Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGTATTCTTTCCATCAGTGTGGAGGAAATGTTGGTGACTCATGCAGTATTCCACTACCTCCATGGTTGCTTGAAGAGATAAGCAAGAACCCTGACCTTGTGTACACAGACAAATCTGGTAGGAGGAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

44

Amino Acids

4.94

Weight (kDa)

5.5

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 43	5.1e-22	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	47
BccI	CCATC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
BseDI	CCNNGG	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	42, 63
CviQI	GTAC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	2 cut(s)	45, 66
FaiI	YATR	2 cut(s)	43, 64
FatI	CATG	2 cut(s)	41, 62
Hin1II	CATG	2 cut(s)	45, 66
HinfI	GANTC	2 cut(s)	38, 127
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	103, 105
Hpy188I	TCNGA	1 cut(s)	134
Hpy8I	GTNNAC	2 cut(s)	103, 105
HpyCH4V	TGCA	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	45, 66
LpnPI	CCDG	2 cut(s)	102, 105
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	3 cut(s)	17, 69, 117
MslI	CAYNNNNRTG	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	62
NlaIII	CATG	2 cut(s)	45, 66
NmuCI	GTSAC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	18
SchI	GAGTC	1 cut(s)	32
SetI	ASST	2 cut(s)	61, 99
SgeI	CNNG	7 cut(s)	54, 75, 83, 97, 104, 110, 129
SmiMI	CAYNNNNRTG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	62
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.