Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

9390653 .. 9390880

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGACCAGGGCGTATCGTATCTCTCCAACGTTGACCTGTACACCTCCAAAGCCGCCAGCTGGCGCGACACGCTTCAGGTAAGGCTCGGCCCTGTTCCGGCGGCCGTTGACGAAGTTCCAGAGATTTGTAGAGATGAAATTGTGGCGTGGAACAAGGAGATCCAACGGCTAGCAGAGGAGCTGCTGGGGCTGGCAAGTGAGGGCTGGGATTGCACGCGGAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

4.5

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	66, 217
AciI	CCGC	3 cut(s)	54, 101, 217
AclI	AACGTT	1 cut(s)	30
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	60, 97
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	3 cut(s)	60, 181, 225
AluI	AGCT	3 cut(s)	60, 181, 225
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	2 cut(s)	88, 102
ApeKI	GCWGC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	4, 89
AsuNHI	GCTAGC	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	2 cut(s)	89, 182
BciT130I	CCWGG	1 cut(s)	8
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	3 cut(s)	54, 102, 182
BlsI	GCNGC	3 cut(s)	55, 103, 183
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 89
BmrFI	CCNGG	1 cut(s)	8
BmtI	GCTAGC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 97
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	7
BseLI	CCNNNNNNNGG	2 cut(s)	60, 97
BseRI	GAGGAG	1 cut(s)	191
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	168
BseYI	CCCAGC	2 cut(s)	184, 204
Bsh1236I	CGCG	2 cut(s)	66, 217
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	90, 104
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	60, 97
BsnI	GGCC	2 cut(s)	90, 104
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	3 cut(s)	54, 101, 217
BspANI	GGCC	2 cut(s)	90, 104
BspFNI	CGCG	2 cut(s)	66, 217
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	5 cut(s)	58, 62, 171, 192, 215
BstFNI	CGCG	2 cut(s)	66, 217
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 187, 210
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstUI	CGCG	2 cut(s)	66, 217
BstV1I	GCAGC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BstZI	CGGCCG	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	90, 104
Cac8I	GCNNGC	5 cut(s)	58, 62, 171, 192, 215
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	4, 89
Csp6I	GTAC	1 cut(s)	40
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	102
EagI	CGGCCG	1 cut(s)	102
EclXI	CGGCCG	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	54, 102, 182
Fsp4HI	GCNGC	3 cut(s)	54, 102, 182
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	3 cut(s)	54, 102, 182
GsaI	CCCAGC	2 cut(s)	188, 208
HaeIII	GGCC	2 cut(s)	90, 104
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	2 cut(s)	34, 109
HindII	GTYRAC	2 cut(s)	34, 109
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	3 cut(s)	34, 42, 109
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	3 cut(s)	34, 42, 109
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 187, 210
HpySE526I	ACGT	1 cut(s)	30
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	30
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MflI	RGATCY	1 cut(s)	159
MluCI	AATT	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	51, 187
MnlI	CCTC	3 cut(s)	55, 169, 193
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	2 cut(s)	66, 217
MwoI	GCNNNNNNNGC	3 cut(s)	70, 187, 210
NdeII	GATC	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	169
NmeAIII	GCCGAG	1 cut(s)	66
PkrI	GCNGC	3 cut(s)	55, 103, 183
Psp1406I	AACGTT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	6
PspFI	CCCAGC	2 cut(s)	184, 204
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 89
PsuI	RGATCY	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	60
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SatI	GCNGC	3 cut(s)	54, 102, 182
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	2 cut(s)	4, 89
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	7 cut(s)	33, 39, 47, 62, 81, 183, 227
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	3 cut(s)	54, 101, 217
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	33
TasI	AATT	1 cut(s)	138
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	2 cut(s)	56, 104
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.