Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

9419989 .. 9420192

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0057300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGTTGGTCGGAGGTGCTTGCCCTCTAAGCGGTCTATTGTCACCGGAACATGGGGAGGTATTGGTGTGCAAGAAAGCCATGGTTCTTGCAATTTTGGAGACAGATGCGTTGGCAGTCCAAAGGCAATTGAGTGCGGCTACAGGCAGTAATACATCAGTGCTGGAAAGGATATATGGTGATATGACTCTTGTGTTGGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

67

Amino Acids

6.97

Weight (kDa)

4.75

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	30, 134
AfiI	CCNNNNNNNGG	2 cut(s)	29, 50
Alw26I	GTCTC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	33, 188
BcoDI	GTCTC	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmsI	GCATC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 50
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	29, 50
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	29, 50
BsmAI	GTCTC	1 cut(s)	92
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	2 cut(s)	30, 134
BssECI	CCNNGG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	19
CviAII	CATG	2 cut(s)	50, 79
CviJI	RGCY	2 cut(s)	77, 137
CviKI_1	RGCY	2 cut(s)	77, 137
DdeI	CTNAG	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	53, 82
FaiI	YATR	6 cut(s)	51, 80, 172, 174, 182, 202
FatI	CATG	2 cut(s)	49, 78
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	53, 82
HinfI	GANTC	2 cut(s)	184, 197
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	33, 188
Hpy188I	TCNGA	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	69, 89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	53, 82
LpnPI	CCDG	3 cut(s)	57, 126, 146
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	39
MfeI	CAATTG	1 cut(s)	125
MluCI	AATT	2 cut(s)	90, 125
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	3 cut(s)	5, 33, 49
MspI	CCGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	78
NlaIII	CATG	2 cut(s)	53, 82
NmuCI	GTSAC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
SatI	GCNGC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	178
SetI	ASST	2 cut(s)	16, 60
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	138
SgeI	CNNG	9 cut(s)	30, 56, 62, 82, 91, 98, 153, 173, 200
Sse9I	AATT	2 cut(s)	90, 125
SsiI	CCGC	2 cut(s)	30, 134
StyI	CCWWGG	1 cut(s)	78
TasI	AATT	2 cut(s)	90, 125
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	39
TspRI	CASTG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.