RchiOBHm_Chr1g0384371

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005922
Physical Location & Seq
Forward (+)
68263328 .. 68264691
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1227 bp
ATGCATCAAGGAATTCGACAAAAAGATTTATACCCGCCTAATAAATCAATACTTGTAAAATCAAAGAGGGAAAATAAAATGGTTTTTCGTGTTGCAGTAGCAACTCAGGCTCTCTTGCTAATCCTCCTCCTCACTACGCCTCACTTCGTATTGGCAGGCAAGAAAGGAGGAGGCGGAGGCAAGAAAGGAGGAGGCGGTAAGGGTGGGGCTAAAAAACCATCGGCACCTTATAGAGCACCTAAGAATGGTGGAGGCGGGGCCAAGAATAAACCATCGAAACCAGCAACACCTTATAGACCACCTGTAGTACCCGAGCCCAAAAAACCAGTGGCAGATTCTACACCTCTGCCGGAAGCTGTGGCCACCATTGAAGTGCCTAGACCAGGGACACTATCGAGAGGTCCCGCCTGTAAGGGCAACGGTGAGGGTATCATATACAAGGGAGGCCCTCTCCTGACCGGGGAGCTCAACCTTTCCATAATATTTTACGGCCAATGGCAGAGCCAACACAAGGATCTGATCAGGAGTTTCCTCAGTTCGTTGGCGGTGCCGGGCTCGACAGCGAACCAGTGGTGGGCCATTGTGGAAAGTTACCAGACTGTGGCCAATATGCCCAACCAAGGCGTCCATATCAAAGTGGGCACTCAGTCGAGCGATGATAAGGCCTCCTTGGGCAAAGTTTTGACCAAAGACTTTATCAAGCAGCTTGTGCAGAGGGCCAAGAGCGGCAACCCCAACACTCTCGCTGTCATCTTCGCTCACAAAGATGTCGCAGTTGCAGACCTGTGCAGGGGCAAATGCTACGAGCATGGAGCGTTTGATAACATGCCCTATCTCATTGTCGGAAACCCCGAAGTTGAGTGCCCTGGTTCTTGTGCCATTCCCTTCGCAAAGGCCAGCTACGGTCCTGCAGGCGACACCGTCAAACCACCAAACGGCGACCTGGGCGTTGATGCTACCATCATCAACTTTGCCTCCGGCTTGGCTTCCGTAGTCACTAACCCATTCAACGGCGGATTTTCCAAACCAGGACCCAAAACCTGGGCGATTGAGGCTGGCAACGCCTGCGAGGATATGTTCGGAAGCGGAGCAGGCCCCGGCCAACCCGGAAAGATGACAATCGACGCAGCTGGTTGTGGCTACAATGCCGTTGGAGATGGGGGTGCCAGATTCTTGCTTCCAGCAATTTGGGATCCAAAGTCGTCCACATGCTGGACCCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

408

Amino Acids

42.6

Weight (kDa)

9.5

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 146 - 407 1.2e-82 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 223, 547, 1163
AccB7I CCANNNNNTGG 3 cut(s) 601, 1041, 1212
AccBSI CCGCTC 1 cut(s) 726
AciI CCGC 9 cut(s) 35, 174, 195, 255, 405, 545, 726, 1014, 1086
AclWI GGATC 3 cut(s) 522, 1187, 1200
AcoI YGGCCR 4 cut(s) 360, 490, 603, 1099
AcsI RAATTY 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 624
AfaI GTAC 1 cut(s) 309
AgsI TTSAA 2 cut(s) 371, 1009
AjnI CCWGG 5 cut(s) 382, 865, 942, 1027, 1040
AluBI AGCT 5 cut(s) 356, 466, 706, 900, 1130
AluI AGCT 5 cut(s) 356, 466, 706, 900, 1130
Alw21I GWGCWC 2 cut(s) 238, 468
AlwI GGATC 3 cut(s) 522, 1187, 1200
Ama87I CYCGRG 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 703, 1127
ApoI RAATTY 1 cut(s) 12
AspS9I GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
AsuC2I CCSGG 4 cut(s) 460, 552, 1098, 1107
AsuHPI GGTGA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 4 cut(s) 401, 905, 1031, 1215
BaeGI GKGCMC 2 cut(s) 644, 866
BalI TGGCCA 2 cut(s) 362, 605
BamHI GGATCC 1 cut(s) 1192
BanI GGYRCC 3 cut(s) 223, 547, 1163
BanII GRGCYC 3 cut(s) 318, 468, 557
Bbv12I GWGCWC 2 cut(s) 238, 468
BbvI GCAGC 2 cut(s) 715, 1139
BccI CCATC 4 cut(s) 226, 280, 968, 1151
BceAI ACGGC 4 cut(s) 505, 952, 1027, 1133
BciT130I CCWGG 5 cut(s) 384, 867, 944, 1029, 1042
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 4 cut(s) 460, 552, 1098, 1107
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 2 cut(s) 303, 909
BisI GCNGC 3 cut(s) 704, 727, 1128
BlsI GCNGC 3 cut(s) 705, 728, 1129
Bme1390I CCNGG 9 cut(s) 384, 460, 552, 867, 944, 1029, 1042, 1098, 1107
Bme18I GGWCC 4 cut(s) 401, 905, 1031, 1215
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
BmiI GGNNCC 9 cut(s) 225, 259, 403, 549, 1033, 1096, 1165, 1194, 1217
BmrFI CCNGG 9 cut(s) 384, 460, 552, 867, 944, 1029, 1042, 1098, 1107
BmsI GCATC 2 cut(s) 13, 943
BplI GAGNNNNNCTC 2 cut(s) 435, 467
BpuMI CCSGG 4 cut(s) 460, 552, 1098, 1107
BsaBI GATNNNNATC 1 cut(s) 1118
BsaHI GRCGYC 1 cut(s) 624
BsaJI CCNNGG 8 cut(s) 383, 459, 619, 669, 865, 943, 1041, 1096
BsaXI ACNNNNNCTCC 2 cut(s) 959, 989
Bse1I ACTGG 2 cut(s) 326, 568
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 5 cut(s) 384, 867, 944, 1029, 1042
BseDI CCNNGG 8 cut(s) 383, 459, 619, 669, 865, 943, 1041, 1096
BseJI GATNNNNATC 1 cut(s) 1118
BseMII CTCAG 3 cut(s) 119, 547, 659
BseNI ACTGG 2 cut(s) 326, 568
BseRI GAGGAG 4 cut(s) 116, 119, 183, 204
BseSI GKGCMC 2 cut(s) 644, 866
BseXI GCAGC 2 cut(s) 715, 1139
BsgI GTGCAG 2 cut(s) 731, 808
BshNI GGYRCC 3 cut(s) 223, 547, 1163
BsiHKAI GWGCWC 2 cut(s) 238, 468
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 6 cut(s) 350, 459, 551, 978, 1098, 1107
BslFI GGGAC 2 cut(s) 387, 400
BsmFI GGGAC 2 cut(s) 387, 400
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 6 cut(s) 238, 318, 468, 557, 644, 866
Bsp143I GATC 3 cut(s) 514, 519, 1192
BspACI CCGC 9 cut(s) 35, 174, 195, 255, 405, 545, 726, 1014, 1086
BspCNI CTCAG 3 cut(s) 118, 546, 658
BspLI GGNNCC 9 cut(s) 225, 259, 403, 549, 1033, 1096, 1165, 1194, 1217
BspMAI CTGCAG 1 cut(s) 913
BspPI GGATC 3 cut(s) 522, 1187, 1200
BspT107I GGYRCC 3 cut(s) 223, 547, 1163
BsrBI CCGCTC 1 cut(s) 726
BsrI ACTGG 2 cut(s) 326, 568
BssECI CCNNGG 8 cut(s) 383, 459, 619, 669, 865, 943, 1041, 1096
BssMI GATC 3 cut(s) 514, 519, 1192
BssNI GRCGYC 1 cut(s) 624
BssT1I CCWWGG 2 cut(s) 619, 669
Bst2UI CCWGG 5 cut(s) 384, 867, 944, 1029, 1042
Bst4CI ACNGT 4 cut(s) 422, 601, 905, 922
BstACI GRCGYC 1 cut(s) 624
BstAPI GCANNNNNTGC 2 cut(s) 709, 1065
BstC8I GCNNGC 6 cut(s) 157, 898, 913, 1057, 1066, 1093
BstDEI CTNAG 4 cut(s) 105, 240, 533, 645
BstENI CCTNNNNNAGG 1 cut(s) 381
BstKTI GATC 3 cut(s) 517, 522, 1195
BstMBI GATC 3 cut(s) 514, 519, 1192
BstMWI GCNNNNNNNGC 7 cut(s) 107, 709, 945, 1052, 1061, 1065, 1092
BstNI CCWGG 5 cut(s) 384, 867, 944, 1029, 1042
BstNSI RCATGY 2 cut(s) 829, 1212
BstSCI CCNGG 9 cut(s) 382, 458, 550, 865, 942, 1027, 1040, 1096, 1105
BstSFI CTRYAG 2 cut(s) 303, 909
BstSLI GKGCMC 2 cut(s) 644, 866
BstV1I GCAGC 2 cut(s) 715, 1139
BstX2I RGATCY 2 cut(s) 514, 1192
BstXI CCANNNNNNTGG 1 cut(s) 1188
BstYI RGATCY 2 cut(s) 514, 1192
BtgZI GCGATG 1 cut(s) 669
BtsIMutI CAGTG 2 cut(s) 333, 575
Cac8I GCNNGC 6 cut(s) 157, 898, 913, 1057, 1066, 1093
Cfr13I GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
CseI GACGC 2 cut(s) 613, 1133
Csp6I GTAC 1 cut(s) 308
CviAII CATG 3 cut(s) 809, 826, 1209
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 4 cut(s) 105, 240, 533, 645
DpnI GATC 3 cut(s) 516, 521, 1194
DpnII GATC 3 cut(s) 514, 519, 1192
EaeI YGGCCR 4 cut(s) 360, 490, 603, 1099
EciI GGCGGA 2 cut(s) 189, 1029
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 2 cut(s) 619, 669
Eco147I AGGCCT 1 cut(s) 665
Eco24I GRGCYC 3 cut(s) 318, 468, 557
Eco47I GGWCC 4 cut(s) 401, 905, 1031, 1215
Eco53kI GAGCTC 1 cut(s) 466
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 466
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoO109I RGGNCCY 4 cut(s) 401, 446, 1031, 1094
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 5 cut(s) 382, 865, 942, 1027, 1040
EcoT14I CCWWGG 2 cut(s) 619, 669
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 318, 468, 557
ErhI CCWWGG 2 cut(s) 619, 669
FaeI CATG 3 cut(s) 812, 829, 1212
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 2 cut(s) 387, 400
FatI CATG 3 cut(s) 808, 825, 1208
FauI CCCGC 3 cut(s) 42, 248, 412
FbaI TGATCA 1 cut(s) 519
Fnu4HI GCNGC 3 cut(s) 704, 727, 1128
FriOI GRGCYC 3 cut(s) 318, 468, 557
Fsp4HI GCNGC 3 cut(s) 704, 727, 1128
FspBI CTAG 1 cut(s) 378
GluI GCNGC 3 cut(s) 704, 727, 1128
HapII CCGG 6 cut(s) 350, 459, 551, 978, 1098, 1107
HgaI GACGC 2 cut(s) 613, 1133
Hin1I GRCGYC 1 cut(s) 624
Hin1II CATG 3 cut(s) 812, 829, 1212
HinfI GANTC 2 cut(s) 335, 1170
HpaII CCGG 6 cut(s) 350, 459, 551, 978, 1098, 1107
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 1 cut(s) 1206
Hpy188I TCNGA 3 cut(s) 519, 845, 1082
Hpy188III TCNNGA 3 cut(s) 396, 454, 523
Hpy8I GTNNAC 1 cut(s) 1206
Hpy99I CGWCG 1 cut(s) 1127
HpyAV CCTTC 1 cut(s) 895
HpyCH4III ACNGT 4 cut(s) 422, 601, 905, 922
HpyCH4V TGCA 6 cut(s) 4, 95, 712, 779, 789, 911
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 709, 945, 1052, 1061, 1065, 1092
HpyF3I CTNAG 4 cut(s) 105, 240, 533, 645
Hsp92I GRCGYC 1 cut(s) 624
Hsp92II CATG 3 cut(s) 812, 829, 1212
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 3 cut(s) 514, 519, 1192
LmnI GCTCC 3 cut(s) 463, 812, 1088
Lsp1109I GCAGC 2 cut(s) 715, 1139
LweI GCATC 2 cut(s) 13, 943
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 590, 994
MalI GATC 3 cut(s) 516, 521, 1194
MbiI CCGCTC 1 cut(s) 726
MboI GATC 3 cut(s) 514, 519, 1192
MboII GAAGA 1 cut(s) 745
MflI RGATCY 2 cut(s) 514, 1192
MhlI GDGCHC 6 cut(s) 238, 318, 468, 557, 644, 866
MlsI TGGCCA 2 cut(s) 362, 605
MluCI AATT 2 cut(s) 12, 1185
MluNI TGGCCA 2 cut(s) 362, 605
MmeI TCCRAC 2 cut(s) 823, 1132
Mox20I TGGCCA 2 cut(s) 362, 605
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 2 cut(s) 362, 605
MslI CAYNNNNRTG 2 cut(s) 371, 765
Msp20I TGGCCA 2 cut(s) 362, 605
MspA1I CMGCKG 1 cut(s) 1130
MspI CCGG 6 cut(s) 350, 459, 551, 978, 1098, 1107
MspR9I CCNGG 9 cut(s) 384, 460, 552, 867, 944, 1029, 1042, 1098, 1107
MvaI CCWGG 5 cut(s) 384, 867, 944, 1029, 1042
MwoI GCNNNNNNNGC 7 cut(s) 107, 709, 945, 1052, 1061, 1065, 1092
NciI CCSGG 4 cut(s) 460, 552, 1098, 1107
NdeII GATC 3 cut(s) 514, 519, 1192
NlaIII CATG 3 cut(s) 812, 829, 1212
NlaIV GGNNCC 9 cut(s) 225, 259, 403, 549, 1033, 1096, 1165, 1194, 1217
NmuCI GTSAC 1 cut(s) 994
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 829, 1212
PceI AGGCCT 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 849
PfeI GAWTC 2 cut(s) 335, 1170
PflFI GACNNNGTC 1 cut(s) 920
PflMI CCANNNNNTGG 3 cut(s) 601, 1041, 1212
PkrI GCNGC 3 cut(s) 705, 728, 1129
PpuMI RGGWCCY 2 cut(s) 401, 1031
Psp124BI GAGCTC 1 cut(s) 468
Psp5II RGGWCCY 2 cut(s) 401, 1031
Psp6I CCWGG 5 cut(s) 382, 865, 942, 1027, 1040
PspGI CCWGG 5 cut(s) 382, 865, 942, 1027, 1040
PspN4I GGNNCC 9 cut(s) 225, 259, 403, 549, 1033, 1096, 1165, 1194, 1217
PspPI GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
PspPPI RGGWCCY 2 cut(s) 401, 1031
PstI CTGCAG 1 cut(s) 913
PsuI RGATCY 2 cut(s) 514, 1192
PsyI GACNNNGTC 1 cut(s) 920
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 2 cut(s) 371, 765
SacI GAGCTC 1 cut(s) 468
SatI GCNGC 3 cut(s) 704, 727, 1128
Sau3AI GATC 3 cut(s) 514, 519, 1192
Sau96I GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
SbfI CCTGCAGG 1 cut(s) 913
ScrFI CCNGG 9 cut(s) 384, 460, 552, 867, 944, 1029, 1042, 1098, 1107
SdaI CCTGCAGG 1 cut(s) 913
SduI GDGCHC 6 cut(s) 238, 318, 468, 557, 644, 866
SfaNI GCATC 2 cut(s) 13, 943
SfcI CTRYAG 2 cut(s) 303, 909
SinI GGWCC 4 cut(s) 401, 905, 1031, 1215
SmiMI CAYNNNNRTG 2 cut(s) 371, 765
Sse8387I CCTGCAGG 1 cut(s) 913
Sse9I AATT 2 cut(s) 12, 1185
SseBI AGGCCT 1 cut(s) 665
SsiI CCGC 9 cut(s) 35, 174, 195, 255, 405, 545, 726, 1014, 1086
SspI AATATT 1 cut(s) 483
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 9 cut(s) 382, 458, 550, 865, 942, 1027, 1040, 1096, 1105
StyI CCWWGG 2 cut(s) 619, 669
TaaI ACNGT 4 cut(s) 422, 601, 905, 922
TaqI TCGA 6 cut(s) 16, 275, 395, 557, 650, 1122
TasI AATT 2 cut(s) 12, 1185
TauI GCSGC 1 cut(s) 729
TfiI GAWTC 2 cut(s) 335, 1170
TscAI CASTG 2 cut(s) 333, 575
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 2 cut(s) 703, 1127
Tsp45I GTSAC 1 cut(s) 994
TspGWI ACGGA 1 cut(s) 979
TspRI CASTG 2 cut(s) 333, 575
Tth111I GACNNNGTC 1 cut(s) 920
Van91I CCANNNNNTGG 3 cut(s) 601, 1041, 1212
VpaK11BI GGWCC 4 cut(s) 401, 905, 1031, 1215
XagI CCTNNNNNAGG 1 cut(s) 381
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 829, 1212
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XspI CTAG 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.