAAGATGCCGCGTAAAGATGTAACTACTTGGAGTGCTATGATCATGGGATATGCTACTAATGGTGAGAATGATACAGGGCCTGAACTTTTTGCTGAAATGGAAAAGAAGGGACCTAAACCAAATGCTGTGACATTTGTTGGAGTTCTCACTGCATGTAATCACAAAACTCTGGTAAATGAAGCATGGCGAGTATTGGGACGTATGAGTAAAATTTATAGCATTGCTCCAGATATTGAGCACTATGGGTGCATGGTTGATCTCTTGGCCTGTGCTGGGCGAGTGAAAGAGGCAGAGATATTGATAAGAAGTATGGCAATGGAACCAGACGGAGCTATATGGGCCGGTAAGGTTGGGAAGCTTCTCATTCAATTAGAGCCTCAACATAGTGGAAGGTATGTTCTTTTAGCGAACATGTATGCCAAAATGGAAAACTGGGAGGATGTGTTGAGGCTAAGGAAAATGATGAAGGATAGAGAGGTAGTTTCAATTTCTGCTTGGAGTTTCATCGAGATTGATGGTGTTGTGCATAAATTCTTAGCCAATGATAAGTCTCATTCTCATTCAAGAAGTATATACCAAACATTAAGTCAACTGAGGAAGGAACTCGAAAGTTTTTCCAATGCCAATGATTCTTTGCTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

386

Amino Acids

43.67

Weight (kDa)

6.48

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	177 - 224	7.9e-10	PPR repeat family
E_motif	PF20431	292 - 332	8.3e-10	E motif
Eplus_motif	PF20430	347 - 374	2.6e-07	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005202)

Species	Orthologous Gene IDs
malus_domestica	MD04G1188600.v1.1 MD13G1252400.v1.1
prunus_persica	Prupe.1G084600_v2.0.a1
pyrus_communis	pycom13g22560
rosa_chinensis	RchiOBHm_Chr1g0380711 RchiOBHm_Chr3g0484681 RchiOBHm_Chr4g0401751
rosa_laevigata	RLG00000009137 RLG00000023208 RLG00000026276
rosa_multiflora	Rmu_sc0001637.1_g000010 Rmu_sc0014815.1_g000014 Rmu_sc0039959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113990 Rroxscaffold_4G00279090 Rroxscaffold_5G00345080 Rroxscaffold_5G00353300 Rroxscaffold_6G00397530
rosa_rugosa	Rorug04G0031400
rosa_samantha	Rh1BG403400 Rh1CG417600 Rh1DG433700 Rh3AG263400 Rh3DG292100 Rh4AG108800 Rh4BG102500 Rh4CG117100
rosa_wichuraiana	Rw0G005870 Rw1G038990 Rw4G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	526
AciI	CCGC	1 cut(s)	524
AcsI	RAATTY	3 cut(s)	77, 726, 1046
AfaI	GTAC	2 cut(s)	56, 454
AfiI	CCNNNNNNNGG	1 cut(s)	789
AflIII	ACRYGT	1 cut(s)	927
AgsI	TTSAA	6 cut(s)	277, 307, 334, 884, 1002, 1080
AhlI	ACTAGT	1 cut(s)	131
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
AluBI	AGCT	5 cut(s)	39, 284, 448, 848, 874
AluI	AGCT	5 cut(s)	39, 284, 448, 848, 874
Alw21I	GWGCWC	2 cut(s)	450, 756
Alw26I	GTCTC	2 cut(s)	345, 1071
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	3 cut(s)	593, 780, 855
ApoI	RAATTY	3 cut(s)	77, 726, 1046
ArsI	GACNNNNNNTTYG	4 cut(s)	413, 445, 1087, 1119
AspS9I	GGNCC	3 cut(s)	593, 626, 855
AsuHPI	GGTGA	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	450, 756
BccI	CCATC	1 cut(s)	1025
BceAI	ACGGC	1 cut(s)	471
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	345, 1071
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	2 cut(s)	36, 132
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	3 cut(s)	593, 626, 855
BmiI	GGNNCC	2 cut(s)	627, 837
BmrI	ACTGGG	1 cut(s)	958
BmsI	GCATC	3 cut(s)	178, 487, 510
BmuI	ACTGGG	1 cut(s)	958
BpmI	CTGGAG	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	968
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	944, 974
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse118I	RCCGGY	1 cut(s)	857
Bse1I	ACTGG	1 cut(s)	953
Bse3DI	GCAATG	4 cut(s)	163, 249, 735, 837
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	2 cut(s)	424, 961
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMI	GCAATG	4 cut(s)	163, 249, 735, 837
BseMII	CTCAG	3 cut(s)	54, 207, 1100
BseNI	ACTGG	1 cut(s)	953
BseYI	CCCAGC	1 cut(s)	788
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	3 cut(s)	595, 782, 857
BsiHKAI	GWGCWC	2 cut(s)	450, 756
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	3 cut(s)	175, 639, 726
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	2 cut(s)	345, 1071
BsmFI	GGGAC	3 cut(s)	175, 639, 726
BsmI	GAATGC	2 cut(s)	271, 383
BsnI	GGCC	3 cut(s)	595, 782, 857
Bsp1286I	GDGCHC	2 cut(s)	450, 756
Bsp143I	GATC	2 cut(s)	555, 772
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	3 cut(s)	595, 782, 857
BspCNI	CTCAG	3 cut(s)	53, 208, 1101
BspFNI	CGCG	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	627, 837
BsrDI	GCAATG	4 cut(s)	163, 249, 735, 837
BsrFI	RCCGGY	1 cut(s)	857
BsrI	ACTGG	1 cut(s)	953
BssAI	RCCGGY	1 cut(s)	857
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	2 cut(s)	555, 772
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	2 cut(s)	59, 239
BstDEI	CTNAG	5 cut(s)	40, 216, 968, 1051, 1109
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	424, 961
BstFNI	CGCG	1 cut(s)	526
BstKTI	GATC	2 cut(s)	558, 775
BstMAI	GTCTC	2 cut(s)	345, 1071
BstMBI	GATC	2 cut(s)	555, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	854
BstNSI	RCATGY	2 cut(s)	672, 931
BstUI	CGCG	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	595, 782, 857
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	424, 961
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	244, 663
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr10I	RCCGGY	1 cut(s)	857
Cfr13I	GGNCC	3 cut(s)	593, 626, 855
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	55, 453
CviAII	CATG	7 cut(s)	14, 425, 559, 669, 699, 766, 928
CviQI	GTAC	2 cut(s)	55, 453
DdeI	CTNAG	5 cut(s)	40, 216, 968, 1051, 1109
DpnI	GATC	2 cut(s)	557, 774
DpnII	GATC	2 cut(s)	555, 772
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	626
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	2 cut(s)	593, 626
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	7 cut(s)	17, 428, 562, 672, 702, 769, 931
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	3 cut(s)	175, 639, 726
FatI	CATG	7 cut(s)	13, 424, 558, 668, 698, 765, 927
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	2 cut(s)	431, 968
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	2 cut(s)	36, 132
GluI	GCNGC	1 cut(s)	524
GsaI	CCCAGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	3 cut(s)	595, 782, 857
HapII	CCGG	1 cut(s)	858
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	7 cut(s)	17, 428, 562, 672, 702, 769, 931
HincII	GTYRAC	1 cut(s)	1106
HindII	GTYRAC	1 cut(s)	1106
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	4 cut(s)	338, 403, 486, 1145
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	55, 1106
Hpy188I	TCNGA	3 cut(s)	87, 264, 408
Hpy188III	TCNNGA	4 cut(s)	299, 743, 1024, 1080
Hpy8I	GTNNAC	2 cut(s)	55, 1106
Hpy99I	CGWCG	2 cut(s)	315, 318
HpyAV	CCTTC	5 cut(s)	386, 616, 900, 976, 1108
HpyCH4III	ACNGT	2 cut(s)	59, 239
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	5 cut(s)	242, 383, 668, 765, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	854
HpyF3I	CTNAG	5 cut(s)	40, 216, 968, 1051, 1109
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	7 cut(s)	17, 428, 562, 672, 702, 769, 931
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	2 cut(s)	555, 772
LmnI	GCTCC	2 cut(s)	745, 845
LweI	GCATC	3 cut(s)	178, 487, 510
MaeI	CTAG	2 cut(s)	36, 132
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	4 cut(s)	31, 194, 535, 643
MalI	GATC	2 cut(s)	557, 774
MboI	GATC	2 cut(s)	555, 772
MhlI	GDGCHC	2 cut(s)	450, 756
MluCI	AATT	7 cut(s)	62, 77, 223, 726, 884, 1002, 1046
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	2 cut(s)	107, 634
MnlI	CCTC	9 cut(s)	62, 321, 382, 796, 903, 946, 957, 985, 1104
MseI	TTAA	3 cut(s)	360, 492, 1100
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	858
Mva1269I	GAATGC	2 cut(s)	271, 383
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	1 cut(s)	854
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	2 cut(s)	555, 772
NlaIII	CATG	7 cut(s)	17, 428, 562, 672, 702, 769, 931
NlaIV	GGNNCC	2 cut(s)	627, 837
NmuCI	GTSAC	2 cut(s)	194, 643
NspI	RCATGY	2 cut(s)	672, 931
PciI	ACATGT	1 cut(s)	927
PctI	GAATGC	2 cut(s)	271, 383
PfeI	GAWTC	3 cut(s)	403, 486, 1145
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	626
PscI	ACATGT	1 cut(s)	927
Psp124BI	GAGCTC	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	788
PspN4I	GGNNCC	2 cut(s)	627, 837
PspPI	GGNCC	3 cut(s)	593, 626, 855
PspPPI	RGGWCCY	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	56, 454
RsaNI	GTAC	2 cut(s)	55, 453
RseI	CAYNNNNRTG	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	360, 492, 1100
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	2 cut(s)	555, 772
Sau96I	GGNCC	3 cut(s)	593, 626, 855
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	450, 756
SfaNI	GCATC	3 cut(s)	178, 487, 510
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	7 cut(s)	62, 77, 223, 726, 884, 1002, 1046
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	36, 132
SstI	GAGCTC	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	59, 239
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	4 cut(s)	204, 387, 1023, 1122
TasI	AATT	7 cut(s)	62, 77, 223, 726, 884, 1002, 1046
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	3 cut(s)	403, 486, 1145
Tru1I	TTAA	3 cut(s)	360, 492, 1100
Tru9I	TTAA	3 cut(s)	360, 492, 1100
TscAI	CASTG	2 cut(s)	244, 670
TseFI	GTSAC	2 cut(s)	194, 643
Tsp45I	GTSAC	2 cut(s)	194, 643
TspDTI	ATGAA	6 cut(s)	17, 114, 478, 708, 995, 1009
TspGWI	ACGGA	1 cut(s)	858
TspRI	CASTG	2 cut(s)	244, 670
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	3 cut(s)	77, 726, 1046
XceI	RCATGY	2 cut(s)	672, 931
XspI	CTAG	2 cut(s)	36, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.