Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

14280082 .. 14283001

Gene Structure 2920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCACTGGCAATCCCACCAAATCATCGTCCTCCTCCTCCTCCTCATCATAATCTCCCTATTACATTCAACACCAGTAATGGAGACTCTCTCTCACCCAGCCACCACAGCCGTCTTCTCCACTTGTTGAATCAATGTACGTCCATGTCTCAGCTGAAACAAATACACGCTCACACCCTACGCACCACATCCACCACAAACCCACACACCCTCTTCCTCCACAGCCGAATCCTCCACTTCTCATCCCTAACCGATATCCGCTACGCCTTTCGGGTTTTCAATCAGATTGAGAGTCCCAACTCTTTCACCTGGAACACCCTCATCAGGGGTTGCGCTCGAAGCTCTGGGCTCGAAAACCAGGCTATACTACTCTACTGTGAAATGTTATCACAAGGAGTTGCTCTGCCGGATGAGTATACCTTCCCCTTTGTTCTCAGAGCTTGTGCTTACTTGTTTGCCTTTTCGGAAGGAAAGCAAGCGCATGCTCATGTTGTTAAACTTGGGTTTGGTTCAGACGTTTATATCGGCAATAGTCTGATTCATCTGTATGCTTCCTGTGGGTGTTTGGATTACGCACAGAAGGTGTTTGAGAAAATGTGTGAGAGAAGCCTTGTGTCGTGGAATGTTATGATTGATTCTTTGGTTGGGGCTGGCGAGTTTGAGAGTTCGCTCAAAGTGTTTGGTCAGATGCAGAGGCTGTTTGAGCCTGATGGGTATACAATGCAGAGTGTTATAAATGCTTGTGCTGGTTTGGGGGCTTTGGATTTGGGAATTTGGGCTCATGCTTATGTGTTGAGGAAGTGTGGTAATGCTGTAGCCAGCAATGTTTTGCTGAACTCTTCGTTGGTTGATATGTATTGCAAATGTGGGTCCTTGGATATGGCTCTCCAAGTGTTTGAGGGAATGCCGAAACGTGATGTGATTACATGGAATTATATGATTTTGGGGTTTGCCATGCATGGAAAAGCTGAGGCAGTCTTAAAGTGTTTTGATCGTATGGTTAATATGGAGAGTTGTAAGCCGAATTCCATCACATTCGTTGGTGTTTTGAGCGCATGCAATCACAGAGGCATGGTTGACGAAGGTCGTAAGTTCTTTGATGTGATGGTAAAAGAGTACGAGATTGAACCACGATTAGAGCACTACGGGTGCCTAGTTGATCTTCTTGCACGTGCTGGTTTCATTGACGAAGCTTTGAATTTGGTGACAACAATGCCTGTGAAGCCTGATGCTGTAATATGGAGGAGTCTTCTTGATTCTTGCAGTAGGCAACAGCATGCCAGTATTGAGCTAAGTGAAGAAGTGGCCAGGCAGATTCTTGAGCCTGGAGGAGAGGATGTTTCTAGTGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

451

Amino Acids

50.17

Weight (kDa)

6.25

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	99 - 149	1.8e-08	PPR repeat family
PPR_2	PF13041	203 - 249	1.8e-07	PPR repeat family
PPR_2	PF13041	305 - 353	9.3e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	1149
AccI	GTMKAC	2 cut(s)	416, 716
AciI	CCGC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	1305
AcsI	RAATTY	3 cut(s)	771, 1024, 1198
AcvI	CACGTG	1 cut(s)	1172
AfaI	GTAC	2 cut(s)	139, 1118
AfiI	CCNNNNNNNGG	2 cut(s)	324, 325
AgsI	TTSAA	5 cut(s)	70, 130, 280, 1127, 1198
AjnI	CCWGG	4 cut(s)	308, 357, 1307, 1324
AjuI	GAANNNNNNNTTGG	2 cut(s)	827, 859
AluBI	AGCT	6 cut(s)	154, 342, 440, 968, 1193, 1291
AluI	AGCT	6 cut(s)	154, 342, 440, 968, 1193, 1291
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	2 cut(s)	78, 153
AlwNI	CAGNNNCTG	1 cut(s)	697
AoxI	GGCC	1 cut(s)	1305
ApoI	RAATTY	3 cut(s)	771, 1024, 1198
AspLEI	GCGC	3 cut(s)	335, 481, 1055
AspS9I	GGNCC	1 cut(s)	870
AsuHPI	GGTGA	3 cut(s)	87, 298, 1216
AvaII	GGWCC	1 cut(s)	870
BalI	TGGCCA	1 cut(s)	1307
BanI	GGYRCC	1 cut(s)	1149
BanII	GRGCYC	2 cut(s)	351, 781
BbrPI	CACGTG	1 cut(s)	1172
BbsI	GAAGAC	2 cut(s)	107, 1241
Bbv12I	GWGCWC	1 cut(s)	1143
BbvCI	CCTCAGC	1 cut(s)	969
BccI	CCATC	3 cut(s)	704, 1037, 1099
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	4 cut(s)	310, 359, 1309, 1326
BcoDI	GTCTC	2 cut(s)	78, 153
BfaI	CTAG	2 cut(s)	1154, 1344
BfmI	CTRYAG	1 cut(s)	813
Bme1390I	CCNGG	4 cut(s)	310, 359, 1309, 1326
Bme18I	GGWCC	1 cut(s)	870
BmgT120I	GGNCC	1 cut(s)	870
BmiI	GGNNCC	2 cut(s)	871, 1151
BmrFI	CCNGG	4 cut(s)	310, 359, 1309, 1326
BmsI	GCATC	2 cut(s)	678, 1219
BoxI	GACNNNNGTC	1 cut(s)	1083
BpiI	GAAGAC	2 cut(s)	107, 1241
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpmI	CTGGAG	1 cut(s)	1347
Bpu10I	CCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	1 cut(s)	1340
BsaAI	YACGTR	1 cut(s)	1172
BsaJI	CCNNGG	1 cut(s)	873
BsaXI	ACNNNNNCTCC	2 cut(s)	1323, 1353
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 325
Bse1I	ACTGG	3 cut(s)	12, 75, 1281
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	4 cut(s)	310, 359, 1309, 1326
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	4 cut(s)	188, 242, 415, 1342
BseLI	CCNNNNNNNGG	2 cut(s)	324, 325
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	3 cut(s)	164, 448, 960
BseNI	ACTGG	3 cut(s)	12, 75, 1281
BseRI	GAGGAG	6 cut(s)	24, 27, 30, 33, 1258, 1344
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	1307
BshNI	GGYRCC	1 cut(s)	1149
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	324, 325
BsmAI	GTCTC	2 cut(s)	78, 153
BsmFI	GGGAC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	1 cut(s)	1307
Bsp1286I	GDGCHC	3 cut(s)	351, 781, 1143
Bsp143I	GATC	2 cut(s)	991, 1159
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	1307
BspCNI	CTCAG	3 cut(s)	163, 447, 961
BspLI	GGNNCC	2 cut(s)	871, 1151
BspT107I	GGYRCC	1 cut(s)	1149
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	12, 75, 1281
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	2 cut(s)	991, 1159
BssNAI	GTATAC	2 cut(s)	417, 717
BssT1I	CCWWGG	1 cut(s)	873
Bst1107I	GTATAC	2 cut(s)	417, 717
Bst2UI	CCWGG	4 cut(s)	310, 359, 1309, 1326
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	2 cut(s)	218, 844
BstBAI	YACGTR	1 cut(s)	1172
BstC8I	GCNNGC	6 cut(s)	477, 483, 652, 820, 1057, 1278
BstDEI	CTNAG	4 cut(s)	150, 434, 969, 1292
BstF5I	GGATG	4 cut(s)	188, 242, 415, 1342
BstHHI	GCGC	3 cut(s)	335, 481, 1055
BstKTI	GATC	2 cut(s)	994, 1162
BstMAI	GTCTC	2 cut(s)	78, 153
BstMBI	GATC	2 cut(s)	991, 1159
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 339, 703, 1222
BstNI	CCWGG	4 cut(s)	310, 359, 1309, 1326
BstNSI	RCATGY	3 cut(s)	485, 1059, 1280
BstPAI	GACNNNNGTC	1 cut(s)	1083
BstSCI	CCNGG	4 cut(s)	308, 357, 1307, 1324
BstSFI	CTRYAG	1 cut(s)	813
BstV2I	GAAGAC	2 cut(s)	107, 1241
BstZ17I	GTATAC	2 cut(s)	417, 717
BsuRI	GGCC	1 cut(s)	1307
BtsCI	GGATG	4 cut(s)	188, 242, 415, 1342
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	6 cut(s)	477, 483, 652, 820, 1057, 1278
CaiI	CAGNNNCTG	1 cut(s)	697
CfoI	GCGC	3 cut(s)	335, 481, 1055
Cfr13I	GGNCC	1 cut(s)	870
Csp6I	GTAC	2 cut(s)	138, 1117
CviQI	GTAC	2 cut(s)	138, 1117
DdeI	CTNAG	4 cut(s)	150, 434, 969, 1292
DpnI	GATC	2 cut(s)	993, 1161
DpnII	GATC	2 cut(s)	991, 1159
EaeI	YGGCCR	1 cut(s)	1305
Eam1104I	CTCTTC	2 cut(s)	218, 844
EarI	CTCTTC	2 cut(s)	218, 844
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	2 cut(s)	351, 781
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	870
Eco72I	CACGTG	1 cut(s)	1172
EcoO109I	RGGNCCY	1 cut(s)	870
EcoRI	GAATTC	1 cut(s)	1024
EcoRII	CCWGG	4 cut(s)	308, 357, 1307, 1324
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	960
EcoT38I	GRGCYC	2 cut(s)	351, 781
ErhI	CCWWGG	1 cut(s)	873
FaqI	GGGAC	1 cut(s)	279
FblI	GTMKAC	2 cut(s)	416, 716
FokI	GGATG	4 cut(s)	175, 229, 422, 1349
FriOI	GRGCYC	2 cut(s)	351, 781
FspBI	CTAG	2 cut(s)	1154, 1344
GlaI	GCGC	3 cut(s)	334, 480, 1054
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	1347
HaeIII	GGCC	1 cut(s)	1307
HapII	CCGG	1 cut(s)	407
HhaI	GCGC	3 cut(s)	335, 481, 1055
Hin6I	GCGC	3 cut(s)	333, 479, 1053
HinP1I	GCGC	3 cut(s)	333, 479, 1053
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HindIII	AAGCTT	1 cut(s)	1191
HinfI	GANTC	9 cut(s)	86, 130, 228, 292, 538, 635, 1246, 1256, 1315
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	3 cut(s)	87, 298, 1216
Hpy166II	GTNNAC	3 cut(s)	417, 717, 1078
Hpy188I	TCNGA	6 cut(s)	285, 437, 466, 514, 537, 687
Hpy188III	TCNNGA	2 cut(s)	1253, 1319
Hpy8I	GTNNAC	3 cut(s)	417, 717, 1078
HpyAV	CCTTC	4 cut(s)	430, 461, 574, 1076
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	4 cut(s)	140, 516, 913, 1171
HpyCH4V	TGCA	7 cut(s)	691, 724, 861, 958, 1059, 1169, 1263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 339, 703, 1222
HpyF3I	CTNAG	4 cut(s)	150, 434, 969, 1292
HpySE526I	ACGT	4 cut(s)	140, 516, 913, 1171
HspAI	GCGC	3 cut(s)	333, 479, 1053
Kzo9I	GATC	2 cut(s)	991, 1159
LweI	GCATC	2 cut(s)	678, 1219
MaeI	CTAG	2 cut(s)	1154, 1344
MaeII	ACGT	4 cut(s)	140, 516, 913, 1171
MaeIII	GTNAC	1 cut(s)	1204
MalI	GATC	2 cut(s)	993, 1161
MboI	GATC	2 cut(s)	991, 1159
MboII	GAAGA	6 cut(s)	107, 205, 831, 1154, 1241, 1310
MhlI	GDGCHC	3 cut(s)	351, 781, 1143
MlsI	TGGCCA	1 cut(s)	1307
MluCI	AATT	4 cut(s)	771, 931, 1024, 1198
MluNI	TGGCCA	1 cut(s)	1307
MlyI	GAGTC	3 cut(s)	80, 301, 1255
Mox20I	TGGCCA	1 cut(s)	1307
Mph1103I	ATGCAT	1 cut(s)	960
MscI	TGGCCA	1 cut(s)	1307
MseI	TTAA	4 cut(s)	495, 980, 1002, 1354
MslI	CAYNNNNRTG	3 cut(s)	486, 546, 786
Msp20I	TGGCCA	1 cut(s)	1307
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	4 cut(s)	310, 359, 1309, 1326
Mva1269I	GAATGC	1 cut(s)	909
MvaI	CCWGG	4 cut(s)	310, 359, 1309, 1326
MwoI	GCNNNNNNNGC	4 cut(s)	108, 339, 703, 1222
NdeII	GATC	2 cut(s)	991, 1159
NlaIV	GGNNCC	2 cut(s)	871, 1151
NmuCI	GTSAC	1 cut(s)	1204
NsiI	ATGCAT	1 cut(s)	960
NspI	RCATGY	3 cut(s)	485, 1059, 1280
PaeI	GCATGC	3 cut(s)	485, 1059, 1280
PctI	GAATGC	1 cut(s)	909
PfeI	GAWTC	6 cut(s)	130, 228, 538, 635, 1256, 1315
PleI	GAGTC	3 cut(s)	80, 300, 1254
PmaCI	CACGTG	1 cut(s)	1172
PmlI	CACGTG	1 cut(s)	1172
PpsI	GAGTC	3 cut(s)	80, 300, 1254
Ppu21I	YACGTR	1 cut(s)	1172
PpuMI	RGGWCCY	1 cut(s)	870
PshAI	GACNNNNGTC	1 cut(s)	1083
PsiI	TTATAA	1 cut(s)	734
Psp5II	RGGWCCY	1 cut(s)	870
Psp6I	CCWGG	4 cut(s)	308, 357, 1307, 1324
PspCI	CACGTG	1 cut(s)	1172
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	4 cut(s)	308, 357, 1307, 1324
PspN4I	GGNNCC	2 cut(s)	871, 1151
PspPI	GGNCC	1 cut(s)	870
PspPPI	RGGWCCY	1 cut(s)	870
PstNI	CAGNNNCTG	1 cut(s)	697
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	139, 1118
RsaNI	GTAC	2 cut(s)	138, 1117
RseI	CAYNNNNRTG	3 cut(s)	486, 546, 786
SaqAI	TTAA	4 cut(s)	495, 980, 1002, 1354
Sau3AI	GATC	2 cut(s)	991, 1159
Sau96I	GGNCC	1 cut(s)	870
SchI	GAGTC	3 cut(s)	80, 301, 1255
ScrFI	CCNGG	4 cut(s)	310, 359, 1309, 1326
SduI	GDGCHC	3 cut(s)	351, 781, 1143
SfaNI	GCATC	2 cut(s)	678, 1219
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	870
SmiMI	CAYNNNNRTG	3 cut(s)	486, 546, 786
SmlI	CTYRAG	1 cut(s)	1319
SmoI	CTYRAG	1 cut(s)	1319
SphI	GCATGC	3 cut(s)	485, 1059, 1280
Sse9I	AATT	4 cut(s)	771, 931, 1024, 1198
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	2 cut(s)	1154, 1344
StyD4I	CCNGG	4 cut(s)	308, 357, 1307, 1324
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	4 cut(s)	143, 519, 916, 1174
TaqI	TCGA	2 cut(s)	337, 351
TasI	AATT	4 cut(s)	771, 931, 1024, 1198
TfiI	GAWTC	6 cut(s)	130, 228, 538, 635, 1256, 1315
Tru1I	TTAA	4 cut(s)	495, 980, 1002, 1354
Tru9I	TTAA	4 cut(s)	495, 980, 1002, 1354
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	1204
Tsp45I	GTSAC	1 cut(s)	1204
TspDTI	ATGAA	2 cut(s)	530, 1171
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	870
XapI	RAATTY	3 cut(s)	771, 1024, 1198
XceI	RCATGY	3 cut(s)	485, 1059, 1280
XmiI	GTMKAC	2 cut(s)	416, 716
XspI	CTAG	2 cut(s)	1154, 1344
Zsp2I	ATGCAT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.