RchiOBHm_Chr1g0384691

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007881
Physical Location & Seq
Forward (+)
68433234 .. 68438342
5109 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
ATGGAAGAAGCGAAAGCAATGGCTCAACATCAGCAGCAGCAGCAGCAGCTATTGTTACAGCAGCAACAACAGCATCAGCAACAGCAGCAGCAGCAACATCAGCAGCAGCAACATCAGCAACAGCATCAGCAGCAACAACAACAACAACAACAGTTATTACTTTTACATCAATTACAAAGACAACAGCAACAGGCGCAACAGGCCGCTGCCATTTCTCGTTTCCCTTCCAACATCGATGCTCACTTGCGCCCACTCCGAGCCCTCAATCTCCAACCTAACCAAATCTCCAACCCCAACCCTAACCCTAACCCTACCCCCAACCCCAACCCTAACCCCAATTCTGTTCTTCCCAATCTCCAACAAAATCCTAATGAGAACCCGCAGCAACAGCCCCAACAGCAGCAGCAACAGAGGGCGATCCGTCCTGGTAACCAGGCCGAGCTGCAAATGGCGTACCAGGACGCCTGGCGGGTCTGCCATCCGGATTTCAAGCGTCCCTTCTCTTCTCTCGAAGACGCATGTGAAAGGTTACTGCCTTACCATGTGGTGGCAGATTATGAGGCTGAAGAGGATGACCGAATCCTTGACTCTGACACTACAGGCATGATGCCATCTCGCTCTCAGCAGTGGGATCACAACATTTCTGCAAAAGTTGCTGAGTTTACAGCAACGTTTGAGAAACAGGCACTGGCCTTCAACATTATCTCCCGCAAGCGTACTTTTGGGGAATTTAGATCAGAAGAGAGACTTATGATTGAGCAAGCTCTTTGCCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCAAGAGAAAAAGCTCGAATGGCAGCGATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAACACATGCCGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGGCTCAAGGCAATGATGTCCCGATTGGTCATGATATGAGAGTACAGGAACACGGGGCTAACCCAGAAGAGATGATAAATGGATGGGGAAATAGTATGCAAAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGACGAGGAGACTGAGAATGGATCTACTGGCATGCAGGATGGCTGGCGTGAAGTTGGAGAATTTGATTTGAACACACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

381

Amino Acids

43.94

Weight (kDa)

5.17

Isoelectric Point (pI)

72.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 154 - 268 1.3e-26 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 547
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 4 cut(s) 204, 380, 469, 709
AclI AACGTT 1 cut(s) 671
AclWI GGATC 3 cut(s) 412, 639, 1093
AcsI RAATTY 2 cut(s) 728, 1124
AcuI CTGAAG 2 cut(s) 585, 1071
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 3 cut(s) 455, 718, 972
AfiI CCNNNNNNNGG 3 cut(s) 547, 912, 913
AflIII ACRYGT 1 cut(s) 1139
AgsI TTSAA 4 cut(s) 490, 697, 819, 1135
AjnI CCWGG 4 cut(s) 424, 432, 456, 464
AluBI AGCT 6 cut(s) 49, 442, 764, 811, 830, 863
AluI AGCT 6 cut(s) 49, 442, 764, 811, 830, 863
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 2 cut(s) 739, 1067
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 3 cut(s) 412, 639, 1093
AlwNI CAGNNNCTG 1 cut(s) 688
Ama87I CYCGRG 2 cut(s) 864, 900
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 4 cut(s) 201, 435, 690, 903
ApaI GGGCCC 1 cut(s) 907
ApaLI GTGCAC 1 cut(s) 921
ApoI RAATTY 2 cut(s) 728, 1124
Asp700I GAANNNNTTC 1 cut(s) 1056
AspLEI GCGC 2 cut(s) 196, 249
AspS9I GGNCC 2 cut(s) 903, 904
AvaI CYCGRG 2 cut(s) 864, 900
BaeGI GKGCMC 2 cut(s) 907, 925
BanII GRGCYC 3 cut(s) 262, 907, 934
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 925
BccI CCATC 5 cut(s) 486, 619, 1005, 1054, 1097
BciT130I CCWGG 4 cut(s) 426, 434, 458, 466
BcoDI GTCTC 2 cut(s) 739, 1067
BfmI CTRYAG 1 cut(s) 597
Bme1390I CCNGG 4 cut(s) 426, 434, 458, 466
BmeT110I CYCGRG 2 cut(s) 864, 900
BmgT120I GGNCC 2 cut(s) 903, 904
BmiI GGNNCC 2 cut(s) 905, 906
BmrFI CCNGG 4 cut(s) 426, 434, 458, 466
BmsI GCATC 4 cut(s) 82, 133, 226, 597
BpiI GAAGAC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 918
Bsa29I ATCGAT 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 462
BsaWI WCCGGW 1 cut(s) 481
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 689, 719
Bsc4I CCNNNNNNNGG 3 cut(s) 547, 912, 913
Bse1I ACTGG 2 cut(s) 693, 1096
Bse3DI GCAATG 2 cut(s) 24, 946
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 4 cut(s) 426, 434, 458, 466
BseCI ATCGAT 1 cut(s) 234
BseGI GGATG 4 cut(s) 478, 577, 1016, 1108
BseLI CCNNNNNNNGG 3 cut(s) 547, 912, 913
BseMI GCAATG 2 cut(s) 24, 946
BseMII CTCAG 3 cut(s) 635, 648, 1068
BseNI ACTGG 2 cut(s) 693, 1096
BseRI GAGGAG 1 cut(s) 1085
BseSI GKGCMC 2 cut(s) 907, 925
BshFI GGCC 4 cut(s) 203, 437, 692, 905
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 925
BsiHKCI CYCGRG 2 cut(s) 864, 900
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 2 cut(s) 480, 932
BslI CCNNNNNNNGG 3 cut(s) 547, 912, 913
BsmAI GTCTC 2 cut(s) 739, 1067
BsmFI GGGAC 2 cut(s) 480, 932
BsnI GGCC 4 cut(s) 203, 437, 692, 905
BsoBI CYCGRG 2 cut(s) 864, 900
Bsp120I GGGCCC 1 cut(s) 903
Bsp1286I GDGCHC 4 cut(s) 262, 907, 925, 934
Bsp13I TCCGGA 1 cut(s) 481
Bsp143I GATC 4 cut(s) 417, 631, 734, 1085
BspACI CCGC 4 cut(s) 204, 380, 469, 709
BspANI GGCC 4 cut(s) 203, 437, 692, 905
BspCNI CTCAG 3 cut(s) 634, 649, 1069
BspDI ATCGAT 1 cut(s) 234
BspEI TCCGGA 1 cut(s) 481
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 2 cut(s) 905, 906
BspPI GGATC 3 cut(s) 412, 639, 1093
BsrDI GCAATG 2 cut(s) 24, 946
BsrI ACTGG 2 cut(s) 693, 1096
BssMI GATC 4 cut(s) 417, 631, 734, 1085
BssNI GRCGYC 1 cut(s) 462
Bst2UI CCWGG 4 cut(s) 426, 434, 458, 466
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 4 cut(s) 508, 561, 735, 990
BstACI GRCGYC 1 cut(s) 462
BstAPI GCANNNNNTGC 1 cut(s) 653
BstC8I GCNNGC 5 cut(s) 713, 762, 861, 1097, 1109
BstDEI CTNAG 3 cut(s) 621, 657, 1077
BstEII GGTNACC 1 cut(s) 428
BstF5I GGATG 4 cut(s) 478, 577, 1016, 1108
BstHHI GCGC 2 cut(s) 196, 249
BstKTI GATC 4 cut(s) 420, 634, 737, 1088
BstMAI GTCTC 2 cut(s) 739, 1067
BstMBI GATC 4 cut(s) 417, 631, 734, 1085
BstNI CCWGG 4 cut(s) 426, 434, 458, 466
BstNSI RCATGY 4 cut(s) 522, 792, 887, 1099
BstPI GGTNACC 1 cut(s) 428
BstSCI CCNGG 4 cut(s) 424, 432, 456, 464
BstSFI CTRYAG 1 cut(s) 597
BstSLI GKGCMC 2 cut(s) 907, 925
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 1085
BstYI RGATCY 1 cut(s) 1085
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 4 cut(s) 203, 437, 692, 905
BsuTUI ATCGAT 1 cut(s) 234
BtsCI GGATG 4 cut(s) 478, 577, 1016, 1108
BtsI GCAGTG 1 cut(s) 632
BtsIMutI CAGTG 2 cut(s) 632, 686
Cac8I GCNNGC 5 cut(s) 713, 762, 861, 1097, 1109
CaiI CAGNNNCTG 1 cut(s) 688
CciI TCATGA 1 cut(s) 958
CfoI GCGC 2 cut(s) 196, 249
Cfr13I GGNCC 2 cut(s) 903, 904
ClaI ATCGAT 1 cut(s) 234
CseI GACGC 3 cut(s) 470, 482, 524
Csp6I GTAC 3 cut(s) 454, 717, 971
CviAII CATG 7 cut(s) 519, 542, 604, 789, 884, 959, 1096
CviQI GTAC 3 cut(s) 454, 717, 971
DdeI CTNAG 3 cut(s) 621, 657, 1077
DpnI GATC 4 cut(s) 419, 633, 736, 1087
DpnII GATC 4 cut(s) 417, 631, 734, 1085
Eam1104I CTCTTC 4 cut(s) 508, 561, 735, 990
EarI CTCTTC 4 cut(s) 508, 561, 735, 990
Eco24I GRGCYC 3 cut(s) 262, 907, 934
Eco57I CTGAAG 2 cut(s) 585, 1071
Eco88I CYCGRG 2 cut(s) 864, 900
Eco91I GGTNACC 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 904
EcoO65I GGTNACC 1 cut(s) 428
EcoRII CCWGG 4 cut(s) 424, 432, 456, 464
EcoT38I GRGCYC 3 cut(s) 262, 907, 934
FaeI CATG 7 cut(s) 522, 545, 607, 792, 887, 962, 1099
FalI AAGNNNNNCTT 4 cut(s) 482, 514, 732, 764
FaqI GGGAC 2 cut(s) 480, 932
FatI CATG 7 cut(s) 518, 541, 603, 788, 883, 958, 1095
FauI CCCGC 3 cut(s) 387, 462, 716
FokI GGATG 4 cut(s) 465, 584, 1023, 1115
FriOI GRGCYC 3 cut(s) 262, 907, 934
GlaI GCGC 2 cut(s) 195, 248
HaeIII GGCC 4 cut(s) 203, 437, 692, 905
HapII CCGG 1 cut(s) 482
HgaI GACGC 3 cut(s) 470, 482, 524
HhaI GCGC 2 cut(s) 196, 249
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 7 cut(s) 522, 545, 607, 792, 887, 962, 1099
Hin6I GCGC 2 cut(s) 194, 247
HinP1I GCGC 2 cut(s) 194, 247
HinfI GANTC 4 cut(s) 579, 587, 815, 872
HpaII CCGG 1 cut(s) 482
Hpy166II GTNNAC 2 cut(s) 663, 923
Hpy188I TCNGA 4 cut(s) 257, 592, 739, 1051
Hpy188III TCNNGA 6 cut(s) 482, 509, 794, 819, 949, 959
Hpy8I GTNNAC 2 cut(s) 663, 923
HpyAV CCTTC 3 cut(s) 234, 508, 703
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 2 cut(s) 671, 1141
HpyCH4V TGCA 5 cut(s) 445, 647, 923, 1027, 1099
HpyF3I CTNAG 3 cut(s) 621, 657, 1077
HpySE526I ACGT 2 cut(s) 671, 1141
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 7 cut(s) 522, 545, 607, 792, 887, 962, 1099
HspAI GCGC 2 cut(s) 194, 247
Kpn2I TCCGGA 1 cut(s) 481
Kzo9I GATC 4 cut(s) 417, 631, 734, 1085
LweI GCATC 4 cut(s) 82, 133, 226, 597
MaeII ACGT 2 cut(s) 671, 1141
MaeIII GTNAC 4 cut(s) 54, 428, 528, 873
MalI GATC 4 cut(s) 419, 633, 736, 1087
MboI GATC 4 cut(s) 417, 631, 734, 1085
MboII GAAGA 9 cut(s) 17, 338, 495, 524, 578, 752, 788, 1007, 1064
MflI RGATCY 1 cut(s) 1085
MhlI GDGCHC 4 cut(s) 262, 907, 925, 934
MluCI AATT 5 cut(s) 170, 337, 728, 797, 1124
MlyI GAGTC 2 cut(s) 581, 881
MmeI TCCRAC 5 cut(s) 252, 295, 312, 382, 1099
MnlI CCTC 5 cut(s) 272, 405, 553, 562, 1063
MroI TCCGGA 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 2 cut(s) 800, 1144
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 4 cut(s) 426, 434, 458, 466
MvaI CCWGG 4 cut(s) 426, 434, 458, 466
NdeII GATC 4 cut(s) 417, 631, 734, 1085
NlaIII CATG 7 cut(s) 522, 545, 607, 792, 887, 962, 1099
NlaIV GGNNCC 2 cut(s) 905, 906
NmeAIII GCCGAG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 873
NspI RCATGY 4 cut(s) 522, 792, 887, 1099
PaeI GCATGC 1 cut(s) 1099
PagI TCATGA 1 cut(s) 958
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 2 cut(s) 579, 815
PflMI CCANNNNNTGG 1 cut(s) 547
PleI GAGTC 2 cut(s) 581, 880
PpsI GAGTC 2 cut(s) 581, 880
Psp1406I AACGTT 1 cut(s) 671
Psp6I CCWGG 4 cut(s) 424, 432, 456, 464
PspEI GGTNACC 1 cut(s) 428
PspGI CCWGG 4 cut(s) 424, 432, 456, 464
PspN4I GGNNCC 2 cut(s) 905, 906
PspOMI GGGCCC 1 cut(s) 903
PspPI GGNCC 2 cut(s) 903, 904
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 1085
RsaI GTAC 3 cut(s) 455, 718, 972
RsaNI GTAC 3 cut(s) 454, 717, 971
SaqAI TTAA 2 cut(s) 800, 1144
Sau3AI GATC 4 cut(s) 417, 631, 734, 1085
Sau96I GGNCC 2 cut(s) 903, 904
SchI GAGTC 2 cut(s) 581, 881
ScrFI CCNGG 4 cut(s) 426, 434, 458, 466
SduI GDGCHC 4 cut(s) 262, 907, 925, 934
SfaNI GCATC 4 cut(s) 82, 133, 226, 597
SfcI CTRYAG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 933
SmoI CTYRAG 1 cut(s) 933
SphI GCATGC 1 cut(s) 1099
Sse9I AATT 5 cut(s) 170, 337, 728, 797, 1124
SsiI CCGC 4 cut(s) 204, 380, 469, 709
StyD4I CCNGG 4 cut(s) 424, 432, 456, 464
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 2 cut(s) 674, 1144
TaqI TCGA 3 cut(s) 234, 510, 832
TaqII GACCGA 1 cut(s) 591
TasI AATT 5 cut(s) 170, 337, 728, 797, 1124
TatI WGTACW 1 cut(s) 970
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 2 cut(s) 579, 815
Tru1I TTAA 2 cut(s) 800, 1144
Tru9I TTAA 2 cut(s) 800, 1144
TscAI CASTG 2 cut(s) 632, 693
TseFI GTSAC 1 cut(s) 873
Tsp45I GTSAC 1 cut(s) 873
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 2 cut(s) 632, 693
Van91I CCANNNNNTGG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 921
XapI RAATTY 2 cut(s) 728, 1124
XceI RCATGY 4 cut(s) 522, 792, 887, 1099
XmnI GAANNNNTTC 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.