Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00950

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Reverse (-)

13191 .. 14379

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTTATCACAAGGAGTTGCTCTGCCGGATGAGTATACCTTCCCCTTTGTTCTCAGAGCTTGTGCTTACTTGTTTGCCTTATCGGAAGGAAAACAAGCGCATGCTCATGTTGTCAAGCTTGGGTTTGGTTCAGACGTTTATATCGGCAATAGTCTGATTCATCTGTATGCTTCCTGTGGGTGTTTGGATTACGCACAGAAGGTGTTTGAGAAAATGTGTGAGAGAAGCCTTGTGTCGTGGAATGTTATGATTGATTCTTTGGTTGGGGCTGGCGAGTTTGAGAGTTCGCTCAAAGTGTTTGGTCAGATGCAGAGGCTGTTTGAGCCTGATGGGTATACAATGCAGAGTGTTATAAATGCTTGTGCTGGTTTGGGGGCTTTGGATTTGGGAATGTGGGCTCATGCTTATGTGTTGAGGAAGTGTGGTAATGCTGTAGCCAGCAATGTTTTGGTGAACTCTTCGTTGGTTGATATGTACTGCAAATGTGGGTCCTTAGATATGGCTCTCCAAGTGTTTGAGGGAATGCCGAAACGTGATGTGATTACATGGAATTATATGATTTTGGGATTTGCCATGCATGGAAAAGCTGAGGCAGCCTTAAACCGAATTCCATCACATTCGTTGGTGTTTTTGAGTGCATGCAATCACAGAGGCATGGTTAACGAAGTTCGTAAGTTCTTTGATGTGATGGTAAAGGAGTACAAGATTGAACCGCGATTAGAGCACTATGGGTGCCTAGTTGATCTTCTTGCACGTGCTGGTTTCATTGACGAAGCTTTGAATTTGGTGACAACAATGCCCATGAAGCCTGATGCCGTAATATGGAGGAGTCTTCTTGATGCTTGCAGTAAGCAACAGCATGCCAGTATTGAGCTAAGTGAAGAAGTGGCCAGGCATATCCTTGAATCTGGAGGAGAGGATGTTTCTAGTGGTGTTTATGTGCTTTTGTCAAGAGTGTATGCTTCAGCTAGCCGCTGGAATGATGTCGGATCAATTCGGAAATTGATGACAGAGGAGGGTATAGCCAAAGAGCCTGGCTGTAGTTTAATAGACATAGATGGTATTACGCATGAATTCTTTGCCGGGGACACATCTCATCCTCATAGTAGAGAAATATATCAGGTCTTGGATGCGATGAAGGAAAGACTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

384

Amino Acids

42.57

Weight (kDa)

5.72

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 122	1.5e-07	PPR repeat family
E_motif	PF20431	287 - 350	4.9e-15	E motif
Eplus_motif	PF20430	356 - 377	1.1e-10	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	732
AccI	GTMKAC	2 cut(s)	35, 335
AccII	CGCG	1 cut(s)	715
AciI	CCGC	2 cut(s)	713, 973
AclWI	GGATC	1 cut(s)	997
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	3 cut(s)	606, 781, 1073
AcuI	CTGAAG	1 cut(s)	948
AcvI	CACGTG	1 cut(s)	755
AfaI	GTAC	2 cut(s)	476, 701
AfiI	CCNNNNNNNGG	1 cut(s)	822
AgsI	TTSAA	3 cut(s)	710, 781, 905
AjnI	CCWGG	2 cut(s)	890, 1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	6 cut(s)	59, 118, 587, 776, 874, 968
AluI	AGCT	6 cut(s)	59, 118, 587, 776, 874, 968
Alw21I	GWGCWC	1 cut(s)	726
AlwI	GGATC	1 cut(s)	997
AlwNI	CAGNNNCTG	1 cut(s)	316
AoxI	GGCC	1 cut(s)	888
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	3 cut(s)	606, 781, 1073
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	1084
AsuHPI	GGTGA	2 cut(s)	463, 799
AsuNHI	GCTAGC	1 cut(s)	968
AvaII	GGWCC	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	890
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	400
BbrPI	CACGTG	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	824
Bbv12I	GWGCWC	1 cut(s)	726
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	4 cut(s)	323, 619, 682, 1052
BceAI	ACGGC	1 cut(s)	800
BciT130I	CCWGG	2 cut(s)	892, 1035
BcnI	CCSGG	1 cut(s)	1084
BfaI	CTAG	3 cut(s)	737, 927, 969
BfmI	CTRYAG	2 cut(s)	432, 1039
BisI	GCNGC	2 cut(s)	594, 973
BlsI	GCNGC	2 cut(s)	595, 974
Bme1390I	CCNGG	3 cut(s)	892, 1035, 1084
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	2 cut(s)	490, 734
BmrFI	CCNGG	3 cut(s)	892, 1035, 1084
BmsI	GCATC	4 cut(s)	297, 802, 829, 1120
BmtI	GCTAGC	1 cut(s)	972
BpiI	GAAGAC	1 cut(s)	824
BpmI	CTGGAG	1 cut(s)	930
Bpu10I	CCTNAGC	1 cut(s)	588
BpuMI	CCSGG	1 cut(s)	1084
BsaAI	YACGTR	1 cut(s)	755
BsaJI	CCNNGG	1 cut(s)	1083
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	1 cut(s)	822
Bse1I	ACTGG	1 cut(s)	864
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	892, 1035
BseDI	CCNNGG	1 cut(s)	1083
BseGI	GGATG	4 cut(s)	34, 925, 1096, 1135
BseLI	CCNNNNNNNGG	1 cut(s)	822
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	67, 579
BseNI	ACTGG	1 cut(s)	864
BseRI	GAGGAG	3 cut(s)	841, 927, 1028
BseXI	GCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	715
BshFI	GGCC	1 cut(s)	890
BshNI	GGYRCC	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	726
BsiSI	CCGG	2 cut(s)	26, 1083
BslFI	GGGAC	1 cut(s)	1100
BslI	CCNNNNNNNGG	1 cut(s)	822
BsmFI	GGGAC	1 cut(s)	1100
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	890
Bsp1286I	GDGCHC	2 cut(s)	400, 726
Bsp143I	GATC	2 cut(s)	742, 989
BspACI	CCGC	2 cut(s)	713, 973
BspANI	GGCC	1 cut(s)	890
BspCNI	CTCAG	2 cut(s)	66, 580
BspFNI	CGCG	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	490, 734
BspOI	GCTAGC	1 cut(s)	972
BspPI	GGATC	1 cut(s)	997
BspT107I	GGYRCC	1 cut(s)	732
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	864
BssECI	CCNNGG	1 cut(s)	1083
BssMI	GATC	2 cut(s)	742, 989
BssNAI	GTATAC	2 cut(s)	36, 336
Bst1107I	GTATAC	2 cut(s)	36, 336
Bst2UI	CCWGG	2 cut(s)	892, 1035
Bst6I	CTCTTC	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	755
BstC8I	GCNNGC	7 cut(s)	102, 271, 439, 640, 844, 861, 970
BstDEI	CTNAG	4 cut(s)	53, 493, 588, 875
BstF5I	GGATG	4 cut(s)	34, 925, 1096, 1135
BstFNI	CGCG	1 cut(s)	715
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	745, 992
BstMBI	GATC	2 cut(s)	742, 989
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 593, 721, 805
BstNI	CCWGG	2 cut(s)	892, 1035
BstNSI	RCATGY	3 cut(s)	104, 642, 863
BstSCI	CCNGG	3 cut(s)	890, 1033, 1082
BstSFI	CTRYAG	2 cut(s)	432, 1039
BstUI	CGCG	1 cut(s)	715
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	1 cut(s)	824
BstZ17I	GTATAC	2 cut(s)	36, 336
BsuRI	GGCC	1 cut(s)	890
BtgZI	GCGATG	1 cut(s)	1148
BtsCI	GGATG	4 cut(s)	34, 925, 1096, 1135
Cac8I	GCNNGC	7 cut(s)	102, 271, 439, 640, 844, 861, 970
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	475, 700
CviQI	GTAC	2 cut(s)	475, 700
DdeI	CTNAG	4 cut(s)	53, 493, 588, 875
DpnI	GATC	2 cut(s)	744, 991
DpnII	GATC	2 cut(s)	742, 989
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	948
Eco72I	CACGTG	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRI	GAATTC	2 cut(s)	606, 1073
EcoRII	CCWGG	2 cut(s)	890, 1033
EcoT22I	ATGCAT	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	400
FaqI	GGGAC	1 cut(s)	1100
FblI	GTMKAC	2 cut(s)	35, 335
Fnu4HI	GCNGC	2 cut(s)	594, 973
FokI	GGATG	4 cut(s)	41, 932, 1083, 1142
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	594, 973
FspBI	CTAG	3 cut(s)	737, 927, 969
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	594, 973
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	1 cut(s)	890
HapII	CCGG	2 cut(s)	26, 1083
HhaI	GCGC	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	2 cut(s)	116, 774
HinfI	GANTC	5 cut(s)	157, 254, 829, 905, 1146
HpaI	GTTAAC	1 cut(s)	661
HpaII	CCGG	2 cut(s)	26, 1083
HphI	GGTGA	2 cut(s)	463, 799
Hpy166II	GTNNAC	4 cut(s)	36, 336, 454, 661
Hpy188I	TCNGA	7 cut(s)	56, 85, 133, 156, 306, 989, 999
Hpy188III	TCNNGA	3 cut(s)	836, 909, 951
Hpy8I	GTNNAC	4 cut(s)	36, 336, 454, 661
HpyAV	CCTTC	4 cut(s)	49, 80, 193, 1132
HpyCH4IV	ACGT	3 cut(s)	135, 532, 754
HpyCH4V	TGCA	8 cut(s)	310, 343, 480, 577, 638, 642, 752, 846
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 593, 721, 805
HpyF3I	CTNAG	4 cut(s)	53, 493, 588, 875
HpySE526I	ACGT	3 cut(s)	135, 532, 754
HspAI	GCGC	1 cut(s)	98
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	2 cut(s)	742, 989
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	4 cut(s)	297, 802, 829, 1120
MaeI	CTAG	3 cut(s)	737, 927, 969
MaeII	ACGT	3 cut(s)	135, 532, 754
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	2 cut(s)	744, 991
MboI	GATC	2 cut(s)	742, 989
MboII	GAAGA	4 cut(s)	450, 737, 824, 893
MhlI	GDGCHC	2 cut(s)	400, 726
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	6 cut(s)	550, 606, 781, 993, 1001, 1073
MluNI	TGGCCA	1 cut(s)	890
MlyI	GAGTC	2 cut(s)	838, 1140
MmeI	TCCRAC	1 cut(s)	967
Mox20I	TGGCCA	1 cut(s)	890
Mph1103I	ATGCAT	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	3 cut(s)	599, 660, 1046
MslI	CAYNNNNRTG	3 cut(s)	105, 165, 405
Msp20I	TGGCCA	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	975
MspI	CCGG	2 cut(s)	26, 1083
MspR9I	CCNGG	3 cut(s)	892, 1035, 1084
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	892, 1035
MvnI	CGCG	1 cut(s)	715
MwoI	GCNNNNNNNGC	4 cut(s)	322, 593, 721, 805
NciI	CCSGG	1 cut(s)	1084
NdeII	GATC	2 cut(s)	742, 989
NheI	GCTAGC	1 cut(s)	968
NlaIV	GGNNCC	2 cut(s)	490, 734
NmuCI	GTSAC	1 cut(s)	787
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	3 cut(s)	104, 642, 863
PaeI	GCATGC	3 cut(s)	104, 642, 863
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	157, 254, 905
PkrI	GCNGC	2 cut(s)	595, 974
PleI	GAGTC	2 cut(s)	837, 1140
PmaCI	CACGTG	1 cut(s)	755
PmlI	CACGTG	1 cut(s)	755
PpsI	GAGTC	2 cut(s)	837, 1140
Ppu21I	YACGTR	1 cut(s)	755
PpuMI	RGGWCCY	1 cut(s)	489
PsiI	TTATAA	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	890, 1033
PspCI	CACGTG	1 cut(s)	755
PspGI	CCWGG	2 cut(s)	890, 1033
PspN4I	GGNNCC	2 cut(s)	490, 734
PspPI	GGNCC	1 cut(s)	489
PspPPI	RGGWCCY	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	316
RsaI	GTAC	2 cut(s)	476, 701
RsaNI	GTAC	2 cut(s)	475, 700
RseI	CAYNNNNRTG	3 cut(s)	105, 165, 405
SaqAI	TTAA	3 cut(s)	599, 660, 1046
SatI	GCNGC	2 cut(s)	594, 973
Sau3AI	GATC	2 cut(s)	742, 989
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	2 cut(s)	838, 1140
ScrFI	CCNGG	3 cut(s)	892, 1035, 1084
SduI	GDGCHC	2 cut(s)	400, 726
SfaNI	GCATC	4 cut(s)	297, 802, 829, 1120
SfcI	CTRYAG	2 cut(s)	432, 1039
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	3 cut(s)	105, 165, 405
SphI	GCATGC	3 cut(s)	104, 642, 863
Sse9I	AATT	6 cut(s)	550, 606, 781, 993, 1001, 1073
SsiI	CCGC	2 cut(s)	713, 973
SspMI	CTAG	3 cut(s)	737, 927, 969
StyD4I	CCNGG	3 cut(s)	890, 1033, 1082
TaiI	ACGT	3 cut(s)	138, 535, 757
TasI	AATT	6 cut(s)	550, 606, 781, 993, 1001, 1073
TatI	WGTACW	2 cut(s)	474, 699
TauI	GCSGC	1 cut(s)	975
TfiI	GAWTC	3 cut(s)	157, 254, 905
Tru1I	TTAA	3 cut(s)	599, 660, 1046
Tru9I	TTAA	3 cut(s)	599, 660, 1046
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	5 cut(s)	149, 754, 818, 1086, 1151
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	3 cut(s)	606, 781, 1073
XceI	RCATGY	3 cut(s)	104, 642, 863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmiI	GTMKAC	2 cut(s)	35, 335
XspI	CTAG	3 cut(s)	737, 927, 969
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.